RNA–Protein interactions for RNA: ENST00000485124.1

TMEM40-208, Transcript of transmembrane protein 40, human

TSL 5

Gene TMEM40, Length 927 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM40-208	ENST00000485124	UTRN	P46939	3433 aa		13.8	□□□□□ -0.2
TMEM40-208	ENST00000485124	MAP3K5	Q99683	1374 aa		13.8	□□□□□ -0.2
TMEM40-208	ENST00000485124	SMG6	Q86US8	1419 aa	Known RBP	13.8	□□□□□ -0.2
TMEM40-208	ENST00000485124	YY1	P25490	414 aa		13.78	□□□□□ -0.2
TMEM40-208	ENST00000485124	ZCRB1	Q8TBF4	217 aa	Known RBP	13.78	□□□□□ -0.2
TMEM40-208	ENST00000485124	SLC16A10	Q8TF71	515 aa		13.78	□□□□□ -0.2
TMEM40-208	ENST00000485124	MEGF6	O75095	1541 aa		13.78	□□□□□ -0.2
TMEM40-208	ENST00000485124	INSR	P06213	1382 aa		13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	HMGB2	P26583	209 aa	Known RBP	13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	FLT4	P35916	1363 aa		13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	DIEXF	Q68CQ4	756 aa	Known RBP	13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	DDX54	Q8TDD1	881 aa	Known RBP	13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	LTV1	Q96GA3	475 aa	Predicted RBP	13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	LRRC4B	Q9NT99	713 aa		13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	ANKRD26	Q9UPS8	1709 aa		13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.77	□□□□□ -0.21
TMEM40-208	ENST00000485124	CHD4	Q14839	1912 aa		13.76	□□□□□ -0.21
TMEM40-208	ENST00000485124	AKT1S1	Q96B36	256 aa		13.76	□□□□□ -0.21
TMEM40-208	ENST00000485124	TUBGCP6	Q96RT7	1819 aa		13.76	□□□□□ -0.21
TMEM40-208	ENST00000485124	NSD2	O96028	1365 aa		13.75	□□□□□ -0.21
TMEM40-208	ENST00000485124	ZNF827	Q17R98	1081 aa		13.75	□□□□□ -0.21
TMEM40-208	ENST00000485124	SYT17	Q9BSW7	474 aa		13.75	□□□□□ -0.21
TMEM40-208	ENST00000485124	GGNBP2	Q9H3C7	697 aa		13.75	□□□□□ -0.21
TMEM40-208	ENST00000485124	RRS1	Q15050	365 aa	Known RBP	13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	NBPF6	Q5VWK0	638 aa		13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	RAPGEF4	Q8WZA2	1011 aa		13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	NBPF4	Q96M43	638 aa		13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	ARX	Q96QS3	562 aa		13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.74	□□□□□ -0.21
TMEM40-208	ENST00000485124	NCAPD2	Q15021	1401 aa		13.73	□□□□□ -0.21
TMEM40-208	ENST00000485124	PKD1L3	Q7Z443	1732 aa		13.73	□□□□□ -0.21
TMEM40-208	ENST00000485124	FBLN1	P23142	703 aa		13.73	□□□□□ -0.21
TMEM40-208	ENST00000485124	PRIM1	P49642	420 aa	Known RBP	13.73	□□□□□ -0.21
TMEM40-208	ENST00000485124	PCDH11X	Q9BZA7	1347 aa		13.72	□□□□□ -0.21
TMEM40-208	ENST00000485124	PCDH11Y	Q9BZA8	1340 aa		13.72	□□□□□ -0.21
TMEM40-208	ENST00000485124	TAT	P17735	454 aa	Predicted RBP	13.72	□□□□□ -0.21
TMEM40-208	ENST00000485124	PLEKHG2	Q9H7P9	1386 aa		13.71	□□□□□ -0.21
TMEM40-208	ENST00000485124	MAP2	P11137	1827 aa	Known RBP	13.71	□□□□□ -0.21
TMEM40-208	ENST00000485124	HSP90AB2P	Q58FF8	381 aa		13.71	□□□□□ -0.21
TMEM40-208	ENST00000485124	SYTL4	Q96C24	671 aa	Predicted RBP	13.71	□□□□□ -0.21
TMEM40-208	ENST00000485124	NSD3	Q9BZ95	1437 aa		13.71	□□□□□ -0.22
TMEM40-208	ENST00000485124	TAF1L	Q8IZX4	1826 aa		13.71	□□□□□ -0.22
TMEM40-208	ENST00000485124	PNPLA7	Q6ZV29	1317 aa		13.7	□□□□□ -0.22
TMEM40-208	ENST00000485124	C5	P01031	1676 aa		13.7	□□□□□ -0.22
TMEM40-208	ENST00000485124	CARD14	Q9BXL6	1004 aa		13.7	□□□□□ -0.22
TMEM40-208	ENST00000485124	ITGB4	P16144	1822 aa		13.69	□□□□□ -0.22
TMEM40-208	ENST00000485124	GOLGB1	Q14789	3259 aa	Known RBP	13.69	□□□□□ -0.22
TMEM40-208	ENST00000485124	POLD1	P28340	1107 aa		13.69	□□□□□ -0.22
TMEM40-208	ENST00000485124	TFCP2L1	Q9NZI6	479 aa		13.69	□□□□□ -0.22
TMEM40-208	ENST00000485124	CCNL1	Q9UK58	526 aa	Predicted RBP	13.69	□□□□□ -0.22
TMEM40-208	ENST00000485124	TOGARAM1	Q9Y4F4	1720 aa		13.67	□□□□□ -0.22
TMEM40-208	ENST00000485124	WASHC2A	Q641Q2	1341 aa		13.67	□□□□□ -0.22
TMEM40-208	ENST00000485124	USHBP1	Q8N6Y0	703 aa		13.67	□□□□□ -0.22
TMEM40-208	ENST00000485124	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
TMEM40-208	ENST00000485124	NKX1-1	Q15270	411 aa	Predicted RBP	13.66	□□□□□ -0.22
TMEM40-208	ENST00000485124	FLAD1	Q8NFF5	587 aa		13.66	□□□□□ -0.22
TMEM40-208	ENST00000485124	CYP27B1	O15528	508 aa		13.65	□□□□□ -0.22
TMEM40-208	ENST00000485124	SMARCC1	Q92922	1105 aa	Predicted RBP	13.65	□□□□□ -0.22
TMEM40-208	ENST00000485124	EMILIN1	Q9Y6C2	1016 aa		13.65	□□□□□ -0.22
TMEM40-208	ENST00000485124	PALLD	Q8WX93	1383 aa		13.64	□□□□□ -0.23
TMEM40-208	ENST00000485124	SPG7	Q9UQ90	795 aa		13.64	□□□□□ -0.23
TMEM40-208	ENST00000485124	C4B	P0C0L5	1744 aa		13.64	□□□□□ -0.23
TMEM40-208	ENST00000485124	KCNQ4	P56696	695 aa		13.63	□□□□□ -0.23
TMEM40-208	ENST00000485124	UBR3	Q6ZT12	1888 aa		13.63	□□□□□ -0.23
TMEM40-208	ENST00000485124	COL23A1	Q86Y22	540 aa	Predicted RBP	13.62	□□□□□ -0.23
TMEM40-208	ENST00000485124	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.62	□□□□□ -0.23
TMEM40-208	ENST00000485124	POLK	Q9UBT6	870 aa		13.62	□□□□□ -0.23
TMEM40-208	ENST00000485124	ZNF831	Q5JPB2	1677 aa		13.61	□□□□□ -0.23
TMEM40-208	ENST00000485124	MPRIP	Q6WCQ1	1025 aa		13.61	□□□□□ -0.23
TMEM40-208	ENST00000485124	EYA1	Q99502	592 aa		13.61	□□□□□ -0.23
TMEM40-208	ENST00000485124	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
TMEM40-208	ENST00000485124	GPR162	Q16538	588 aa		13.6	□□□□□ -0.23
TMEM40-208	ENST00000485124	PPM1G	O15355	546 aa	Predicted RBP	13.59	□□□□□ -0.23
TMEM40-208	ENST00000485124	IFNL2	Q8IZJ0	200 aa		13.59	□□□□□ -0.23
TMEM40-208	ENST00000485124	PIGB	Q92521	554 aa		13.59	□□□□□ -0.23
TMEM40-208	ENST00000485124	GRIN3B	O60391	1043 aa		13.58	□□□□□ -0.24
TMEM40-208	ENST00000485124	CD2AP	Q9Y5K6	639 aa		13.58	□□□□□ -0.24
TMEM40-208	ENST00000485124	IGSF1	Q8N6C5	1336 aa		13.58	□□□□□ -0.24
TMEM40-208	ENST00000485124	MSH5	O43196	834 aa		13.57	□□□□□ -0.24
TMEM40-208	ENST00000485124	PHKG2	P15735	406 aa		13.57	□□□□□ -0.24
TMEM40-208	ENST00000485124	SSFA2	P28290	1259 aa		13.57	□□□□□ -0.24
TMEM40-208	ENST00000485124	AK7	Q96M32	723 aa		13.57	□□□□□ -0.24
TMEM40-208	ENST00000485124	LOC102724428	A0A0B4J2F2	783 aa		13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	SIK1	P57059	783 aa		13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	EIF4A2	Q14240	407 aa	Known RBP	13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	KLHL34	Q8N239	644 aa		13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	NLGN2	Q8NFZ4	835 aa		13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	TMOD3	Q9NYL9	352 aa		13.56	□□□□□ -0.24
TMEM40-208	ENST00000485124	HSP90AB1	P08238	724 aa	Known RBP	13.55	□□□□□ -0.24
TMEM40-208	ENST00000485124	ERVV-2	B6SEH9	535 aa		13.54	□□□□□ -0.24
TMEM40-208	ENST00000485124	HSPA5	P11021	654 aa	Known RBP	13.54	□□□□□ -0.24
TMEM40-208	ENST00000485124	COL5A3	P25940	1745 aa	Predicted RBP	13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	AMOT	Q4VCS5	1084 aa		13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	MIER1	Q8N108	512 aa		13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	DCAF5	Q96JK2	942 aa		13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	PANK3	Q9H999	370 aa		13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	KDR	P35968	1356 aa		13.53	□□□□□ -0.24
TMEM40-208	ENST00000485124	MSL1	Q68DK7	614 aa		13.52	□□□□□ -0.25
TMEM40-208	ENST00000485124	ASAP1	Q9ULH1	1129 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms