RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 KIF7Q2M1P5 1343 aa24.16■■□□□ 1.46
COL9A3-212ENST00000481800 NUP188Q5SRE5 1749 aa24.15■■□□□ 1.46
COL9A3-212ENST00000481800 MORC1Q86VD1 984 aa24.15■■□□□ 1.46
COL9A3-212ENST00000481800 STK32BQ9NY57 414 aa24.14■■□□□ 1.45
COL9A3-212ENST00000481800 RGPD3A6NKT7 1758 aaPredicted RBP24.14■■□□□ 1.45
COL9A3-212ENST00000481800 RGPD4Q7Z3J3 1758 aa24.14■■□□□ 1.45
COL9A3-212ENST00000481800 PRIM1P49642 420 aaKnown RBP24.13■■□□□ 1.45
COL9A3-212ENST00000481800 ANO8Q9HCE9 1232 aaPredicted RBP24.13■■□□□ 1.45
COL9A3-212ENST00000481800 SRCAPQ6ZRS2 3230 aa24.12■■□□□ 1.45
COL9A3-212ENST00000481800 NHSQ6T4R5 1651 aa24.12■■□□□ 1.45
COL9A3-212ENST00000481800 PCDH11XQ9BZA7 1347 aa24.11■■□□□ 1.45
COL9A3-212ENST00000481800 PCDH11YQ9BZA8 1340 aa24.11■■□□□ 1.45
COL9A3-212ENST00000481800 LRP5O75197 1615 aa24.11■■□□□ 1.45
COL9A3-212ENST00000481800 EYA1Q99502 592 aa24.11■■□□□ 1.45
COL9A3-212ENST00000481800 RGPD2P0DJD1 1756 aa24.1■■□□□ 1.45
COL9A3-212ENST00000481800 EIF4A2Q14240 407 aaKnown RBP24.08■■□□□ 1.45
COL9A3-212ENST00000481800 SLC15A2Q16348 729 aa24.07■■□□□ 1.44
COL9A3-212ENST00000481800 SPON1Q9HCB6 807 aa24.07■■□□□ 1.44
COL9A3-212ENST00000481800 SPG7Q9UQ90 795 aa24.07■■□□□ 1.44
COL9A3-212ENST00000481800 SLC27A3Q5K4L6 730 aa24.05■■□□□ 1.44
COL9A3-212ENST00000481800 NCAPD2Q15021 1401 aa24.04■■□□□ 1.44
COL9A3-212ENST00000481800 CYP27B1O15528 508 aa24.04■■□□□ 1.44
COL9A3-212ENST00000481800 AMER1Q5JTC6 1135 aaPredicted RBP24.04■■□□□ 1.44
COL9A3-212ENST00000481800 ANKRD26Q9UPS8 1709 aa24.04■■□□□ 1.44
COL9A3-212ENST00000481800 LRRC4BQ9NT99 713 aa24.02■■□□□ 1.44
COL9A3-212ENST00000481800 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.02■■□□□ 1.441e-6■□□□□ 9.6
COL9A3-212ENST00000481800 PPP1R1BQ9UD71 204 aaPredicted RBP24.02■■□□□ 1.44
COL9A3-212ENST00000481800 BTAF1O14981 1849 aa24.01■■□□□ 1.43
COL9A3-212ENST00000481800 MAP2P11137 1827 aaKnown RBP24.01■■□□□ 1.43
COL9A3-212ENST00000481800 ZBTB7AO95365 584 aa23.99■■□□□ 1.43
COL9A3-212ENST00000481800 MPRIPQ6WCQ1 1025 aa23.99■■□□□ 1.43
COL9A3-212ENST00000481800 PDGFDQ9GZP0 370 aaPredicted RBP23.99■■□□□ 1.43
COL9A3-212ENST00000481800 SHANK3Q9BYB0 1731 aa23.98■■□□□ 1.43
COL9A3-212ENST00000481800 PER1O15534 1290 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-212ENST00000481800 CC2D1BQ5T0F9 858 aaKnown RBP23.98■■□□□ 1.43
COL9A3-212ENST00000481800 CCNL1Q9UK58 526 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-212ENST00000481800 IGSF1Q8N6C5 1336 aa23.98■■□□□ 1.43
COL9A3-212ENST00000481800 NKX1-1Q15270 411 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-212ENST00000481800 IFNL2Q8IZJ0 200 aa23.97■■□□□ 1.43
COL9A3-212ENST00000481800 DOT1LQ8TEK3 1739 aa23.97■■□□□ 1.43
COL9A3-212ENST00000481800 KAT6BQ8WYB5 2073 aa23.96■■□□□ 1.43
COL9A3-212ENST00000481800 KCNQ4P56696 695 aa23.96■■□□□ 1.43
COL9A3-212ENST00000481800 ZNF827Q17R98 1081 aa23.96■■□□□ 1.43
COL9A3-212ENST00000481800 ATF5Q9Y2D1 282 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-212ENST00000481800 PHKG2P15735 406 aa23.94■■□□□ 1.42
COL9A3-212ENST00000481800 CNGB1Q14028 1251 aaPredicted RBP23.94■■□□□ 1.42
COL9A3-212ENST00000481800 AKT1S1Q96B36 256 aa23.94■■□□□ 1.42
COL9A3-212ENST00000481800 HMGB2P26583 209 aaKnown RBP23.93■■□□□ 1.42
COL9A3-212ENST00000481800 MTHFSP49914 203 aa23.93■■□□□ 1.42
COL9A3-212ENST00000481800 PLEKHO1Q53GL0 409 aaPredicted RBP23.93■■□□□ 1.42
COL9A3-212ENST00000481800 SMARCC1Q92922 1105 aaPredicted RBP23.93■■□□□ 1.42
COL9A3-212ENST00000481800 MTFR1LQ9H019 292 aa23.93■■□□□ 1.42
COL9A3-212ENST00000481800 TFCP2L1Q9NZI6 479 aa23.93■■□□□ 1.42
COL9A3-212ENST00000481800 PLEKHG2Q9H7P9 1386 aa23.92■■□□□ 1.42
COL9A3-212ENST00000481800 IL13P35225 146 aa23.91■■□□□ 1.42
COL9A3-212ENST00000481800 AMOTQ4VCS5 1084 aa23.91■■□□□ 1.42
COL9A3-212ENST00000481800 SULT6B1Q6IMI4 303 aa23.91■■□□□ 1.42
COL9A3-212ENST00000481800 PIGBQ92521 554 aa23.91■■□□□ 1.42
COL9A3-212ENST00000481800 PALLDQ8WX93 1383 aa23.91■■□□□ 1.42
COL9A3-212ENST00000481800 PKD1L3Q7Z443 1732 aa23.9■■□□□ 1.42
COL9A3-212ENST00000481800 TMOD3Q9NYL9 352 aa23.9■■□□□ 1.42
COL9A3-212ENST00000481800 PAPPAQ13219 1627 aa23.9■■□□□ 1.42
COL9A3-212ENST00000481800 HSP90AB1P08238 724 aaKnown RBP23.89■■□□□ 1.41
COL9A3-212ENST00000481800 AEBP1Q8IUX7 1158 aa23.89■■□□□ 1.41
COL9A3-212ENST00000481800 CASZ1Q86V15 1759 aa23.88■■□□□ 1.41
COL9A3-212ENST00000481800 ZNF530Q6P9A1 599 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-212ENST00000481800 NPC1L1Q9UHC9 1359 aa23.88■■□□□ 1.41
COL9A3-212ENST00000481800 PTGER2P43116 358 aa23.87■■□□□ 1.41
COL9A3-212ENST00000481800 SLC16A10Q8TF71 515 aa23.86■■□□□ 1.41
COL9A3-212ENST00000481800 C1orf141Q5JVX7 400 aa23.85■■□□□ 1.41
COL9A3-212ENST00000481800 DCAF5Q96JK2 942 aa23.85■■□□□ 1.41
COL9A3-212ENST00000481800 PNPLA7Q6ZV29 1317 aa23.84■■□□□ 1.41
COL9A3-212ENST00000481800 MSH5O43196 834 aa23.84■■□□□ 1.41
COL9A3-212ENST00000481800 DIAPH1O60610 1272 aaKnown RBP23.84■■□□□ 1.41
COL9A3-212ENST00000481800 LY75O60449 1722 aa23.82■■□□□ 1.4
COL9A3-212ENST00000481800 KDRP35968 1356 aa23.82■■□□□ 1.4
COL9A3-212ENST00000481800 DCAF8L1A6NGE4 600 aa23.82■■□□□ 1.4
COL9A3-212ENST00000481800 ERVV-2B6SEH9 535 aa23.82■■□□□ 1.4
COL9A3-212ENST00000481800 ASAP1Q9ULH1 1129 aa23.81■■□□□ 1.4
COL9A3-212ENST00000481800 LOC102724428A0A0B4J2F2 783 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 HMOX1P09601 288 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 POLD1P28340 1107 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 SIK1P57059 783 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 CABP4P57796 275 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 ARXQ96QS3 562 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 SGIP1Q9BQI5 828 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 TOGARAM1Q9Y4F4 1720 aa23.8■■□□□ 1.4
COL9A3-212ENST00000481800 AK7Q96M32 723 aa23.79■■□□□ 1.4
COL9A3-212ENST00000481800 FLAD1Q8NFF5 587 aa23.78■■□□□ 1.4
COL9A3-212ENST00000481800 ATG3Q9NT62 314 aa23.78■■□□□ 1.4
COL9A3-212ENST00000481800 COL23A1Q86Y22 540 aaPredicted RBP23.77■■□□□ 1.4
COL9A3-212ENST00000481800 FHDC1Q9C0D6 1143 aaPredicted RBP23.77■■□□□ 1.4
COL9A3-212ENST00000481800 U2SURPO15042 1029 aaKnown RBP23.76■■□□□ 1.39
COL9A3-212ENST00000481800 ATP6V1AP38606 617 aa23.76■■□□□ 1.39
COL9A3-212ENST00000481800 CFAP53Q96M91 514 aa23.76■■□□□ 1.39
COL9A3-212ENST00000481800 AKAP4Q5JQC9 854 aa23.75■■□□□ 1.39
COL9A3-212ENST00000481800 SYT17Q9BSW7 474 aa23.74■■□□□ 1.39
COL9A3-212ENST00000481800 RBM42Q9BTD8 480 aaKnown RBP23.74■■□□□ 1.39
COL9A3-212ENST00000481800 KDM6AO15550 1401 aaPredicted RBP23.74■■□□□ 1.39
COL9A3-212ENST00000481800 ITGB4P16144 1822 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms