RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ZIC2O95409 532 aaPredicted RBP10.37□□□□□ -0.75
USP48-209ENST00000487880 MYCP01106 439 aaPredicted RBP10.37□□□□□ -0.75
USP48-209ENST00000487880 OSBPL3Q9H4L5 887 aa10.37□□□□□ -0.75
USP48-209ENST00000487880 ZFAND3Q9H8U3 227 aa10.37□□□□□ -0.75
USP48-209ENST00000487880 VRTNQ9H8Y1 702 aa10.37□□□□□ -0.75
USP48-209ENST00000487880 FAM187AA6NFU0 413 aa10.36□□□□□ -0.75
USP48-209ENST00000487880 ADD1P35611 737 aaKnown RBP10.36□□□□□ -0.75
USP48-209ENST00000487880 Q6ZVU0 165 aa10.36□□□□□ -0.75
USP48-209ENST00000487880 TRIM50Q86XT4 487 aa10.36□□□□□ -0.75
USP48-209ENST00000487880 PCDHGA11Q9Y5H2 935 aa10.36□□□□□ -0.75
USP48-209ENST00000487880 FAM196BA6NMK8 535 aa10.35□□□□□ -0.75
USP48-209ENST00000487880 DGAT1O75907 488 aa10.35□□□□□ -0.75
USP48-209ENST00000487880 CLDN10P78369 228 aa10.35□□□□□ -0.75
USP48-209ENST00000487880 ATG7O95352 703 aa10.34□□□□□ -0.75
USP48-209ENST00000487880 GTF2IP78347 998 aa10.34□□□□□ -0.75
USP48-209ENST00000487880 CBLBQ13191 982 aa10.33□□□□□ -0.76
USP48-209ENST00000487880 PTK7Q13308 1070 aa10.33□□□□□ -0.76
USP48-209ENST00000487880 CRTC2Q53ET0 693 aaPredicted RBP10.33□□□□□ -0.76
USP48-209ENST00000487880 OGFOD1Q8N543 542 aa10.33□□□□□ -0.76
USP48-209ENST00000487880 KDF1Q8NAX2 398 aaPredicted RBP10.33□□□□□ -0.76
USP48-209ENST00000487880 ZBTB7BO15156 539 aaPredicted RBP10.32□□□□□ -0.76
USP48-209ENST00000487880 DKK1O94907 266 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 ADH1AP07327 375 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 RASA1P20936 1047 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 ATP1A2P50993 1020 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 ELOAQ14241 798 aaKnown RBP10.32□□□□□ -0.76
USP48-209ENST00000487880 CDCA8Q53HL2 280 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 CYP2U1Q7Z449 544 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 LARGE2Q8N3Y3 721 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 MEIOBQ8N635 442 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 KIAA1024Q9UPX6 916 aa10.32□□□□□ -0.76
USP48-209ENST00000487880 USP17L15C9J2P7 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L10C9JJH3 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L13C9JLJ4 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L12C9JPN9 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L11C9JVI0 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L21D6R901 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L18D6R9N7 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L22D6RA61 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L17D6RBQ6 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L19D6RCP7 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L20D6RJB6 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 SMCPP49901 116 aaPredicted RBP10.31□□□□□ -0.76
USP48-209ENST00000487880 USP17L24Q0WX57 530 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 PKDCCQ504Y2 493 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 SIX5Q8N196 739 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 CRIPAKQ8N1N5 446 aa10.31□□□□□ -0.76
USP48-209ENST00000487880 DNAAF2Q9NVR5 837 aaKnown RBP10.31□□□□□ -0.76
USP48-209ENST00000487880 CAPN5O15484 640 aaPredicted RBP10.3□□□□□ -0.76
USP48-209ENST00000487880 CTC1Q2NKJ3 1217 aa10.3□□□□□ -0.76
USP48-209ENST00000487880 LARP1Q6PKG0 1096 aaKnown RBP10.3□□□□□ -0.76
USP48-209ENST00000487880 ESF1Q9H501 851 aaKnown RBP10.3□□□□□ -0.76
USP48-209ENST00000487880 LCE2BO14633 110 aa10.29□□□□□ -0.76
USP48-209ENST00000487880 GNRH1P01148 92 aa10.29□□□□□ -0.76
USP48-209ENST00000487880 SCNN1DP51172 638 aa10.29□□□□□ -0.76
USP48-209ENST00000487880 ARXQ96QS3 562 aa10.29□□□□□ -0.76
USP48-209ENST00000487880 ZMIZ1Q9ULJ6 1067 aa10.29□□□□□ -0.76
USP48-209ENST00000487880 WASLO00401 505 aaPredicted RBP10.28□□□□□ -0.76
USP48-209ENST00000487880 ZNF594Q96JF6 807 aaPredicted RBP10.28□□□□□ -0.76
USP48-209ENST00000487880 ANKMY2Q8IV38 441 aa10.27□□□□□ -0.77
USP48-209ENST00000487880 AGBL1Q96MI9 1066 aa10.27□□□□□ -0.77
USP48-209ENST00000487880 TMEM229AB2RXF0 380 aa10.26□□□□□ -0.77
USP48-209ENST00000487880 PTGIRP43119 386 aa10.26□□□□□ -0.77
USP48-209ENST00000487880 CCDC102BQ68D86 513 aa10.26□□□□□ -0.77
USP48-209ENST00000487880 TPCN2Q8NHX9 752 aa10.26□□□□□ -0.77
USP48-209ENST00000487880 ETNK1Q9HBU6 452 aa10.26□□□□□ -0.77
USP48-209ENST00000487880 NOVA2Q9UNW9 492 aaKnown RBP10.26□□□□□ -0.77
USP48-209ENST00000487880 STAU1O95793 577 aaKnown RBP10.25□□□□□ -0.77
USP48-209ENST00000487880 PSME1Q06323 249 aa10.25□□□□□ -0.77
USP48-209ENST00000487880 DPYDQ12882 1025 aa10.25□□□□□ -0.77
USP48-209ENST00000487880 ACIN1Q9UKV3 1341 aaKnown RBP10.25□□□□□ -0.77
USP48-209ENST00000487880 GDF10P55107 478 aa10.24□□□□□ -0.77
USP48-209ENST00000487880 LINC00528Q8N1L1 170 aa10.24□□□□□ -0.77
USP48-209ENST00000487880 STK32AQ8WU08 396 aa10.24□□□□□ -0.77
USP48-209ENST00000487880 TSEN34Q9BSV6 310 aaKnown RBP10.24□□□□□ -0.77
USP48-209ENST00000487880 ARHGEF10LQ9HCE6 1279 aa10.24□□□□□ -0.77
USP48-209ENST00000487880 HRH3Q9Y5N1 445 aa10.24□□□□□ -0.77
USP48-209ENST00000487880 A0A1W2PRU2 124 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 AXIN1O15169 862 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 IL2RAP01589 272 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 INHAP05111 366 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 RELBQ01201 579 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 CLN3Q13286 438 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 RETREG2Q8NC44 543 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 AAASQ9NRG9 546 aa10.23□□□□□ -0.77
USP48-209ENST00000487880 M0R2N6 131 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 SPINT1O43278 529 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 SEC13P55735 322 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 ESCO1Q5FWF5 840 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 TMEM164Q5U3C3 297 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 MRPL14Q6P1L8 145 aaKnown RBP10.22□□□□□ -0.77
USP48-209ENST00000487880 TRIM46Q7Z4K8 759 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 XAGE2Q96GT9 111 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 RAB6BQ9NRW1 208 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 ZNF358Q9NW07 568 aa10.22□□□□□ -0.77
USP48-209ENST00000487880 TMEM88BA6NKF7 163 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 ST8SIA5O15466 376 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 BMP1P13497 986 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 FAM69CQ0P6D2 419 aa10.21□□□□□ -0.77
USP48-209ENST00000487880 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms