RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 MEGF6O75095 1541 aa31.24■■■□□ 2.59
PTPN4-211ENST00000488279 ZBTB7AO95365 584 aa31.23■■■□□ 2.59
PTPN4-211ENST00000488279 HSPA5P11021 654 aaKnown RBP31.23■■■□□ 2.59
PTPN4-211ENST00000488279 EMILIN1Q9Y6C2 1016 aa31.23■■■□□ 2.59
PTPN4-211ENST00000488279 MYOM1P52179 1685 aa31.22■■■□□ 2.59
PTPN4-211ENST00000488279 KIF20BQ96Q89 1820 aa31.22■■■□□ 2.59
PTPN4-211ENST00000488279 PPM1GO15355 546 aaPredicted RBP31.22■■■□□ 2.59
PTPN4-211ENST00000488279 TATP17735 454 aaPredicted RBP31.22■■■□□ 2.59
PTPN4-211ENST00000488279 KAT6BQ8WYB5 2073 aa31.21■■■□□ 2.59
PTPN4-211ENST00000488279 SLC27A3Q5K4L6 730 aa31.19■■■□□ 2.58
PTPN4-211ENST00000488279 LRRC4BQ9NT99 713 aa31.19■■■□□ 2.58
PTPN4-211ENST00000488279 RGPD2P0DJD1 1756 aa31.19■■■□□ 2.58
PTPN4-211ENST00000488279 ATF5Q9Y2D1 282 aaPredicted RBP31.18■■■□□ 2.58
PTPN4-211ENST00000488279 BTAF1O14981 1849 aa31.18■■■□□ 2.58
PTPN4-211ENST00000488279 CASZ1Q86V15 1759 aa31.15■■■□□ 2.58
PTPN4-211ENST00000488279 WASHC2AQ641Q2 1341 aa31.15■■■□□ 2.58
PTPN4-211ENST00000488279 MTFR1LQ9H019 292 aa31.14■■■□□ 2.58
PTPN4-211ENST00000488279 PTGER2P43116 358 aa31.13■■■□□ 2.57
PTPN4-211ENST00000488279 PANK3Q9H999 370 aa31.13■■■□□ 2.57
PTPN4-211ENST00000488279 ZNF827Q17R98 1081 aa31.12■■■□□ 2.57
PTPN4-211ENST00000488279 POLKQ9UBT6 870 aa31.12■■■□□ 2.57
PTPN4-211ENST00000488279 PCDH11XQ9BZA7 1347 aa31.12■■■□□ 2.57
PTPN4-211ENST00000488279 PCDH11YQ9BZA8 1340 aa31.12■■■□□ 2.57
PTPN4-211ENST00000488279 NSD2O96028 1365 aa31.09■■■□□ 2.57
PTPN4-211ENST00000488279 DCAF8L1A6NGE4 600 aa31.09■■■□□ 2.57
PTPN4-211ENST00000488279 TNNT2P45379 298 aaPredicted RBP31.09■■■□□ 2.57
PTPN4-211ENST00000488279 AKT1S1Q96B36 256 aa31.09■■■□□ 2.57
PTPN4-211ENST00000488279 KCNQ4P56696 695 aa31.07■■■□□ 2.56
PTPN4-211ENST00000488279 SHANK3Q9BYB0 1731 aa31.07■■■□□ 2.56
PTPN4-211ENST00000488279 PAPPAQ13219 1627 aa31.06■■■□□ 2.56
PTPN4-211ENST00000488279 EYA1Q99502 592 aa31.06■■■□□ 2.56
PTPN4-211ENST00000488279 CYP27B1O15528 508 aa31.05■■■□□ 2.56
PTPN4-211ENST00000488279 CCNL1Q9UK58 526 aaPredicted RBP31.05■■■□□ 2.56
PTPN4-211ENST00000488279 DOT1LQ8TEK3 1739 aa31.04■■■□□ 2.56
PTPN4-211ENST00000488279 TFCP2L1Q9NZI6 479 aa31.04■■■□□ 2.56
PTPN4-211ENST00000488279 SPG7Q9UQ90 795 aa31.04■■■□□ 2.56
PTPN4-211ENST00000488279 SGIP1Q9BQI5 828 aa31.02■■■□□ 2.56
PTPN4-211ENST00000488279 NCAPD2Q15021 1401 aa31.01■■■□□ 2.55
PTPN4-211ENST00000488279 MPRIPQ6WCQ1 1025 aa31.01■■■□□ 2.55
PTPN4-211ENST00000488279 SLC16A10Q8TF71 515 aa31.01■■■□□ 2.55
PTPN4-211ENST00000488279 EIF4A2Q14240 407 aaKnown RBP30.99■■■□□ 2.55
PTPN4-211ENST00000488279 FHDC1Q9C0D6 1143 aaPredicted RBP30.99■■■□□ 2.55
PTPN4-211ENST00000488279 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.99■■■□□ 2.556e-7■■■□□ 15.6
PTPN4-211ENST00000488279 MAP2P11137 1827 aaKnown RBP30.98■■■□□ 2.55
PTPN4-211ENST00000488279 HMGB2P26583 209 aaKnown RBP30.98■■■□□ 2.55
PTPN4-211ENST00000488279 NKX1-1Q15270 411 aaPredicted RBP30.98■■■□□ 2.55
PTPN4-211ENST00000488279 ARXQ96QS3 562 aa30.98■■■□□ 2.55
PTPN4-211ENST00000488279 ANKRD26Q9UPS8 1709 aa30.98■■■□□ 2.55
PTPN4-211ENST00000488279 SYT17Q9BSW7 474 aa30.97■■■□□ 2.55
PTPN4-211ENST00000488279 PNPLA7Q6ZV29 1317 aa30.97■■■□□ 2.55
PTPN4-211ENST00000488279 MORC1Q86VD1 984 aa30.96■■■□□ 2.55
PTPN4-211ENST00000488279 KNSTRNQ9Y448 316 aa30.96■■■□□ 2.55
PTPN4-211ENST00000488279 LY75O60449 1722 aa30.93■■■□□ 2.54
PTPN4-211ENST00000488279 SMARCC1Q92922 1105 aaPredicted RBP30.93■■■□□ 2.54
PTPN4-211ENST00000488279 IFNL2Q8IZJ0 200 aa30.92■■■□□ 2.54
PTPN4-211ENST00000488279 PALLDQ8WX93 1383 aa30.92■■■□□ 2.54
PTPN4-211ENST00000488279 POLD1P28340 1107 aa30.91■■■□□ 2.54
PTPN4-211ENST00000488279 PIGBQ92521 554 aa30.91■■■□□ 2.54
PTPN4-211ENST00000488279 YY1P25490 414 aa30.9■■■□□ 2.54
PTPN4-211ENST00000488279 PKD1L3Q7Z443 1732 aa30.88■■■□□ 2.53
PTPN4-211ENST00000488279 MSH5O43196 834 aa30.88■■■□□ 2.53
PTPN4-211ENST00000488279 PHKG2P15735 406 aa30.88■■■□□ 2.53
PTPN4-211ENST00000488279 IGSF1Q8N6C5 1336 aa30.88■■■□□ 2.53
PTPN4-211ENST00000488279 KIF7Q2M1P5 1343 aa30.87■■■□□ 2.53
PTPN4-211ENST00000488279 TMOD3Q9NYL9 352 aa30.86■■■□□ 2.53
PTPN4-211ENST00000488279 PLEKHG2Q9H7P9 1386 aa30.85■■■□□ 2.53
PTPN4-211ENST00000488279 COL23A1Q86Y22 540 aaPredicted RBP30.85■■■□□ 2.53
PTPN4-211ENST00000488279 QSER1Q2KHR3 1735 aa30.84■■■□□ 2.53
PTPN4-211ENST00000488279 MAP3K5Q99683 1374 aa30.83■■■□□ 2.53
PTPN4-211ENST00000488279 FLAD1Q8NFF5 587 aa30.83■■■□□ 2.53
PTPN4-211ENST00000488279 PLEKHO1Q53GL0 409 aaPredicted RBP30.82■■■□□ 2.52
PTPN4-211ENST00000488279 AMER1Q5JTC6 1135 aaPredicted RBP30.82■■■□□ 2.52
PTPN4-211ENST00000488279 UTRNP46939 3433 aa30.82■■■□□ 2.52
PTPN4-211ENST00000488279 KLHL34Q8N239 644 aa30.8■■■□□ 2.52
PTPN4-211ENST00000488279 TOGARAM1Q9Y4F4 1720 aa30.8■■■□□ 2.52
PTPN4-211ENST00000488279 LOC102724428A0A0B4J2F2 783 aa30.79■■■□□ 2.52
PTPN4-211ENST00000488279 HSP90AB1P08238 724 aaKnown RBP30.79■■■□□ 2.52
PTPN4-211ENST00000488279 SIK1P57059 783 aa30.79■■■□□ 2.52
PTPN4-211ENST00000488279 AMOTQ4VCS5 1084 aa30.79■■■□□ 2.52
PTPN4-211ENST00000488279 ASAP1Q9ULH1 1129 aa30.79■■■□□ 2.52
PTPN4-211ENST00000488279 AK7Q96M32 723 aa30.78■■■□□ 2.52
PTPN4-211ENST00000488279 ITGB4P16144 1822 aa30.77■■■□□ 2.52
PTPN4-211ENST00000488279 ERVV-2B6SEH9 535 aa30.76■■■□□ 2.51
PTPN4-211ENST00000488279 DCAF5Q96JK2 942 aa30.76■■■□□ 2.51
PTPN4-211ENST00000488279 TUBGCP6Q96RT7 1819 aa30.75■■■□□ 2.51
PTPN4-211ENST00000488279 AEBP1Q8IUX7 1158 aa30.75■■■□□ 2.51
PTPN4-211ENST00000488279 PER1O15534 1290 aaPredicted RBP30.74■■■□□ 2.51
PTPN4-211ENST00000488279 IL13P35225 146 aa30.74■■■□□ 2.51
PTPN4-211ENST00000488279 SULT6B1Q6IMI4 303 aa30.74■■■□□ 2.51
PTPN4-211ENST00000488279 ZNF530Q6P9A1 599 aaPredicted RBP30.74■■■□□ 2.51
PTPN4-211ENST00000488279 ATG3Q9NT62 314 aa30.74■■■□□ 2.51
PTPN4-211ENST00000488279 C5P01031 1676 aa30.74■■■□□ 2.51
PTPN4-211ENST00000488279 MSL1Q68DK7 614 aa30.73■■■□□ 2.51
PTPN4-211ENST00000488279 ATP6V1AP38606 617 aa30.72■■■□□ 2.51
PTPN4-211ENST00000488279 MTHFSP49914 203 aa30.71■■■□□ 2.51
PTPN4-211ENST00000488279 GPR162Q16538 588 aa30.71■■■□□ 2.51
PTPN4-211ENST00000488279 LINC00116Q8NCU8 138 aa30.71■■■□□ 2.51
PTPN4-211ENST00000488279 C1orf141Q5JVX7 400 aa30.7■■■□□ 2.51
PTPN4-211ENST00000488279 COL24A1Q17RW2 1714 aa30.7■■■□□ 2.5
PTPN4-211ENST00000488279 PHF14O94880 888 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms