RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 NUTM2BA6NNL0 878 aaPredicted RBP12.76□□□□□ -0.37
LIMK1-205ENST00000483414 NUTM2EB1AL46 878 aaPredicted RBP12.76□□□□□ -0.37
LIMK1-205ENST00000483414 NUTM2AQ8IVF1 878 aaPredicted RBP12.76□□□□□ -0.37
LIMK1-205ENST00000483414 VPS72Q15906 364 aa12.76□□□□□ -0.37
LIMK1-205ENST00000483414 TNS2Q63HR2 1409 aa12.76□□□□□ -0.37
LIMK1-205ENST00000483414 CICQ96RK0 1608 aaPredicted RBP12.75□□□□□ -0.37
LIMK1-205ENST00000483414 USHBP1Q8N6Y0 703 aa12.75□□□□□ -0.37
LIMK1-205ENST00000483414 SALL2Q9Y467 1007 aaPredicted RBP12.75□□□□□ -0.37
LIMK1-205ENST00000483414 SULT6B1Q6IMI4 303 aa12.75□□□□□ -0.37
LIMK1-205ENST00000483414 NHSQ6T4R5 1651 aa12.74□□□□□ -0.37
LIMK1-205ENST00000483414 ONECUT3O60422 494 aaPredicted RBP12.74□□□□□ -0.37
LIMK1-205ENST00000483414 HMOX1P09601 288 aa12.74□□□□□ -0.37
LIMK1-205ENST00000483414 B4GALNT3Q6L9W6 998 aa12.74□□□□□ -0.37
LIMK1-205ENST00000483414 AFF2P51816 1311 aa12.74□□□□□ -0.37
LIMK1-205ENST00000483414 BARGINQ6ZT62 677 aa12.73□□□□□ -0.37
LIMK1-205ENST00000483414 ILDR1Q86SU0 546 aaPredicted RBP12.73□□□□□ -0.37
LIMK1-205ENST00000483414 KDM6AO15550 1401 aaPredicted RBP12.73□□□□□ -0.37
LIMK1-205ENST00000483414 C8orf37Q96NL8 207 aa12.73□□□□□ -0.37
LIMK1-205ENST00000483414 ANO8Q9HCE9 1232 aaPredicted RBP12.73□□□□□ -0.37
LIMK1-205ENST00000483414 U2AF1L5P0DN76 240 aaPredicted RBP12.73□□□□□ -0.37
LIMK1-205ENST00000483414 PRKAR2BP31323 418 aa12.73□□□□□ -0.37
LIMK1-205ENST00000483414 U2AF1Q01081 240 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIMK1-205ENST00000483414 RUNDC1Q96C34 613 aa12.73□□□□□ -0.37
LIMK1-205ENST00000483414 LTV1Q96GA3 475 aaPredicted RBP12.72□□□□□ -0.37
LIMK1-205ENST00000483414 NUDCQ9Y266 331 aa12.72□□□□□ -0.37
LIMK1-205ENST00000483414 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
LIMK1-205ENST00000483414 THRAP3Q9Y2W1 955 aaKnown RBP12.72□□□□□ -0.37
LIMK1-205ENST00000483414 CEMIPQ8WUJ3 1361 aa12.72□□□□□ -0.37
LIMK1-205ENST00000483414 CCDC146Q8IYE0 955 aa12.71□□□□□ -0.37
LIMK1-205ENST00000483414 ZNF831Q5JPB2 1677 aa12.71□□□□□ -0.37
LIMK1-205ENST00000483414 BCL9O00512 1426 aa12.71□□□□□ -0.37
LIMK1-205ENST00000483414 U2SURPO15042 1029 aaKnown RBP12.71□□□□□ -0.38
LIMK1-205ENST00000483414 CCDC27Q2M243 656 aa12.71□□□□□ -0.38
LIMK1-205ENST00000483414 ZBTB7CA1YPR0 619 aa12.7□□□□□ -0.38
LIMK1-205ENST00000483414 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 WDR43Q15061 677 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 MTHFSDQ2M296 383 aaKnown RBP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 CCDC136Q96JN2 1154 aa12.7□□□□□ -0.38
LIMK1-205ENST00000483414 TNS1Q9HBL0 1735 aaKnown RBP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 RTN4Q9NQC3 1192 aaKnown RBP12.7□□□□□ -0.38
LIMK1-205ENST00000483414 USP21Q9UK80 565 aa12.7□□□□□ -0.38
LIMK1-205ENST00000483414 C5P01031 1676 aa12.69□□□□□ -0.38
LIMK1-205ENST00000483414 TCP11L2Q8N4U5 519 aa12.69□□□□□ -0.38
LIMK1-205ENST00000483414 TMPOP42166 694 aaKnown RBP12.69□□□□□ -0.38
LIMK1-205ENST00000483414 STRN4Q9NRL3 753 aa12.69□□□□□ -0.38
LIMK1-205ENST00000483414 LY75O60449 1722 aa12.69□□□□□ -0.38
LIMK1-205ENST00000483414 TOM1L2Q6ZVM7 507 aa12.68□□□□□ -0.38
LIMK1-205ENST00000483414 NGLY1Q96IV0 654 aa12.68□□□□□ -0.38
LIMK1-205ENST00000483414 ZBED9Q6R2W3 1325 aa12.68□□□□□ -0.38
LIMK1-205ENST00000483414 RGS12O14924 1447 aa12.68□□□□□ -0.38
LIMK1-205ENST00000483414 DEKP35659 375 aaKnown RBP12.68□□□□□ -0.38
LIMK1-205ENST00000483414 APAF1O14727 1248 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 NFE2L2Q16236 605 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 NLRP2Q9NX02 1062 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 BTAF1O14981 1849 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 CYP27B1O15528 508 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 NKX1-1Q15270 411 aaPredicted RBP12.67□□□□□ -0.38
LIMK1-205ENST00000483414 GJD4Q96KN9 370 aaPredicted RBP12.67□□□□□ -0.38
LIMK1-205ENST00000483414 LAMB4A4D0S4 1761 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 RGPD3A6NKT7 1758 aaPredicted RBP12.67□□□□□ -0.38
LIMK1-205ENST00000483414 RGPD4Q7Z3J3 1758 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 MAP3K5Q99683 1374 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 IL2RBP14784 551 aa12.67□□□□□ -0.38
LIMK1-205ENST00000483414 TRMT2AQ8IZ69 625 aaKnown RBP12.66□□□□□ -0.38
LIMK1-205ENST00000483414 RREB1Q92766 1687 aa12.66□□□□□ -0.38
LIMK1-205ENST00000483414 TJP1Q07157 1748 aa12.66□□□□□ -0.38
LIMK1-205ENST00000483414 COL5A3P25940 1745 aaPredicted RBP12.65□□□□□ -0.38
LIMK1-205ENST00000483414 KCPQ6ZWJ8 1503 aa12.65□□□□□ -0.38
LIMK1-205ENST00000483414 PPP4R2Q9NY27 417 aa12.65□□□□□ -0.38
LIMK1-205ENST00000483414 WWC1Q8IX03 1113 aa12.65□□□□□ -0.38
LIMK1-205ENST00000483414 PHKG2P15735 406 aa12.64□□□□□ -0.39
LIMK1-205ENST00000483414 EVA1CP58658 441 aa12.64□□□□□ -0.39
LIMK1-205ENST00000483414 SPINK5Q9NQ38 1064 aaPredicted RBP12.64□□□□□ -0.39
LIMK1-205ENST00000483414 TRPC5Q9UL62 973 aaPredicted RBP12.64□□□□□ -0.39
LIMK1-205ENST00000483414 AMOTQ4VCS5 1084 aa12.64□□□□□ -0.39
LIMK1-205ENST00000483414 ZNF853P0CG23 659 aa12.64□□□□□ -0.39
LIMK1-205ENST00000483414 PNNQ9H307 717 aaKnown RBP12.64□□□□□ -0.39
LIMK1-205ENST00000483414 HTATSF1O43719 755 aaKnown RBP12.63□□□□□ -0.39
LIMK1-205ENST00000483414 CSB-PGBD3P0DP91 1061 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 NGEFQ8N5V2 710 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 CDCA7Q9BWT1 371 aaPredicted RBP12.63□□□□□ -0.39
LIMK1-205ENST00000483414 IL17REQ8NFR9 667 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 TAF1LQ8IZX4 1826 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 PCDH11XQ9BZA7 1347 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 PCDH11YQ9BZA8 1340 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 AKAP4Q5JQC9 854 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 MEX3CQ5U5Q3 659 aaKnown RBP12.63□□□□□ -0.39
LIMK1-205ENST00000483414 POTEAQ6S8J7 498 aa12.63□□□□□ -0.39
LIMK1-205ENST00000483414 RRP7AQ9Y3A4 280 aaKnown RBP12.62□□□□□ -0.39
LIMK1-205ENST00000483414 ZNF772Q68DY9 489 aaPredicted RBP12.62□□□□□ -0.39
LIMK1-205ENST00000483414 GAS2L2Q8NHY3 880 aa12.62□□□□□ -0.39
LIMK1-205ENST00000483414 TATP17735 454 aaPredicted RBP12.61□□□□□ -0.39
LIMK1-205ENST00000483414 QTRT2Q9H974 415 aaKnown RBP12.61□□□□□ -0.39
LIMK1-205ENST00000483414 HEG1Q9ULI3 1381 aa12.61□□□□□ -0.39
LIMK1-205ENST00000483414 MARCH10Q8NA82 808 aaPredicted RBP12.61□□□□□ -0.39
LIMK1-205ENST00000483414 ZCRB1Q8TBF4 217 aaKnown RBP12.61□□□□□ -0.39
LIMK1-205ENST00000483414 IL16Q14005 1332 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 RIPK4P57078 832 aa12.6□□□□□ -0.39
LIMK1-205ENST00000483414 FAM98CQ17RN3 349 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms