RNA–Protein interactions for RNA: ENST00000478169.5

CCM2-210, Transcript of CCM2 scaffold protein, humanhuman

TSL 4

Gene CCM2, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-210ENST00000478169 MAP3K19Q56UN5 1328 aa13.62□□□□□ -0.23
CCM2-210ENST00000478169 PNPLA7Q6ZV29 1317 aa13.62□□□□□ -0.23
CCM2-210ENST00000478169 AMPHP49418 695 aa13.61□□□□□ -0.23
CCM2-210ENST00000478169 PRIM1P49642 420 aaKnown RBP13.61□□□□□ -0.23
CCM2-210ENST00000478169 GPR162Q16538 588 aa13.61□□□□□ -0.23
CCM2-210ENST00000478169 ZCRB1Q8TBF4 217 aaKnown RBP13.61□□□□□ -0.23
CCM2-210ENST00000478169 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
CCM2-210ENST00000478169 TESK2Q96S53 571 aa13.61□□□□□ -0.23
CCM2-210ENST00000478169 TFCP2L1Q9NZI6 479 aa13.61□□□□□ -0.23
CCM2-210ENST00000478169 ST20-MTHFSA0A0A6YYL1 179 aa13.59□□□□□ -0.23
CCM2-210ENST00000478169 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
CCM2-210ENST00000478169 RTL1A6NKG5 1358 aa13.58□□□□□ -0.23
CCM2-210ENST00000478169 NSD2O96028 1365 aa13.58□□□□□ -0.23
CCM2-210ENST00000478169 HMGB2P26583 209 aaKnown RBP13.58□□□□□ -0.24
CCM2-210ENST00000478169 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
CCM2-210ENST00000478169 FBLN1P23142 703 aa13.57□□□□□ -0.24
CCM2-210ENST00000478169 KCNQ4P56696 695 aa13.57□□□□□ -0.24
CCM2-210ENST00000478169 C1QTNF8P60827 252 aa13.57□□□□□ -0.24
CCM2-210ENST00000478169 KLHL34Q8N239 644 aa13.57□□□□□ -0.24
CCM2-210ENST00000478169 CCNL1Q9UK58 526 aaPredicted RBP13.57□□□□□ -0.24
CCM2-210ENST00000478169 MEGF6O75095 1541 aa13.57□□□□□ -0.24
CCM2-210ENST00000478169 NBPF6Q5VWK0 638 aa13.56□□□□□ -0.24
CCM2-210ENST00000478169 NBPF4Q96M43 638 aa13.56□□□□□ -0.24
CCM2-210ENST00000478169 USP47Q96K76 1375 aa13.56□□□□□ -0.24
CCM2-210ENST00000478169 TAF1LQ8IZX4 1826 aa13.55□□□□□ -0.24
CCM2-210ENST00000478169 SMG6Q86US8 1419 aaKnown RBP13.55□□□□□ -0.24
CCM2-210ENST00000478169 SENP3-EIF4A1A0A087X0R7 540 aa13.54□□□□□ -0.24
CCM2-210ENST00000478169 FYB1O15117 783 aa13.54□□□□□ -0.24
CCM2-210ENST00000478169 RRS1Q15050 365 aaKnown RBP13.54□□□□□ -0.24
CCM2-210ENST00000478169 RAPGEF4Q8WZA2 1011 aa13.54□□□□□ -0.24
CCM2-210ENST00000478169 C5P01031 1676 aa13.53□□□□□ -0.24
CCM2-210ENST00000478169 KIF20BQ96Q89 1820 aa13.53□□□□□ -0.24
CCM2-210ENST00000478169 GRIN3BO60391 1043 aa13.53□□□□□ -0.24
CCM2-210ENST00000478169 TATP17735 454 aaPredicted RBP13.53□□□□□ -0.24
CCM2-210ENST00000478169 COL23A1Q86Y22 540 aaPredicted RBP13.53□□□□□ -0.24
CCM2-210ENST00000478169 PELP1Q8IZL8 1130 aaKnown RBP13.53□□□□□ -0.24
CCM2-210ENST00000478169 NLGN2Q8NFZ4 835 aa13.53□□□□□ -0.24
CCM2-210ENST00000478169 ITGB4P16144 1822 aa13.53□□□□□ -0.24
CCM2-210ENST00000478169 TMF1P82094 1093 aa13.52□□□□□ -0.25
CCM2-210ENST00000478169 GGNBP2Q9H3C7 697 aa13.52□□□□□ -0.25
CCM2-210ENST00000478169 KIF24Q5T7B8 1368 aa13.52□□□□□ -0.25
CCM2-210ENST00000478169 INSRP06213 1382 aa13.51□□□□□ -0.25
CCM2-210ENST00000478169 PCDH11XQ9BZA7 1347 aa13.51□□□□□ -0.25
CCM2-210ENST00000478169 PCDH11YQ9BZA8 1340 aa13.51□□□□□ -0.25
CCM2-210ENST00000478169 GIGYF1O75420 1035 aaPredicted RBP13.51□□□□□ -0.25
CCM2-210ENST00000478169 USHBP1Q8N6Y0 703 aa13.51□□□□□ -0.25
CCM2-210ENST00000478169 FLAD1Q8NFF5 587 aa13.51□□□□□ -0.25
CCM2-210ENST00000478169 GOLGB1Q14789 3259 aaKnown RBP13.5□□□□□ -0.25
CCM2-210ENST00000478169 FLT4P35916 1363 aa13.5□□□□□ -0.25
CCM2-210ENST00000478169 CDCA8Q53HL2 280 aa13.5□□□□□ -0.25
CCM2-210ENST00000478169 YBX3P16989 372 aaKnown RBP eCLIP13.49□□□□□ -0.252e-6■■□□□ 12.1
CCM2-210ENST00000478169 HSP90AB2PQ58FF8 381 aa13.49□□□□□ -0.25
CCM2-210ENST00000478169 CD2APQ9Y5K6 639 aa13.49□□□□□ -0.25
CCM2-210ENST00000478169 PALLDQ8WX93 1383 aa13.48□□□□□ -0.25
CCM2-210ENST00000478169 SMARCC1Q92922 1105 aaPredicted RBP13.48□□□□□ -0.25
CCM2-210ENST00000478169 PKD1L3Q7Z443 1732 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 UBR3Q6ZT12 1888 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 CYP27B1O15528 508 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 MSL1Q68DK7 614 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 MPRIPQ6WCQ1 1025 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 MAP2P11137 1827 aaKnown RBP13.47□□□□□ -0.25
CCM2-210ENST00000478169 C4BP0C0L5 1744 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 TOGARAM1Q9Y4F4 1720 aa13.47□□□□□ -0.25
CCM2-210ENST00000478169 NKX1-1Q15270 411 aaPredicted RBP13.45□□□□□ -0.26
CCM2-210ENST00000478169 NSD3Q9BZ95 1437 aa13.45□□□□□ -0.26
CCM2-210ENST00000478169 AK7Q96M32 723 aa13.44□□□□□ -0.26
CCM2-210ENST00000478169 NCAPD2Q15021 1401 aa13.44□□□□□ -0.26
CCM2-210ENST00000478169 ANKRD26Q9UPS8 1709 aa13.44□□□□□ -0.26
CCM2-210ENST00000478169 PIGBQ92521 554 aa13.43□□□□□ -0.26
CCM2-210ENST00000478169 CARD14Q9BXL6 1004 aa13.43□□□□□ -0.26
CCM2-210ENST00000478169 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCM2-210ENST00000478169 SPG7Q9UQ90 795 aa13.43□□□□□ -0.26
CCM2-210ENST00000478169 EMILIN1Q9Y6C2 1016 aa13.43□□□□□ -0.26
CCM2-210ENST00000478169 ATP10DQ9P241 1426 aa13.42□□□□□ -0.26
CCM2-210ENST00000478169 SSFA2P28290 1259 aa13.42□□□□□ -0.26
CCM2-210ENST00000478169 WASHC2AQ641Q2 1341 aa13.41□□□□□ -0.26
CCM2-210ENST00000478169 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.4□□□□□ -0.26
CCM2-210ENST00000478169 LOC102724428A0A0B4J2F2 783 aa13.4□□□□□ -0.26
CCM2-210ENST00000478169 PPM1GO15355 546 aaPredicted RBP13.4□□□□□ -0.26
CCM2-210ENST00000478169 SIK1P57059 783 aa13.4□□□□□ -0.26
CCM2-210ENST00000478169 AMIGO3Q86WK7 504 aa13.4□□□□□ -0.26
CCM2-210ENST00000478169 GPBP1L1Q9HC44 474 aaPredicted RBP13.4□□□□□ -0.26
CCM2-210ENST00000478169 PHF14O94880 888 aa13.39□□□□□ -0.27
CCM2-210ENST00000478169 TMOD3Q9NYL9 352 aa13.39□□□□□ -0.27
CCM2-210ENST00000478169 ADCY9O60503 1353 aa13.39□□□□□ -0.27
CCM2-210ENST00000478169 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
CCM2-210ENST00000478169 CEP350Q5VT06 3117 aa13.38□□□□□ -0.27
CCM2-210ENST00000478169 PLEKHG2Q9H7P9 1386 aa13.38□□□□□ -0.27
CCM2-210ENST00000478169 IFNL2Q8IZJ0 200 aa13.38□□□□□ -0.27
CCM2-210ENST00000478169 LINC00116Q8NCU8 138 aa13.38□□□□□ -0.27
CCM2-210ENST00000478169 EYA1Q99502 592 aa13.38□□□□□ -0.27
CCM2-210ENST00000478169 KIF13BQ9NQT8 1826 aa13.37□□□□□ -0.27
CCM2-210ENST00000478169 PHKG2P15735 406 aa13.37□□□□□ -0.27
CCM2-210ENST00000478169 ATP6V1AP38606 617 aa13.37□□□□□ -0.27
CCM2-210ENST00000478169 GNPATO15228 680 aa13.36□□□□□ -0.27
CCM2-210ENST00000478169 SMIM5Q71RC9 77 aa13.36□□□□□ -0.27
CCM2-210ENST00000478169 POLKQ9UBT6 870 aa13.36□□□□□ -0.27
CCM2-210ENST00000478169 ASAP1Q9ULH1 1129 aa13.36□□□□□ -0.27
CCM2-210ENST00000478169 ZNF831Q5JPB2 1677 aa13.36□□□□□ -0.27
CCM2-210ENST00000478169 ITPK1Q13572 414 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms