RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 GNAT3A8MTJ3 354 aa33.76■■■■□ 3
SHOX2-204ENST00000483851 CHL1O00533 1208 aa33.76■■■■□ 3
SHOX2-204ENST00000483851 RGPD5Q99666 1765 aa33.76■■■■□ 3
SHOX2-204ENST00000483851 MAP3K5Q99683 1374 aa33.75■■■□□ 2.99
SHOX2-204ENST00000483851 MS4A1P11836 297 aa33.74■■■□□ 2.99
SHOX2-204ENST00000483851 BRPF1P55201 1214 aaPredicted RBP33.74■■■□□ 2.99
SHOX2-204ENST00000483851 MCM10Q7L590 875 aa33.74■■■□□ 2.99
SHOX2-204ENST00000483851 LRRC37A3O60309 1634 aa33.74■■■□□ 2.99
SHOX2-204ENST00000483851 HAP1P54257 671 aaPredicted RBP33.73■■■□□ 2.99
SHOX2-204ENST00000483851 PLEKHG2Q9H7P9 1386 aa33.73■■■□□ 2.99
SHOX2-204ENST00000483851 PLEKHG5O94827 1062 aa33.73■■■□□ 2.99
SHOX2-204ENST00000483851 USHBP1Q8N6Y0 703 aa33.73■■■□□ 2.99
SHOX2-204ENST00000483851 AMOTQ4VCS5 1084 aa33.72■■■□□ 2.99
SHOX2-204ENST00000483851 LRRC59Q96AG4 307 aaKnown RBP33.72■■■□□ 2.99
SHOX2-204ENST00000483851 SMC4Q9NTJ3 1288 aa33.71■■■□□ 2.99
SHOX2-204ENST00000483851 AAMPQ13685 434 aa33.71■■■□□ 2.99
SHOX2-204ENST00000483851 CABLES1Q8TDN4 633 aa33.71■■■□□ 2.99
SHOX2-204ENST00000483851 SSH1Q8WYL5 1049 aa33.71■■■□□ 2.99
SHOX2-204ENST00000483851 KIAA0232Q92628 1395 aa33.7■■■□□ 2.99
SHOX2-204ENST00000483851 VAMP4O75379 141 aa33.7■■■□□ 2.99
SHOX2-204ENST00000483851 PLEKHO1Q53GL0 409 aaPredicted RBP33.69■■■□□ 2.98
SHOX2-204ENST00000483851 ZKSCAN2Q63HK3 967 aa33.69■■■□□ 2.98
SHOX2-204ENST00000483851 FRAT1Q92837 279 aaPredicted RBP33.69■■■□□ 2.98
SHOX2-204ENST00000483851 BABAM1Q9NWV8 329 aa33.69■■■□□ 2.98
SHOX2-204ENST00000483851 KIF16BQ96L93 1317 aa33.69■■■□□ 2.98
SHOX2-204ENST00000483851 BCL2L13Q9BXK5 485 aa33.67■■■□□ 2.98
SHOX2-204ENST00000483851 ABCA3Q99758 1704 aa33.66■■■□□ 2.98
SHOX2-204ENST00000483851 TWISTNBQ3B726 338 aaPredicted RBP33.66■■■□□ 2.98
SHOX2-204ENST00000483851 AEBP2Q6ZN18 517 aaPredicted RBP33.66■■■□□ 2.98
SHOX2-204ENST00000483851 IPO8O15397 1037 aaKnown RBP33.65■■■□□ 2.98
SHOX2-204ENST00000483851 AHDC1Q5TGY3 1603 aaPredicted RBP33.64■■■□□ 2.98
SHOX2-204ENST00000483851 ROBO1Q9Y6N7 1651 aa33.62■■■□□ 2.97
SHOX2-204ENST00000483851 AKAP4Q5JQC9 854 aa33.62■■■□□ 2.97
SHOX2-204ENST00000483851 CEMIPQ8WUJ3 1361 aa33.61■■■□□ 2.97
SHOX2-204ENST00000483851 TSPYL6Q8N831 410 aa33.61■■■□□ 2.97
SHOX2-204ENST00000483851 C8orf58Q8NAV2 365 aa33.61■■■□□ 2.97
SHOX2-204ENST00000483851 IL17REQ8NFR9 667 aa33.61■■■□□ 2.97
SHOX2-204ENST00000483851 OVOS2A0A0G2JMS6 1433 aa33.6■■■□□ 2.97
SHOX2-204ENST00000483851 ATF7IPQ6VMQ6 1270 aa33.59■■■□□ 2.97
SHOX2-204ENST00000483851 PANK1Q8TE04 598 aa33.59■■■□□ 2.97
SHOX2-204ENST00000483851 ARHGAP45Q92619 1136 aa33.59■■■□□ 2.97
SHOX2-204ENST00000483851 DZIP1LQ8IYY4 767 aaKnown RBP33.58■■■□□ 2.97
SHOX2-204ENST00000483851 TSPYL4Q9UJ04 414 aa33.58■■■□□ 2.97
SHOX2-204ENST00000483851 SOS1Q07889 1333 aaPredicted RBP33.57■■■□□ 2.97
SHOX2-204ENST00000483851 PRDM11Q9NQV5 511 aa33.57■■■□□ 2.96
SHOX2-204ENST00000483851 NLRP2Q9NX02 1062 aa33.57■■■□□ 2.96
SHOX2-204ENST00000483851 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.57■■■□□ 2.96
SHOX2-204ENST00000483851 TAF7Q15545 349 aaPredicted RBP33.56■■■□□ 2.96
SHOX2-204ENST00000483851 CHRNA2Q15822 529 aa33.56■■■□□ 2.96
SHOX2-204ENST00000483851 ZNF530Q6P9A1 599 aaPredicted RBP33.56■■■□□ 2.96
SHOX2-204ENST00000483851 MRPL50Q8N5N7 158 aaKnown RBP33.56■■■□□ 2.96
SHOX2-204ENST00000483851 NOB1Q9ULX3 412 aaKnown RBP33.56■■■□□ 2.96
SHOX2-204ENST00000483851 CSB-PGBD3P0DP91 1061 aa33.55■■■□□ 2.96
SHOX2-204ENST00000483851 RAPGEF4Q8WZA2 1011 aa33.55■■■□□ 2.96
SHOX2-204ENST00000483851 COG6Q9Y2V7 657 aa33.55■■■□□ 2.96
SHOX2-204ENST00000483851 FTSJ3Q8IY81 847 aaKnown RBP33.54■■■□□ 2.96
SHOX2-204ENST00000483851 TRIM27P14373 513 aa33.54■■■□□ 2.96
SHOX2-204ENST00000483851 C1orf141Q5JVX7 400 aa33.54■■■□□ 2.96
SHOX2-204ENST00000483851 RLBP1P12271 317 aa33.52■■■□□ 2.96
SHOX2-204ENST00000483851 MVPQ14764 893 aaKnown RBP33.52■■■□□ 2.96
SHOX2-204ENST00000483851 COL22A1Q8NFW1 1626 aaPredicted RBP33.51■■■□□ 2.96
SHOX2-204ENST00000483851 ELL2O00472 640 aaPredicted RBP33.51■■■□□ 2.96
SHOX2-204ENST00000483851 TATP17735 454 aaPredicted RBP33.51■■■□□ 2.96
SHOX2-204ENST00000483851 CLUAP1Q96AJ1 413 aa33.5■■■□□ 2.95
SHOX2-204ENST00000483851 WDR17Q8IZU2 1322 aa33.5■■■□□ 2.95
SHOX2-204ENST00000483851 ADAMTS7Q9UKP4 1686 aa33.5■■■□□ 2.95
SHOX2-204ENST00000483851 COL5A2P05997 1499 aaPredicted RBP33.48■■■□□ 2.95
SHOX2-204ENST00000483851 SPG7Q9UQ90 795 aa33.48■■■□□ 2.95
SHOX2-204ENST00000483851 CENPQQ7L2Z9 268 aaPredicted RBP33.47■■■□□ 2.95
SHOX2-204ENST00000483851 TNNQ9UQP3 1299 aa33.46■■■□□ 2.95
SHOX2-204ENST00000483851 MIS18AQ9NYP9 233 aa33.46■■■□□ 2.95
SHOX2-204ENST00000483851 DDX19BQ9UMR2 479 aa33.46■■■□□ 2.95
SHOX2-204ENST00000483851 VIRMAQ69YN4 1812 aaKnown RBP33.45■■■□□ 2.95
SHOX2-204ENST00000483851 KDM2BQ8NHM5 1336 aa33.45■■■□□ 2.95
SHOX2-204ENST00000483851 PKD1L3Q7Z443 1732 aa33.45■■■□□ 2.95
SHOX2-204ENST00000483851 RNMTO43148 476 aaKnown RBP33.44■■■□□ 2.94
SHOX2-204ENST00000483851 MEGF6O75095 1541 aa33.43■■■□□ 2.94
SHOX2-204ENST00000483851 KDM3BQ7LBC6 1761 aa33.43■■■□□ 2.94
SHOX2-204ENST00000483851 TOM1O60784 492 aa33.43■■■□□ 2.94
SHOX2-204ENST00000483851 TEFQ10587 303 aa33.43■■■□□ 2.94
SHOX2-204ENST00000483851 API5Q9BZZ5 524 aaKnown RBP33.43■■■□□ 2.94
SHOX2-204ENST00000483851 LGR6Q9HBX8 967 aa33.43■■■□□ 2.94
SHOX2-204ENST00000483851 KRT24Q2M2I5 525 aa33.42■■■□□ 2.94
SHOX2-204ENST00000483851 CHMP4AQ9BY43 222 aa33.41■■■□□ 2.94
SHOX2-204ENST00000483851 CHMP4BQ9H444 224 aaKnown RBP33.41■■■□□ 2.94
SHOX2-204ENST00000483851 PARP4Q9UKK3 1724 aaKnown RBP33.4■■■□□ 2.94
SHOX2-204ENST00000483851 CARD10Q9BWT7 1032 aa33.39■■■□□ 2.94
SHOX2-204ENST00000483851 MPRIPQ6WCQ1 1025 aa33.39■■■□□ 2.94
SHOX2-204ENST00000483851 COL14A1Q05707 1796 aaKnown RBP33.38■■■□□ 2.93
SHOX2-204ENST00000483851 PTPRCP08575 1304 aa33.38■■■□□ 2.93
SHOX2-204ENST00000483851 CACNA1FO60840 1977 aa33.38■■■□□ 2.93
SHOX2-204ENST00000483851 SIPA1L3O60292 1781 aaPredicted RBP33.38■■■□□ 2.93
SHOX2-204ENST00000483851 TOM1L2Q6ZVM7 507 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 IFNL2Q8IZJ0 200 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 PHLPP1O60346 1717 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 ABCC4O15439 1325 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 HOXB7P09629 217 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 SCN11AQ9UI33 1791 aa33.37■■■□□ 2.93
SHOX2-204ENST00000483851 COL16A1Q07092 1604 aaPredicted RBP33.36■■■□□ 2.93
SHOX2-204ENST00000483851 TMEM57Q8N5G2 664 aa33.36■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms