RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 PIK3C2AO00443 1686 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 SBNO2Q9Y2G9 1366 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 WASLO00401 505 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-208ENST00000481484 VPS72Q15906 364 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 KHSRPQ92945 711 aaKnown RBP eCLIP5.99□□□□□ -1.45
VPS13D-208ENST00000481484 GJD4Q96KN9 370 aaPredicted RBP5.99□□□□□ -1.45
VPS13D-208ENST00000481484 PCDHGA4Q9Y5G9 962 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 SLIT3O75094 1523 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 DISP2A7MBM2 1401 aa5.99□□□□□ -1.45
VPS13D-208ENST00000481484 RREB1Q92766 1687 aa5.98□□□□□ -1.45
VPS13D-208ENST00000481484 FAM208AQ9UK61 1670 aaKnown RBP5.98□□□□□ -1.45
VPS13D-208ENST00000481484 CPDO75976 1380 aa5.98□□□□□ -1.45
VPS13D-208ENST00000481484 XPCQ01831 940 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-208ENST00000481484 TRAK1Q9UPV9 953 aa5.98□□□□□ -1.45
VPS13D-208ENST00000481484 MINK1Q8N4C8 1332 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-208ENST00000481484 PRR36Q9H6K5 1346 aa5.98□□□□□ -1.45
VPS13D-208ENST00000481484 CENPJQ9HC77 1338 aaPredicted RBP5.98□□□□□ -1.45
VPS13D-208ENST00000481484 NUTM2FA1L443 756 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 SAFB2Q14151 953 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS13D-208ENST00000481484 VARS2Q5ST30 1063 aaKnown RBP5.97□□□□□ -1.45
VPS13D-208ENST00000481484 ZNF687Q8N1G0 1237 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 NGDNQ8NEJ9 315 aaKnown RBP5.97□□□□□ -1.45
VPS13D-208ENST00000481484 KRTAP3-3Q9BYR6 98 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 KRTAP3-2Q9BYR7 98 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 PLSCR2Q9NRY7 297 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 PPIP5K1Q6PFW1 1433 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 USP19O94966 1318 aa5.97□□□□□ -1.45
VPS13D-208ENST00000481484 LRRC37A3O60309 1634 aa5.96□□□□□ -1.45
VPS13D-208ENST00000481484 PARD3Q8TEW0 1356 aa5.96□□□□□ -1.45
VPS13D-208ENST00000481484 ZNF316A6NFI3 1004 aaPredicted RBP5.96□□□□□ -1.46
VPS13D-208ENST00000481484 NUDT7P0C024 238 aa5.96□□□□□ -1.46
VPS13D-208ENST00000481484 SPRYD3Q8NCJ5 442 aa5.96□□□□□ -1.46
VPS13D-208ENST00000481484 USP6P35125 1406 aa5.96□□□□□ -1.46
VPS13D-208ENST00000481484 LTN1O94822 1766 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 ROCK2O75116 1388 aaKnown RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 PLEKHG3A1L390 1219 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 SF3B2Q13435 895 aaKnown RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 MFSD10Q14728 455 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 NUP188Q5SRE5 1749 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 PPP1R15BQ5SWA1 713 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 LMOD2Q6P5Q4 547 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 SSH2Q76I76 1423 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 PMFBP1Q8TBY8 1022 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 NUDT16Q96DE0 195 aaKnown RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 LARP6Q9BRS8 491 aaKnown RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 HIRIP3Q9BW71 556 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 PRDM11Q9NQV5 511 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-208ENST00000481484 KDM2AQ9Y2K7 1162 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 SBF2Q86WG5 1849 aa5.95□□□□□ -1.46
VPS13D-208ENST00000481484 KIAA0232Q92628 1395 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 NINLQ9Y2I6 1382 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 COL18A1P39060 1754 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 C11orf95C9JLR9 678 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-208ENST00000481484 TBC1D12O60347 775 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 ONECUT3O60422 494 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-208ENST00000481484 OXER1Q8TDS5 423 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 LHX6Q9UPM6 363 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 COL5A2P05997 1499 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-208ENST00000481484 SPATA31A5Q5VU36 1347 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 EVC2Q86UK5 1308 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 SPATA31A7Q8IWB4 1347 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 NFAT5O94916 1531 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 PEAK1Q9H792 1746 aa5.94□□□□□ -1.46
VPS13D-208ENST00000481484 CPSF1Q10570 1443 aaKnown RBP5.93□□□□□ -1.46
VPS13D-208ENST00000481484 KRT27Q7Z3Y8 459 aa5.93□□□□□ -1.46
VPS13D-208ENST00000481484 SPNS2Q8IVW8 549 aa5.93□□□□□ -1.46
VPS13D-208ENST00000481484 SEPT12Q8IYM1 358 aa5.93□□□□□ -1.46
VPS13D-208ENST00000481484 DDX27Q96GQ7 796 aaKnown RBP5.93□□□□□ -1.46
VPS13D-208ENST00000481484 CCDC9Q9Y3X0 531 aaKnown RBP5.93□□□□□ -1.46
VPS13D-208ENST00000481484 ACEP12821 1306 aa5.93□□□□□ -1.46
VPS13D-208ENST00000481484 OVOS2A0A0G2JMS6 1433 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 OVOS2A0A0J9YW53 1432 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 CRB1P82279 1406 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 OVOS2Q6IE36 1432 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 CAMTA1Q9Y6Y1 1673 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 A0A0G2JS52 829 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 BAG6P46379 1132 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 SRPK2P78362 688 aaKnown RBP5.92□□□□□ -1.46
VPS13D-208ENST00000481484 MYT1Q01538 1121 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 CABLES1Q8TDN4 633 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 CDK19Q9BWU1 502 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 BTG4Q9NY30 223 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 RGPD5Q99666 1765 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 SPATA31A1Q5TZJ5 1347 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 TTC21AQ8NDW8 1320 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 KIF20BQ96Q89 1820 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 AATKQ6ZMQ8 1374 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 TONSLQ96HA7 1378 aa5.92□□□□□ -1.46
VPS13D-208ENST00000481484 NHSQ6T4R5 1651 aa5.91□□□□□ -1.46
VPS13D-208ENST00000481484 FAM83GA6ND36 823 aa5.91□□□□□ -1.46
VPS13D-208ENST00000481484 BARGINQ6ZT62 677 aa5.91□□□□□ -1.46
VPS13D-208ENST00000481484 PAXIP1Q6ZW49 1069 aaPredicted RBP5.91□□□□□ -1.46
VPS13D-208ENST00000481484 NLRP13Q86W25 1043 aa5.91□□□□□ -1.46
VPS13D-208ENST00000481484 THRAP3Q9Y2W1 955 aaKnown RBP5.91□□□□□ -1.46
VPS13D-208ENST00000481484 BCL9O00512 1426 aa5.91□□□□□ -1.46
VPS13D-208ENST00000481484 EDC4Q6P2E9 1401 aaKnown RBP5.91□□□□□ -1.46
VPS13D-208ENST00000481484 PSDA5PKW4 1024 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-208ENST00000481484 SLC24A1O60721 1099 aa5.9□□□□□ -1.46
VPS13D-208ENST00000481484 FAM98CQ17RN3 349 aaKnown RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms