RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CEP350Q5VT06 3117 aa21.87■■□□□ 1.09
MCF2L-228ENST00000487354 MAP3K19Q56UN5 1328 aa21.87■■□□□ 1.09
MCF2L-228ENST00000487354 CARD11Q9BXL7 1154 aa21.87■■□□□ 1.09
MCF2L-228ENST00000487354 PRIM1P49642 420 aaKnown RBP21.86■■□□□ 1.09
MCF2L-228ENST00000487354 LTV1Q96GA3 475 aaPredicted RBP21.86■■□□□ 1.09
MCF2L-228ENST00000487354 TOGARAM1Q9Y4F4 1720 aa21.86■■□□□ 1.09
MCF2L-228ENST00000487354 FBLN1P23142 703 aa21.85■■□□□ 1.09
MCF2L-228ENST00000487354 HOXC9P31274 260 aa21.85■■□□□ 1.09
MCF2L-228ENST00000487354 TERF2IPQ9NYB0 399 aa21.85■■□□□ 1.09
MCF2L-228ENST00000487354 POLD1P28340 1107 aa21.84■■□□□ 1.09
MCF2L-228ENST00000487354 KLHL34Q8N239 644 aa21.84■■□□□ 1.09
MCF2L-228ENST00000487354 PUS7Q96PZ0 661 aaKnown RBP21.84■■□□□ 1.09
MCF2L-228ENST00000487354 TFCP2L1Q9NZI6 479 aa21.84■■□□□ 1.09
MCF2L-228ENST00000487354 YBX3P16989 372 aaKnown RBP eCLIP21.83■■□□□ 1.09
MCF2L-228ENST00000487354 SYTL4Q96C24 671 aaPredicted RBP21.82■■□□□ 1.08
MCF2L-228ENST00000487354 TESK2Q96S53 571 aa21.82■■□□□ 1.08
MCF2L-228ENST00000487354 ITGB4P16144 1822 aa21.82■■□□□ 1.08
MCF2L-228ENST00000487354 RTL1A6NKG5 1358 aa21.8■■□□□ 1.08
MCF2L-228ENST00000487354 COL23A1Q86Y22 540 aaPredicted RBP21.8■■□□□ 1.08
MCF2L-228ENST00000487354 KIF20BQ96Q89 1820 aa21.79■■□□□ 1.08
MCF2L-228ENST00000487354 GIGYF1O75420 1035 aaPredicted RBP21.79■■□□□ 1.08
MCF2L-228ENST00000487354 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
MCF2L-228ENST00000487354 ZCRB1Q8TBF4 217 aaKnown RBP21.79■■□□□ 1.08
MCF2L-228ENST00000487354 CCNL1Q9UK58 526 aaPredicted RBP21.79■■□□□ 1.08
MCF2L-228ENST00000487354 UBR3Q6ZT12 1888 aa21.79■■□□□ 1.08
MCF2L-228ENST00000487354 PKD1L3Q7Z443 1732 aa21.78■■□□□ 1.08
MCF2L-228ENST00000487354 C4BP0C0L5 1744 aa21.77■■□□□ 1.08
MCF2L-228ENST00000487354 NBPF6Q5VWK0 638 aa21.76■■□□□ 1.07
MCF2L-228ENST00000487354 COG3Q96JB2 828 aa21.76■■□□□ 1.07
MCF2L-228ENST00000487354 NBPF4Q96M43 638 aa21.76■■□□□ 1.07
MCF2L-228ENST00000487354 MAP2P11137 1827 aaKnown RBP21.76■■□□□ 1.07
MCF2L-228ENST00000487354 USP47Q96K76 1375 aa21.74■■□□□ 1.07
MCF2L-228ENST00000487354 AMPHP49418 695 aa21.74■■□□□ 1.07
MCF2L-228ENST00000487354 MSL1Q68DK7 614 aa21.74■■□□□ 1.07
MCF2L-228ENST00000487354 USHBP1Q8N6Y0 703 aa21.74■■□□□ 1.07
MCF2L-228ENST00000487354 ATP10DQ9P241 1426 aa21.73■■□□□ 1.07
MCF2L-228ENST00000487354 RRS1Q15050 365 aaKnown RBP21.73■■□□□ 1.07
MCF2L-228ENST00000487354 ADCY9O60503 1353 aa21.73■■□□□ 1.07
MCF2L-228ENST00000487354 ANKRD26Q9UPS8 1709 aa21.72■■□□□ 1.07
MCF2L-228ENST00000487354 ST20-MTHFSA0A0A6YYL1 179 aa21.71■■□□□ 1.07
MCF2L-228ENST00000487354 AMIGO3Q86WK7 504 aa21.71■■□□□ 1.07
MCF2L-228ENST00000487354 CGNL1Q0VF96 1302 aa21.71■■□□□ 1.07
MCF2L-228ENST00000487354 PALLDQ8WX93 1383 aa21.7■■□□□ 1.06
MCF2L-228ENST00000487354 FYB1O15117 783 aa21.69■■□□□ 1.06
MCF2L-228ENST00000487354 GRIN3BO60391 1043 aa21.69■■□□□ 1.06
MCF2L-228ENST00000487354 TONSLQ96HA7 1378 aa21.69■■□□□ 1.06
MCF2L-228ENST00000487354 NCAPD2Q15021 1401 aa21.69■■□□□ 1.06
MCF2L-228ENST00000487354 MSH5O43196 834 aa21.68■■□□□ 1.06
MCF2L-228ENST00000487354 KIAA1551Q9HCM1 1747 aa21.67■■□□□ 1.06
MCF2L-228ENST00000487354 INSRP06213 1382 aa21.67■■□□□ 1.06
MCF2L-228ENST00000487354 GGNBP2Q9H3C7 697 aa21.67■■□□□ 1.06
MCF2L-228ENST00000487354 SMG6Q86US8 1419 aaKnown RBP21.66■■□□□ 1.06
MCF2L-228ENST00000487354 PCDH11XQ9BZA7 1347 aa21.66■■□□□ 1.06
MCF2L-228ENST00000487354 PCDH11YQ9BZA8 1340 aa21.66■■□□□ 1.06
MCF2L-228ENST00000487354 CYP27B1O15528 508 aa21.66■■□□□ 1.06
MCF2L-228ENST00000487354 CD2APQ9Y5K6 639 aa21.66■■□□□ 1.06
MCF2L-228ENST00000487354 HSP90AB2PQ58FF8 381 aa21.65■■□□□ 1.06
MCF2L-228ENST00000487354 CICQ96RK0 1608 aaPredicted RBP21.65■■□□□ 1.06
MCF2L-228ENST00000487354 KIF13BQ9NQT8 1826 aa21.64■■□□□ 1.06
MCF2L-228ENST00000487354 FLT4P35916 1363 aa21.64■■□□□ 1.06
MCF2L-228ENST00000487354 IFFO2Q5TF58 517 aa21.64■■□□□ 1.05
MCF2L-228ENST00000487354 RAPGEF4Q8WZA2 1011 aa21.64■■□□□ 1.05
MCF2L-228ENST00000487354 KIF24Q5T7B8 1368 aa21.62■■□□□ 1.05
MCF2L-228ENST00000487354 TATP17735 454 aaPredicted RBP21.62■■□□□ 1.05
MCF2L-228ENST00000487354 SMIM5Q71RC9 77 aa21.62■■□□□ 1.05
MCF2L-228ENST00000487354 MPRIPQ6WCQ1 1025 aa21.61■■□□□ 1.05
MCF2L-228ENST00000487354 FLAD1Q8NFF5 587 aa21.6■■□□□ 1.05
MCF2L-228ENST00000487354 IGSF1Q8N6C5 1336 aa21.57■■□□□ 1.04
MCF2L-228ENST00000487354 N4BP2Q86UW6 1770 aaPredicted RBP21.57■■□□□ 1.04
MCF2L-228ENST00000487354 PIGBQ92521 554 aa21.57■■□□□ 1.04
MCF2L-228ENST00000487354 NKX1-1Q15270 411 aaPredicted RBP21.56■■□□□ 1.04
MCF2L-228ENST00000487354 LINC00116Q8NCU8 138 aa21.56■■□□□ 1.04
MCF2L-228ENST00000487354 GPBP1L1Q9HC44 474 aaPredicted RBP21.56■■□□□ 1.04
MCF2L-228ENST00000487354 EMILIN1Q9Y6C2 1016 aa21.56■■□□□ 1.04
MCF2L-228ENST00000487354 BRCA1P38398 1863 aaKnown RBP21.56■■□□□ 1.04
MCF2L-228ENST00000487354 COL5A3P25940 1745 aaPredicted RBP21.55■■□□□ 1.04
MCF2L-228ENST00000487354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.55■■□□□ 1.04
MCF2L-228ENST00000487354 AK7Q96M32 723 aa21.55■■□□□ 1.04
MCF2L-228ENST00000487354 NSD3Q9BZ95 1437 aa21.55■■□□□ 1.04
MCF2L-228ENST00000487354 ZNF831Q5JPB2 1677 aa21.54■■□□□ 1.04
MCF2L-228ENST00000487354 SLC24A1O60721 1099 aa21.54■■□□□ 1.04
MCF2L-228ENST00000487354 PHF14O94880 888 aa21.54■■□□□ 1.04
MCF2L-228ENST00000487354 SMARCC1Q92922 1105 aaPredicted RBP21.54■■□□□ 1.04
MCF2L-228ENST00000487354 CARD14Q9BXL6 1004 aa21.54■■□□□ 1.04
MCF2L-228ENST00000487354 WWC3Q9ULE0 1092 aa21.54■■□□□ 1.04
MCF2L-228ENST00000487354 HSPA6P17066 643 aa21.53■■□□□ 1.04
MCF2L-228ENST00000487354 ZNF526Q8TF50 670 aaPredicted RBP21.53■■□□□ 1.04
MCF2L-228ENST00000487354 PXDNLA1KZ92 1463 aa21.52■■□□□ 1.04
MCF2L-228ENST00000487354 SSFA2P28290 1259 aa21.52■■□□□ 1.04
MCF2L-228ENST00000487354 TMF1P82094 1093 aa21.52■■□□□ 1.04
MCF2L-228ENST00000487354 ITPK1Q13572 414 aa21.52■■□□□ 1.04
MCF2L-228ENST00000487354 LOC102724428A0A0B4J2F2 783 aa21.51■■□□□ 1.03
MCF2L-228ENST00000487354 SIK1P57059 783 aa21.51■■□□□ 1.03
MCF2L-228ENST00000487354 C4AP0C0L4 1744 aa21.51■■□□□ 1.03
MCF2L-228ENST00000487354 KDRP35968 1356 aa21.5■■□□□ 1.03
MCF2L-228ENST00000487354 KIF3CO14782 793 aa21.5■■□□□ 1.03
MCF2L-228ENST00000487354 HMGB2P26583 209 aaKnown RBP21.49■■□□□ 1.03
MCF2L-228ENST00000487354 ASAP1Q9ULH1 1129 aa21.48■■□□□ 1.03
MCF2L-228ENST00000487354 MYH14Q7Z406 1995 aaKnown RBP21.48■■□□□ 1.03
MCF2L-228ENST00000487354 C10orf71Q711Q0 1435 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms