RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CEP57L1Q8IYX8 460 aa19.43■□□□□ 0.7
COL7A1-210ENST00000487017 EXOC6BQ9Y2D4 811 aa19.43■□□□□ 0.7
COL7A1-210ENST00000487017 ARHGEF11O15085 1522 aa19.43■□□□□ 0.7
COL7A1-210ENST00000487017 ABCA10Q8WWZ4 1543 aa19.43■□□□□ 0.7
COL7A1-210ENST00000487017 SKIDA1Q1XH10 827 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 PPFIBP1Q86W92 1011 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 RBM42Q9BTD8 480 aaKnown RBP19.42■□□□□ 0.7
COL7A1-210ENST00000487017 MX1P20591 662 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 CDK5RAP3Q96JB5 506 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 FAM177BA6PVY3 158 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 CASTP20810 708 aaKnown RBP19.42■□□□□ 0.7
COL7A1-210ENST00000487017 CABP4P57796 275 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 HSP90AB2PQ58FF8 381 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 NUTM1Q86Y26 1132 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 NACAP1Q9BZK3 213 aa19.42■□□□□ 0.7
COL7A1-210ENST00000487017 RRP9O43818 475 aaKnown RBP19.41■□□□□ 0.7
COL7A1-210ENST00000487017 MYL6BP14649 208 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 DUSP27Q5VZP5 1158 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 ZSCAN25Q6NSZ9 544 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 TBC1D2Q9BYX2 928 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 CCDC69A6NI79 296 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 RPRD2Q5VT52 1461 aaKnown RBP19.41■□□□□ 0.7
COL7A1-210ENST00000487017 THUMPD2Q9BTF0 503 aaKnown RBP19.41■□□□□ 0.7
COL7A1-210ENST00000487017 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
COL7A1-210ENST00000487017 BTBD11A6QL63 1104 aa19.41■□□□□ 0.7
COL7A1-210ENST00000487017 ZNHIT6Q9NWK9 470 aaKnown RBP19.4■□□□□ 0.7
COL7A1-210ENST00000487017 CUL7Q14999 1698 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 MAP3K11Q16584 847 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 SPG7Q9UQ90 795 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 CDKL5O76039 1030 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 LEKR1Q6ZMV7 388 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 GNL3LQ9NVN8 582 aaKnown RBP19.4■□□□□ 0.7
COL7A1-210ENST00000487017 MYO6Q9UM54 1294 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 CTNNA3Q9UI47 895 aa19.4■□□□□ 0.7
COL7A1-210ENST00000487017 GNAT3A8MTJ3 354 aa19.39■□□□□ 0.69
COL7A1-210ENST00000487017 RAB11FIP3O75154 756 aa19.39■□□□□ 0.69
COL7A1-210ENST00000487017 IKQ13123 557 aaPredicted RBP19.39■□□□□ 0.69
COL7A1-210ENST00000487017 KIF1BPQ96EK5 621 aa19.39■□□□□ 0.69
COL7A1-210ENST00000487017 SMARCA5O60264 1052 aaPredicted RBP19.39■□□□□ 0.69
COL7A1-210ENST00000487017 H0YHG0 523 aa19.38■□□□□ 0.69
COL7A1-210ENST00000487017 DCTN1Q14203 1278 aa19.38■□□□□ 0.69
COL7A1-210ENST00000487017 CCDC57Q2TAC2 916 aa19.38■□□□□ 0.69
COL7A1-210ENST00000487017 UPF3BQ9BZI7 483 aaKnown RBP19.38■□□□□ 0.69
COL7A1-210ENST00000487017 NUDT16Q96DE0 195 aaKnown RBP19.38■□□□□ 0.69
COL7A1-210ENST00000487017 PODXL2Q9NZ53 605 aa19.38■□□□□ 0.69
COL7A1-210ENST00000487017 FKBP4Q02790 459 aaKnown RBP eCLIP19.37■□□□□ 0.69
COL7A1-210ENST00000487017 THEMISQ8N1K5 641 aaPredicted RBP19.37■□□□□ 0.69
COL7A1-210ENST00000487017 CCAR1Q8IX12 1150 aaKnown RBP19.37■□□□□ 0.69
COL7A1-210ENST00000487017 PLEKHH1Q9ULM0 1364 aa19.37■□□□□ 0.69
COL7A1-210ENST00000487017 GLRX3O76003 335 aaKnown RBP19.36■□□□□ 0.69
COL7A1-210ENST00000487017 CALRP27797 417 aaKnown RBP19.36■□□□□ 0.69
COL7A1-210ENST00000487017 STIM1Q13586 685 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 MCM10Q7L590 875 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 CCDC61Q9Y6R9 512 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 PROSER2Q86WR7 435 aaPredicted RBP19.36■□□□□ 0.69
COL7A1-210ENST00000487017 TNPO1Q92973 898 aaKnown RBP19.36■□□□□ 0.69
COL7A1-210ENST00000487017 AXDND1Q5T1B0 1012 aaPredicted RBP19.36■□□□□ 0.69
COL7A1-210ENST00000487017 SMTNL1A8MU46 457 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 FILIP1Q7Z7B0 1213 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 CCDC83Q8IWF9 413 aa19.36■□□□□ 0.69
COL7A1-210ENST00000487017 MIS18AQ9NYP9 233 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 SSFA2P28290 1259 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 CCDC183Q5T5S1 534 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 NOL7Q9UMY1 257 aaKnown RBP19.35■□□□□ 0.69
COL7A1-210ENST00000487017 KIF14Q15058 1648 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 CC2D2AQ9P2K1 1620 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 ERLIN1O75477 346 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 TRIM27P14373 513 aa19.35■□□□□ 0.69
COL7A1-210ENST00000487017 NUP133Q8WUM0 1156 aa19.34■□□□□ 0.69
COL7A1-210ENST00000487017 CEP126Q9P2H0 1117 aa19.34■□□□□ 0.69
COL7A1-210ENST00000487017 FAM177A1Q8N128 213 aaPredicted RBP19.34■□□□□ 0.69
COL7A1-210ENST00000487017 PRPF40BQ6NWY9 871 aaKnown RBP19.33■□□□□ 0.69
COL7A1-210ENST00000487017 KRT18P05783 430 aaKnown RBP19.33■□□□□ 0.69
COL7A1-210ENST00000487017 CAMK4Q16566 473 aa19.33■□□□□ 0.68
COL7A1-210ENST00000487017 FAM135AQ9P2D6 1515 aa19.33■□□□□ 0.68
COL7A1-210ENST00000487017 RAPGEF3O95398 923 aa19.33■□□□□ 0.68
COL7A1-210ENST00000487017 STK11IPQ8N1F8 1099 aa19.33■□□□□ 0.68
COL7A1-210ENST00000487017 DDX11Q96FC9 970 aa19.33■□□□□ 0.68
COL7A1-210ENST00000487017 SCAF11Q99590 1463 aaKnown RBP19.32■□□□□ 0.68
COL7A1-210ENST00000487017 SH2B1Q9NRF2 756 aaPredicted RBP19.32■□□□□ 0.68
COL7A1-210ENST00000487017 FERMT3Q86UX7 667 aa19.32■□□□□ 0.68
COL7A1-210ENST00000487017 LUC7LQ9NQ29 371 aaKnown RBP19.32■□□□□ 0.68
COL7A1-210ENST00000487017 STRN4Q9NRL3 753 aa19.32■□□□□ 0.68
COL7A1-210ENST00000487017 EIF3JO75822 258 aaKnown RBP19.31■□□□□ 0.68
COL7A1-210ENST00000487017 TMEM132AQ24JP5 1023 aa19.31■□□□□ 0.68
COL7A1-210ENST00000487017 DEF6Q9H4E7 631 aa19.31■□□□□ 0.68
COL7A1-210ENST00000487017 TXLNBQ8N3L3 684 aa19.31■□□□□ 0.68
COL7A1-210ENST00000487017 WASF1Q92558 559 aa19.31■□□□□ 0.68
COL7A1-210ENST00000487017 SCAND2PQ9GZW5 306 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-210ENST00000487017 DHX29Q7Z478 1369 aaKnown RBP19.31■□□□□ 0.68
COL7A1-210ENST00000487017 IMMTQ16891 758 aaKnown RBP19.31■□□□□ 0.68
COL7A1-210ENST00000487017 PDCL2Q8N4E4 241 aa19.3■□□□□ 0.68
COL7A1-210ENST00000487017 SLC26A8Q96RN1 970 aa19.3■□□□□ 0.68
COL7A1-210ENST00000487017 BMP2KLQ5H9B9 411 aa19.3■□□□□ 0.68
COL7A1-210ENST00000487017 MPHOSPH8Q99549 860 aa19.3■□□□□ 0.68
COL7A1-210ENST00000487017 CCDC181Q5TID7 509 aa19.3■□□□□ 0.68
COL7A1-210ENST00000487017 IGHDP01880 384 aa19.29■□□□□ 0.68
COL7A1-210ENST00000487017 TOM1L2Q6ZVM7 507 aa19.29■□□□□ 0.68
COL7A1-210ENST00000487017 TBC1D32Q96NH3 1257 aa19.29■□□□□ 0.68
COL7A1-210ENST00000487017 DISP3Q9P2K9 1392 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms