RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 RGPD2P0DJD1 1756 aa17.02■□□□□ 0.32
SDC3-204ENST00000487984 CGNL1Q0VF96 1302 aa17.02■□□□□ 0.32
SDC3-204ENST00000487984 BTAF1O14981 1849 aa17.01■□□□□ 0.31
SDC3-204ENST00000487984 RAPGEF4Q8WZA2 1011 aa17.01■□□□□ 0.31
SDC3-204ENST00000487984 CASZ1Q86V15 1759 aa17.01■□□□□ 0.31
SDC3-204ENST00000487984 ZBTB7AO95365 584 aa17■□□□□ 0.31
SDC3-204ENST00000487984 PRIM1P49642 420 aaKnown RBP17■□□□□ 0.31
SDC3-204ENST00000487984 SYTL4Q96C24 671 aaPredicted RBP17■□□□□ 0.31
SDC3-204ENST00000487984 LRRC4BQ9NT99 713 aa17■□□□□ 0.31
SDC3-204ENST00000487984 PPP1R1BQ9UD71 204 aaPredicted RBP17■□□□□ 0.31
SDC3-204ENST00000487984 PPM1GO15355 546 aaPredicted RBP16.99■□□□□ 0.31
SDC3-204ENST00000487984 TATP17735 454 aaPredicted RBP16.99■□□□□ 0.31
SDC3-204ENST00000487984 NSD2O96028 1365 aa16.99■□□□□ 0.31
SDC3-204ENST00000487984 PAPPAQ13219 1627 aa16.99■□□□□ 0.31
SDC3-204ENST00000487984 SHANK3Q9BYB0 1731 aa16.99■□□□□ 0.31
SDC3-204ENST00000487984 ZNF827Q17R98 1081 aa16.97■□□□□ 0.31
SDC3-204ENST00000487984 WASHC2AQ641Q2 1341 aa16.96■□□□□ 0.31
SDC3-204ENST00000487984 PTGER2P43116 358 aa16.96■□□□□ 0.31
SDC3-204ENST00000487984 SLC27A3Q5K4L6 730 aa16.96■□□□□ 0.31
SDC3-204ENST00000487984 PANK3Q9H999 370 aa16.96■□□□□ 0.31
SDC3-204ENST00000487984 POLKQ9UBT6 870 aa16.96■□□□□ 0.31
SDC3-204ENST00000487984 DOT1LQ8TEK3 1739 aa16.96■□□□□ 0.3
SDC3-204ENST00000487984 PCDH11XQ9BZA7 1347 aa16.96■□□□□ 0.3
SDC3-204ENST00000487984 PCDH11YQ9BZA8 1340 aa16.96■□□□□ 0.3
SDC3-204ENST00000487984 ATF5Q9Y2D1 282 aaPredicted RBP16.95■□□□□ 0.3
SDC3-204ENST00000487984 KAT6BQ8WYB5 2073 aa16.95■□□□□ 0.3
SDC3-204ENST00000487984 NCAPD2Q15021 1401 aa16.95■□□□□ 0.3
SDC3-204ENST00000487984 ANKRD26Q9UPS8 1709 aa16.94■□□□□ 0.3
SDC3-204ENST00000487984 TNNT2P45379 298 aaPredicted RBP16.94■□□□□ 0.3
SDC3-204ENST00000487984 AKT1S1Q96B36 256 aa16.94■□□□□ 0.3
SDC3-204ENST00000487984 CYP27B1O15528 508 aa16.93■□□□□ 0.3
SDC3-204ENST00000487984 KCNQ4P56696 695 aa16.93■□□□□ 0.3
SDC3-204ENST00000487984 MTFR1LQ9H019 292 aa16.93■□□□□ 0.3
SDC3-204ENST00000487984 EYA1Q99502 592 aa16.92■□□□□ 0.3
SDC3-204ENST00000487984 SGIP1Q9BQI5 828 aa16.91■□□□□ 0.3
SDC3-204ENST00000487984 CCNL1Q9UK58 526 aaPredicted RBP16.9■□□□□ 0.3
SDC3-204ENST00000487984 EIF4A2Q14240 407 aaKnown RBP16.89■□□□□ 0.29
SDC3-204ENST00000487984 TFCP2L1Q9NZI6 479 aa16.88■□□□□ 0.29
SDC3-204ENST00000487984 SPG7Q9UQ90 795 aa16.88■□□□□ 0.29
SDC3-204ENST00000487984 MAP2P11137 1827 aaKnown RBP16.88■□□□□ 0.29
SDC3-204ENST00000487984 PNPLA7Q6ZV29 1317 aa16.88■□□□□ 0.29
SDC3-204ENST00000487984 LY75O60449 1722 aa16.87■□□□□ 0.29
SDC3-204ENST00000487984 PKD1L3Q7Z443 1732 aa16.87■□□□□ 0.29
SDC3-204ENST00000487984 MPRIPQ6WCQ1 1025 aa16.87■□□□□ 0.29
SDC3-204ENST00000487984 NKX1-1Q15270 411 aaPredicted RBP16.86■□□□□ 0.29
SDC3-204ENST00000487984 FHDC1Q9C0D6 1143 aaPredicted RBP16.86■□□□□ 0.29
SDC3-204ENST00000487984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.86■□□□□ 0.29
SDC3-204ENST00000487984 PALLDQ8WX93 1383 aa16.86■□□□□ 0.29
SDC3-204ENST00000487984 MORC1Q86VD1 984 aa16.85■□□□□ 0.29
SDC3-204ENST00000487984 KNSTRNQ9Y448 316 aa16.85■□□□□ 0.29
SDC3-204ENST00000487984 KIF7Q2M1P5 1343 aa16.85■□□□□ 0.29
SDC3-204ENST00000487984 TOGARAM1Q9Y4F4 1720 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 SLC16A10Q8TF71 515 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 PIGBQ92521 554 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 ARXQ96QS3 562 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 SYT17Q9BSW7 474 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 IGSF1Q8N6C5 1336 aa16.84■□□□□ 0.29
SDC3-204ENST00000487984 QSER1Q2KHR3 1735 aa16.82■□□□□ 0.28
SDC3-204ENST00000487984 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
SDC3-204ENST00000487984 PHKG2P15735 406 aa16.82■□□□□ 0.28
SDC3-204ENST00000487984 PLEKHG2Q9H7P9 1386 aa16.81■□□□□ 0.28
SDC3-204ENST00000487984 AMER1Q5JTC6 1135 aaPredicted RBP16.81■□□□□ 0.28
SDC3-204ENST00000487984 IFNL2Q8IZJ0 200 aa16.81■□□□□ 0.28
SDC3-204ENST00000487984 SMARCC1Q92922 1105 aaPredicted RBP16.81■□□□□ 0.28
SDC3-204ENST00000487984 TUBGCP6Q96RT7 1819 aa16.81■□□□□ 0.28
SDC3-204ENST00000487984 MAP3K5Q99683 1374 aa16.79■□□□□ 0.28
SDC3-204ENST00000487984 YY1P25490 414 aa16.79■□□□□ 0.28
SDC3-204ENST00000487984 POLD1P28340 1107 aa16.79■□□□□ 0.28
SDC3-204ENST00000487984 COL23A1Q86Y22 540 aaPredicted RBP16.79■□□□□ 0.28
SDC3-204ENST00000487984 TMOD3Q9NYL9 352 aa16.79■□□□□ 0.28
SDC3-204ENST00000487984 MSH5O43196 834 aa16.78■□□□□ 0.28
SDC3-204ENST00000487984 C5P01031 1676 aa16.78■□□□□ 0.28
SDC3-204ENST00000487984 ITGB4P16144 1822 aa16.77■□□□□ 0.28
SDC3-204ENST00000487984 HMGB2P26583 209 aaKnown RBP16.77■□□□□ 0.28
SDC3-204ENST00000487984 AEBP1Q8IUX7 1158 aa16.77■□□□□ 0.28
SDC3-204ENST00000487984 ASAP1Q9ULH1 1129 aa16.77■□□□□ 0.28
SDC3-204ENST00000487984 UTRNP46939 3433 aa16.77■□□□□ 0.27
SDC3-204ENST00000487984 LOC102724428A0A0B4J2F2 783 aa16.76■□□□□ 0.27
SDC3-204ENST00000487984 PER1O15534 1290 aaPredicted RBP16.76■□□□□ 0.27
SDC3-204ENST00000487984 SIK1P57059 783 aa16.76■□□□□ 0.27
SDC3-204ENST00000487984 PLEKHO1Q53GL0 409 aaPredicted RBP16.76■□□□□ 0.27
SDC3-204ENST00000487984 COL24A1Q17RW2 1714 aa16.76■□□□□ 0.27
SDC3-204ENST00000487984 IL13P35225 146 aa16.75■□□□□ 0.27
SDC3-204ENST00000487984 MSL1Q68DK7 614 aa16.75■□□□□ 0.27
SDC3-204ENST00000487984 ZNF530Q6P9A1 599 aaPredicted RBP16.75■□□□□ 0.27
SDC3-204ENST00000487984 KLHL34Q8N239 644 aa16.75■□□□□ 0.27
SDC3-204ENST00000487984 AK7Q96M32 723 aa16.75■□□□□ 0.27
SDC3-204ENST00000487984 HSP90AB1P08238 724 aaKnown RBP16.74■□□□□ 0.27
SDC3-204ENST00000487984 AMOTQ4VCS5 1084 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 SULT6B1Q6IMI4 303 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 AMIGO3Q86WK7 504 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 LINC00116Q8NCU8 138 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 FLAD1Q8NFF5 587 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 DCAF5Q96JK2 942 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 ATG3Q9NT62 314 aa16.74■□□□□ 0.27
SDC3-204ENST00000487984 C4BP0C0L5 1744 aa16.73■□□□□ 0.27
SDC3-204ENST00000487984 KDM6AO15550 1401 aaPredicted RBP16.73■□□□□ 0.27
SDC3-204ENST00000487984 ERVV-2B6SEH9 535 aa16.73■□□□□ 0.27
SDC3-204ENST00000487984 KDRP35968 1356 aa16.73■□□□□ 0.27
SDC3-204ENST00000487984 TAF1LQ8IZX4 1826 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms