RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ATP5J2-PTCD1G3V325 749 aa8.62□□□□□ -1.03
VPS41-213ENST00000485955 TRAK2O60296 914 aa8.62□□□□□ -1.03
VPS41-213ENST00000485955 WFS1O76024 890 aa8.62□□□□□ -1.03
VPS41-213ENST00000485955 POLMQ9NP87 494 aaPredicted RBP8.62□□□□□ -1.03
VPS41-213ENST00000485955 A0A1W2PRU2 124 aa8.61□□□□□ -1.03
VPS41-213ENST00000485955 PIK3CDO00329 1044 aa8.61□□□□□ -1.03
VPS41-213ENST00000485955 RNF135Q8IUD6 432 aa8.61□□□□□ -1.03
VPS41-213ENST00000485955 ADAMTS19Q8TE59 1207 aa8.61□□□□□ -1.03
VPS41-213ENST00000485955 SOX11P35716 441 aa8.6□□□□□ -1.03
VPS41-213ENST00000485955 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.6□□□□□ -1.03
VPS41-213ENST00000485955 FOXD4L5Q5VV16 416 aaPredicted RBP8.6□□□□□ -1.03
VPS41-213ENST00000485955 FNBP4Q8N3X1 1017 aaPredicted RBP8.6□□□□□ -1.03
VPS41-213ENST00000485955 RNF217Q8TC41 542 aa8.6□□□□□ -1.03
VPS41-213ENST00000485955 TRIM52Q96A61 297 aa8.59□□□□□ -1.03
VPS41-213ENST00000485955 DOLKQ9UPQ8 538 aa8.59□□□□□ -1.03
VPS41-213ENST00000485955 H3BM21 787 aa8.58□□□□□ -1.04
VPS41-213ENST00000485955 MEN1O00255 615 aa8.58□□□□□ -1.04
VPS41-213ENST00000485955 PTSQ03393 145 aa8.58□□□□□ -1.04
VPS41-213ENST00000485955 WWC1Q8IX03 1113 aa8.58□□□□□ -1.04
VPS41-213ENST00000485955 STAU1O95793 577 aaKnown RBP8.57□□□□□ -1.04
VPS41-213ENST00000485955 RNF144AP50876 292 aaPredicted RBP8.57□□□□□ -1.04
VPS41-213ENST00000485955 OXLD1Q5BKU9 147 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 HDGFL1Q5TGJ6 251 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 CYP2U1Q7Z449 544 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 NPAS3Q8IXF0 933 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 PLPP7Q8NBV4 271 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 ESF1Q9H501 851 aaKnown RBP8.57□□□□□ -1.04
VPS41-213ENST00000485955 ARHGEF10LQ9HCE6 1279 aa8.57□□□□□ -1.04
VPS41-213ENST00000485955 ERBB4Q15303 1308 aa8.56□□□□□ -1.04
VPS41-213ENST00000485955 PPFIA3O75145 1194 aa8.56□□□□□ -1.04
VPS41-213ENST00000485955 MYCP01106 439 aaPredicted RBP8.56□□□□□ -1.04
VPS41-213ENST00000485955 USP4Q13107 963 aa8.56□□□□□ -1.04
VPS41-213ENST00000485955 RAB6BQ9NRW1 208 aa8.56□□□□□ -1.04
VPS41-213ENST00000485955 CLN3Q13286 438 aa8.55□□□□□ -1.04
VPS41-213ENST00000485955 PRICKLE2Q7Z3G6 844 aa8.55□□□□□ -1.04
VPS41-213ENST00000485955 PROSER2Q86WR7 435 aaPredicted RBP8.55□□□□□ -1.04
VPS41-213ENST00000485955 SENP3-EIF4A1A0A087X0R7 540 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 SLC35F4A4IF30 521 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 GNRH1P01148 92 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 IL2RAP01589 272 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 MAP7D1Q3KQU3 841 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 SLC16A10Q8TF71 515 aa8.54□□□□□ -1.04
VPS41-213ENST00000485955 A6NJR5 290 aa8.53□□□□□ -1.04
VPS41-213ENST00000485955 SKIP12755 728 aa8.53□□□□□ -1.04
VPS41-213ENST00000485955 LYSMD3Q7Z3D4 306 aa8.53□□□□□ -1.04
VPS41-213ENST00000485955 CCDC155Q8N6L0 562 aa8.53□□□□□ -1.04
VPS41-213ENST00000485955 NLRP3Q96P20 1036 aa8.53□□□□□ -1.04
VPS41-213ENST00000485955 RHOQP17081 205 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 CNKSR1Q969H4 720 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 XAGE2Q96GT9 111 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 UCN2Q96RP3 112 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 ESYT1Q9BSJ8 1104 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 GRIP2Q9C0E4 1043 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 HRH3Q9Y5N1 445 aa8.52□□□□□ -1.05
VPS41-213ENST00000485955 GPC1P35052 558 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 GMPRP36959 345 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 CENPCQ03188 943 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 DEPDC4Q8N2C3 294 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 IRF7Q92985 503 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 ETNK1Q9HBU6 452 aa8.51□□□□□ -1.05
VPS41-213ENST00000485955 POU4F2Q12837 409 aa8.5□□□□□ -1.05
VPS41-213ENST00000485955 SLC27A3Q5K4L6 730 aa8.5□□□□□ -1.05
VPS41-213ENST00000485955 TBC1D9Q6ZT07 1266 aa8.5□□□□□ -1.05
VPS41-213ENST00000485955 NFATC2IPQ8NCF5 419 aa8.5□□□□□ -1.05
VPS41-213ENST00000485955 SIRT1Q96EB6 747 aa8.5□□□□□ -1.05
VPS41-213ENST00000485955 VSIG8P0DPA2 414 aa8.49□□□□□ -1.05
VPS41-213ENST00000485955 SCNN1DP51172 638 aa8.49□□□□□ -1.05
VPS41-213ENST00000485955 NCOA4Q13772 614 aa8.49□□□□□ -1.05
VPS41-213ENST00000485955 GPR161Q8N6U8 529 aaKnown RBP8.49□□□□□ -1.05
VPS41-213ENST00000485955 GLMNQ92990 594 aa8.49□□□□□ -1.05
VPS41-213ENST00000485955 PCDHGA11Q9Y5H2 935 aa8.49□□□□□ -1.05
VPS41-213ENST00000485955 WIPF1O43516 503 aa8.48□□□□□ -1.05
VPS41-213ENST00000485955 FHDC1Q9C0D6 1143 aaPredicted RBP8.48□□□□□ -1.05
VPS41-213ENST00000485955 USP17L5A8MUK1 530 aa8.47□□□□□ -1.05
VPS41-213ENST00000485955 ITGA6P23229 1130 aa8.47□□□□□ -1.05
VPS41-213ENST00000485955 NBPF10Q6P3W6 841 aaKnown RBP8.47□□□□□ -1.05
VPS41-213ENST00000485955 NBPF15Q8N660 670 aa8.47□□□□□ -1.05
VPS41-213ENST00000485955 SPATA31C2B4DYI2 1134 aa8.46□□□□□ -1.06
VPS41-213ENST00000485955 INHAP05111 366 aa8.46□□□□□ -1.06
VPS41-213ENST00000485955 EML3Q32P44 896 aa8.46□□□□□ -1.06
VPS41-213ENST00000485955 ESCO1Q5FWF5 840 aa8.46□□□□□ -1.06
VPS41-213ENST00000485955 VWA5B2Q8N398 1253 aa8.46□□□□□ -1.06
VPS41-213ENST00000485955 CUEDC1Q9NWM3 386 aaPredicted RBP8.46□□□□□ -1.06
VPS41-213ENST00000485955 TMEM229AB2RXF0 380 aa8.45□□□□□ -1.06
VPS41-213ENST00000485955 ATP9BO43861 1147 aa8.45□□□□□ -1.06
VPS41-213ENST00000485955 LZTS3O60299 673 aaPredicted RBP8.45□□□□□ -1.06
VPS41-213ENST00000485955 GDF10P55107 478 aa8.45□□□□□ -1.06
VPS41-213ENST00000485955 ZSCAN10Q96SZ4 725 aaPredicted RBP8.45□□□□□ -1.06
VPS41-213ENST00000485955 ZNF777Q9ULD5 760 aaPredicted RBP8.45□□□□□ -1.06
VPS41-213ENST00000485955 NOD1Q9Y239 953 aa8.45□□□□□ -1.06
VPS41-213ENST00000485955 USP17L3A6NCW0 530 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 USP17L4A6NCW7 530 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 GTF2IP78347 998 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 USP17L2Q6R6M4 530 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 USP17L1Q7RTZ2 530 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 NANOS1Q8WY41 292 aaKnown RBP8.44□□□□□ -1.06
VPS41-213ENST00000485955 TFIP11Q9UBB9 837 aaKnown RBP8.44□□□□□ -1.06
VPS41-213ENST00000485955 SERTAD1Q9UHV2 236 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 GTF3C3Q9Y5Q9 886 aa8.44□□□□□ -1.06
VPS41-213ENST00000485955 WASLO00401 505 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms