RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 A0A1W2PP64 1363 aa13.95□□□□□ -0.18
CPSF4-213ENST00000484112 PNPLA7Q6ZV29 1317 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 MSH5O43196 834 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 FBLN1P23142 703 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 AMPHP49418 695 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 TMF1P82094 1093 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 MAP3K5Q99683 1374 aa13.94□□□□□ -0.18
CPSF4-213ENST00000484112 COG3Q96JB2 828 aa13.93□□□□□ -0.18
CPSF4-213ENST00000484112 NLGN2Q8NFZ4 835 aa13.92□□□□□ -0.18
CPSF4-213ENST00000484112 ZCRB1Q8TBF4 217 aaKnown RBP13.92□□□□□ -0.18
CPSF4-213ENST00000484112 CHD4Q14839 1912 aa13.92□□□□□ -0.18
CPSF4-213ENST00000484112 USP54Q70EL1 1684 aa13.91□□□□□ -0.18
CPSF4-213ENST00000484112 MAP3K19Q56UN5 1328 aa13.91□□□□□ -0.18
CPSF4-213ENST00000484112 HOXC9P31274 260 aa13.91□□□□□ -0.18
CPSF4-213ENST00000484112 CCNL1Q9UK58 526 aaPredicted RBP13.91□□□□□ -0.18
CPSF4-213ENST00000484112 GIGYF1O75420 1035 aaPredicted RBP13.9□□□□□ -0.18
CPSF4-213ENST00000484112 EIF4G2P78344 907 aaKnown RBP eCLIP13.9□□□□□ -0.18
CPSF4-213ENST00000484112 ANKRD36BQ8N2N9 1353 aa13.9□□□□□ -0.18
CPSF4-213ENST00000484112 USHBP1Q8N6Y0 703 aa13.89□□□□□ -0.19
CPSF4-213ENST00000484112 RRS1Q15050 365 aaKnown RBP13.88□□□□□ -0.19
CPSF4-213ENST00000484112 MSL1Q68DK7 614 aa13.88□□□□□ -0.19
CPSF4-213ENST00000484112 COL23A1Q86Y22 540 aaPredicted RBP13.88□□□□□ -0.19
CPSF4-213ENST00000484112 NSD2O96028 1365 aa13.86□□□□□ -0.19
CPSF4-213ENST00000484112 YBX3P16989 372 aaKnown RBP eCLIP13.86□□□□□ -0.19
CPSF4-213ENST00000484112 NBPF6Q5VWK0 638 aa13.86□□□□□ -0.19
CPSF4-213ENST00000484112 RAPGEF4Q8WZA2 1011 aa13.86□□□□□ -0.19
CPSF4-213ENST00000484112 NBPF4Q96M43 638 aa13.86□□□□□ -0.19
CPSF4-213ENST00000484112 GGNBP2Q9H3C7 697 aa13.86□□□□□ -0.19
CPSF4-213ENST00000484112 MEGF6O75095 1541 aa13.85□□□□□ -0.19
CPSF4-213ENST00000484112 UTRNP46939 3433 aa13.85□□□□□ -0.19
CPSF4-213ENST00000484112 DOT1LQ8TEK3 1739 aa13.85□□□□□ -0.19
CPSF4-213ENST00000484112 GRIN3BO60391 1043 aa13.85□□□□□ -0.19
CPSF4-213ENST00000484112 TATP17735 454 aaPredicted RBP13.84□□□□□ -0.19
CPSF4-213ENST00000484112 FAM208AQ9UK61 1670 aaKnown RBP13.84□□□□□ -0.19
CPSF4-213ENST00000484112 QSER1Q2KHR3 1735 aa13.84□□□□□ -0.19
CPSF4-213ENST00000484112 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
CPSF4-213ENST00000484112 RGPD2P0DJD1 1756 aa13.83□□□□□ -0.2
CPSF4-213ENST00000484112 TUBGCP6Q96RT7 1819 aa13.83□□□□□ -0.2
CPSF4-213ENST00000484112 FYB1O15117 783 aa13.82□□□□□ -0.2
CPSF4-213ENST00000484112 HSPA5P11021 654 aaKnown RBP13.82□□□□□ -0.2
CPSF4-213ENST00000484112 CGNL1Q0VF96 1302 aa13.82□□□□□ -0.2
CPSF4-213ENST00000484112 SMG6Q86US8 1419 aaKnown RBP13.81□□□□□ -0.2
CPSF4-213ENST00000484112 LY75O60449 1722 aa13.81□□□□□ -0.2
CPSF4-213ENST00000484112 HSP90AB2PQ58FF8 381 aa13.81□□□□□ -0.2
CPSF4-213ENST00000484112 RTL1A6NKG5 1358 aa13.81□□□□□ -0.2
CPSF4-213ENST00000484112 FLAD1Q8NFF5 587 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 WWC3Q9ULE0 1092 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 COL24A1Q17RW2 1714 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 PCDH11XQ9BZA7 1347 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 PCDH11YQ9BZA8 1340 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 PALLDQ8WX93 1383 aa13.8□□□□□ -0.2
CPSF4-213ENST00000484112 SHANK3Q9BYB0 1731 aa13.79□□□□□ -0.2
CPSF4-213ENST00000484112 PHF14O94880 888 aa13.79□□□□□ -0.2
CPSF4-213ENST00000484112 AK7Q96M32 723 aa13.79□□□□□ -0.2
CPSF4-213ENST00000484112 CD2APQ9Y5K6 639 aa13.79□□□□□ -0.2
CPSF4-213ENST00000484112 SMIM5Q71RC9 77 aa13.78□□□□□ -0.2
CPSF4-213ENST00000484112 ZNF526Q8TF50 670 aaPredicted RBP13.78□□□□□ -0.2
CPSF4-213ENST00000484112 ATP10DQ9P241 1426 aa13.78□□□□□ -0.2
CPSF4-213ENST00000484112 CYP27B1O15528 508 aa13.77□□□□□ -0.21
CPSF4-213ENST00000484112 HMGB2P26583 209 aaKnown RBP13.77□□□□□ -0.21
CPSF4-213ENST00000484112 GPBP1L1Q9HC44 474 aaPredicted RBP13.77□□□□□ -0.21
CPSF4-213ENST00000484112 INSRP06213 1382 aa13.76□□□□□ -0.21
CPSF4-213ENST00000484112 PPM1GO15355 546 aaPredicted RBP13.76□□□□□ -0.21
CPSF4-213ENST00000484112 SMARCC1Q92922 1105 aaPredicted RBP13.76□□□□□ -0.21
CPSF4-213ENST00000484112 FLT4P35916 1363 aa13.75□□□□□ -0.21
CPSF4-213ENST00000484112 AMIGO3Q86WK7 504 aa13.75□□□□□ -0.21
CPSF4-213ENST00000484112 PIGBQ92521 554 aa13.75□□□□□ -0.21
CPSF4-213ENST00000484112 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.74□□□□□ -0.21
CPSF4-213ENST00000484112 EMILIN1Q9Y6C2 1016 aa13.74□□□□□ -0.21
CPSF4-213ENST00000484112 C5P01031 1676 aa13.74□□□□□ -0.21
CPSF4-213ENST00000484112 IGSF1Q8N6C5 1336 aa13.73□□□□□ -0.21
CPSF4-213ENST00000484112 IFFO2Q5TF58 517 aa13.73□□□□□ -0.21
CPSF4-213ENST00000484112 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
CPSF4-213ENST00000484112 LOC102724428A0A0B4J2F2 783 aa13.71□□□□□ -0.21
CPSF4-213ENST00000484112 SIK1P57059 783 aa13.71□□□□□ -0.21
CPSF4-213ENST00000484112 LINC00116Q8NCU8 138 aa13.71□□□□□ -0.21
CPSF4-213ENST00000484112 CARD14Q9BXL6 1004 aa13.71□□□□□ -0.21
CPSF4-213ENST00000484112 TMOD3Q9NYL9 352 aa13.71□□□□□ -0.21
CPSF4-213ENST00000484112 C4BP0C0L5 1744 aa13.7□□□□□ -0.22
CPSF4-213ENST00000484112 GNPATO15228 680 aa13.7□□□□□ -0.22
CPSF4-213ENST00000484112 SSFA2P28290 1259 aa13.7□□□□□ -0.22
CPSF4-213ENST00000484112 ATP6V1AP38606 617 aa13.7□□□□□ -0.22
CPSF4-213ENST00000484112 KIF24Q5T7B8 1368 aa13.7□□□□□ -0.22
CPSF4-213ENST00000484112 TAF1LQ8IZX4 1826 aa13.69□□□□□ -0.22
CPSF4-213ENST00000484112 HSPA6P17066 643 aa13.69□□□□□ -0.22
CPSF4-213ENST00000484112 ZEB1P37275 1124 aaPredicted RBP13.69□□□□□ -0.22
CPSF4-213ENST00000484112 NKX1-1Q15270 411 aaPredicted RBP13.69□□□□□ -0.22
CPSF4-213ENST00000484112 EYA1Q99502 592 aa13.69□□□□□ -0.22
CPSF4-213ENST00000484112 ASAP1Q9ULH1 1129 aa13.69□□□□□ -0.22
CPSF4-213ENST00000484112 NSD3Q9BZ95 1437 aa13.69□□□□□ -0.22
CPSF4-213ENST00000484112 KIF7Q2M1P5 1343 aa13.68□□□□□ -0.22
CPSF4-213ENST00000484112 ITPK1Q13572 414 aa13.68□□□□□ -0.22
CPSF4-213ENST00000484112 KIF20BQ96Q89 1820 aa13.68□□□□□ -0.22
CPSF4-213ENST00000484112 ADCY9O60503 1353 aa13.68□□□□□ -0.22
CPSF4-213ENST00000484112 TOGARAM1Q9Y4F4 1720 aa13.67□□□□□ -0.22
CPSF4-213ENST00000484112 ITGB4P16144 1822 aa13.67□□□□□ -0.22
CPSF4-213ENST00000484112 IFNL2Q8IZJ0 200 aa13.67□□□□□ -0.22
CPSF4-213ENST00000484112 POLR3GLQ9BT43 218 aa13.67□□□□□ -0.22
CPSF4-213ENST00000484112 WASHC2AQ641Q2 1341 aa13.66□□□□□ -0.22
CPSF4-213ENST00000484112 MMP10P09238 476 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms