RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 PRKRIP1Q9H875 184 aaPredicted RBP17.62■□□□□ 0.41
TOP3A-205ENST00000477508 MYBBP1AQ9BQG0 1328 aaKnown RBP17.62■□□□□ 0.41
TOP3A-205ENST00000477508 OVOS2A0A0G2JMS6 1433 aa17.62■□□□□ 0.41
TOP3A-205ENST00000477508 CCDC125Q86Z20 511 aa17.61■□□□□ 0.41
TOP3A-205ENST00000477508 ZCRB1Q8TBF4 217 aaKnown RBP17.61■□□□□ 0.41
TOP3A-205ENST00000477508 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.61■□□□□ 0.41
TOP3A-205ENST00000477508 COL3A1P02461 1466 aaPredicted RBP17.6■□□□□ 0.41
TOP3A-205ENST00000477508 MEGF6O75095 1541 aa17.6■□□□□ 0.41
TOP3A-205ENST00000477508 KDRP35968 1356 aa17.59■□□□□ 0.41
TOP3A-205ENST00000477508 SULT6B1Q6IMI4 303 aa17.59■□□□□ 0.41
TOP3A-205ENST00000477508 SPG7Q9UQ90 795 aa17.59■□□□□ 0.41
TOP3A-205ENST00000477508 RGPD1P0DJD0 1748 aa17.58■□□□□ 0.41
TOP3A-205ENST00000477508 BCL9O00512 1426 aa17.58■□□□□ 0.41
TOP3A-205ENST00000477508 EP400Q96L91 3159 aa17.58■□□□□ 0.4
TOP3A-205ENST00000477508 MARCH10Q8NA82 808 aaPredicted RBP17.58■□□□□ 0.4
TOP3A-205ENST00000477508 U2SURPO15042 1029 aaKnown RBP17.57■□□□□ 0.4
TOP3A-205ENST00000477508 ANP32CO43423 234 aa17.57■□□□□ 0.4
TOP3A-205ENST00000477508 MAPK8IP2Q13387 824 aaPredicted RBP17.57■□□□□ 0.4
TOP3A-205ENST00000477508 AMOTQ4VCS5 1084 aa17.57■□□□□ 0.4
TOP3A-205ENST00000477508 UPF1Q92900 1129 aaKnown RBP eCLIP17.57■□□□□ 0.4
TOP3A-205ENST00000477508 PCDH11XQ9BZA7 1347 aa17.56■□□□□ 0.4
TOP3A-205ENST00000477508 PCDH11YQ9BZA8 1340 aa17.56■□□□□ 0.4
TOP3A-205ENST00000477508 DDX54Q8TDD1 881 aaKnown RBP17.56■□□□□ 0.4
TOP3A-205ENST00000477508 SF3B2Q13435 895 aaKnown RBP17.55■□□□□ 0.4
TOP3A-205ENST00000477508 PLEKHO1Q53GL0 409 aaPredicted RBP17.55■□□□□ 0.4
TOP3A-205ENST00000477508 FAM182BQ5T319 152 aa17.55■□□□□ 0.4
TOP3A-205ENST00000477508 AEBP1Q8IUX7 1158 aa17.54■□□□□ 0.4
TOP3A-205ENST00000477508 PKD1L3Q7Z443 1732 aa17.53■□□□□ 0.4
TOP3A-205ENST00000477508 HMOX1P09601 288 aa17.53■□□□□ 0.4
TOP3A-205ENST00000477508 U2AF1L5P0DN76 240 aaPredicted RBP17.53■□□□□ 0.4
TOP3A-205ENST00000477508 U2AF1Q01081 240 aaKnown RBP eCLIP17.53■□□□□ 0.4
TOP3A-205ENST00000477508 FCHSD2O94868 740 aa17.51■□□□□ 0.39
TOP3A-205ENST00000477508 IFNL2Q8IZJ0 200 aa17.51■□□□□ 0.39
TOP3A-205ENST00000477508 PNNQ9H307 717 aaKnown RBP17.51■□□□□ 0.39
TOP3A-205ENST00000477508 CYP27B1O15528 508 aa17.5■□□□□ 0.39
TOP3A-205ENST00000477508 TRIM37O94972 964 aa17.5■□□□□ 0.39
TOP3A-205ENST00000477508 HSP90AB1P08238 724 aaKnown RBP17.5■□□□□ 0.39
TOP3A-205ENST00000477508 BCL11BQ9C0K0 894 aaPredicted RBP17.5■□□□□ 0.39
TOP3A-205ENST00000477508 SHANK3Q9BYB0 1731 aa17.5■□□□□ 0.39
TOP3A-205ENST00000477508 NKX1-1Q15270 411 aaPredicted RBP17.49■□□□□ 0.39
TOP3A-205ENST00000477508 KAT6BQ8WYB5 2073 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 NEFMP07197 916 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 PHKG2P15735 406 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 C1orf141Q5JVX7 400 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 ZNF530Q6P9A1 599 aaPredicted RBP17.48■□□□□ 0.39
TOP3A-205ENST00000477508 RSPH6AQ9H0K4 717 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 SBF2Q86WG5 1849 aa17.48■□□□□ 0.39
TOP3A-205ENST00000477508 BAG6P46379 1132 aa17.47■□□□□ 0.39
TOP3A-205ENST00000477508 PRKAR2BP31323 418 aa17.46■□□□□ 0.39
TOP3A-205ENST00000477508 WDR43Q15061 677 aaKnown RBP eCLIP17.46■□□□□ 0.39
TOP3A-205ENST00000477508 GAS2L2Q8NHY3 880 aa17.46■□□□□ 0.39
TOP3A-205ENST00000477508 APBA3O96018 575 aa17.45■□□□□ 0.38
TOP3A-205ENST00000477508 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
TOP3A-205ENST00000477508 ACSBG1Q96GR2 724 aa17.44■□□□□ 0.38
TOP3A-205ENST00000477508 DCAF5Q96JK2 942 aa17.44■□□□□ 0.38
TOP3A-205ENST00000477508 NHSQ6T4R5 1651 aa17.44■□□□□ 0.38
TOP3A-205ENST00000477508 PRIM1P49642 420 aaKnown RBP17.43■□□□□ 0.38
TOP3A-205ENST00000477508 MTHFSDQ2M296 383 aaKnown RBP17.43■□□□□ 0.38
TOP3A-205ENST00000477508 TNS1Q9HBL0 1735 aaKnown RBP17.43■□□□□ 0.38
TOP3A-205ENST00000477508 ERVV-2B6SEH9 535 aa17.42■□□□□ 0.38
TOP3A-205ENST00000477508 PLSCR1O15162 318 aa17.42■□□□□ 0.38
TOP3A-205ENST00000477508 KCNQ2O43526 872 aa17.42■□□□□ 0.38
TOP3A-205ENST00000477508 SYTL4Q96C24 671 aaPredicted RBP17.42■□□□□ 0.38
TOP3A-205ENST00000477508 RNF216Q9NWF9 866 aaPredicted RBP17.42■□□□□ 0.38
TOP3A-205ENST00000477508 PHACTR3Q96KR7 559 aa17.4■□□□□ 0.38
TOP3A-205ENST00000477508 DOT1LQ8TEK3 1739 aa17.4■□□□□ 0.38
TOP3A-205ENST00000477508 MAPK8IP3Q9UPT6 1336 aa17.4■□□□□ 0.38
TOP3A-205ENST00000477508 GNAT3A8MTJ3 354 aa17.39■□□□□ 0.37
TOP3A-205ENST00000477508 DEFB132Q7Z7B7 95 aa17.39■□□□□ 0.37
TOP3A-205ENST00000477508 PLEKHF1Q96S99 279 aa17.39■□□□□ 0.37
TOP3A-205ENST00000477508 MRS2Q9HD23 443 aa17.39■□□□□ 0.37
TOP3A-205ENST00000477508 TMOD3Q9NYL9 352 aa17.39■□□□□ 0.37
TOP3A-205ENST00000477508 EN1Q05925 392 aaPredicted RBP17.38■□□□□ 0.37
TOP3A-205ENST00000477508 DIEXFQ68CQ4 756 aaKnown RBP17.38■□□□□ 0.37
TOP3A-205ENST00000477508 MPRIPQ6WCQ1 1025 aa17.38■□□□□ 0.37
TOP3A-205ENST00000477508 PTF1AQ7RTS3 328 aa17.38■□□□□ 0.37
TOP3A-205ENST00000477508 CAMKK2Q96RR4 588 aa17.38■□□□□ 0.37
TOP3A-205ENST00000477508 MAP3K5Q99683 1374 aa17.38■□□□□ 0.37
TOP3A-205ENST00000477508 HTATSF1O43719 755 aaKnown RBP17.37■□□□□ 0.37
TOP3A-205ENST00000477508 HMGB2P26583 209 aaKnown RBP17.37■□□□□ 0.37
TOP3A-205ENST00000477508 CABP4P57796 275 aa17.37■□□□□ 0.37
TOP3A-205ENST00000477508 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
TOP3A-205ENST00000477508 RGPD3A6NKT7 1758 aaPredicted RBP17.37■□□□□ 0.37
TOP3A-205ENST00000477508 RGPD4Q7Z3J3 1758 aa17.37■□□□□ 0.37
TOP3A-205ENST00000477508 BTAF1O14981 1849 aa17.37■□□□□ 0.37
TOP3A-205ENST00000477508 RTF1Q92541 710 aaKnown RBP17.36■□□□□ 0.37
TOP3A-205ENST00000477508 SMARCC1Q92922 1105 aaPredicted RBP17.36■□□□□ 0.37
TOP3A-205ENST00000477508 KDM6AO15550 1401 aaPredicted RBP17.36■□□□□ 0.37
TOP3A-205ENST00000477508 ITGB4P16144 1822 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 RNMTO43148 476 aaKnown RBP17.35■□□□□ 0.37
TOP3A-205ENST00000477508 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 PNISRQ8TF01 805 aaKnown RBP17.35■□□□□ 0.37
TOP3A-205ENST00000477508 PIGBQ92521 554 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 RUNDC1Q96C34 613 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 TOGARAM1Q9Y4F4 1720 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 SCN11AQ9UI33 1791 aa17.35■□□□□ 0.37
TOP3A-205ENST00000477508 EZH2Q15910 746 aaKnown RBP17.34■□□□□ 0.37
TOP3A-205ENST00000477508 CCDC184Q52MB2 194 aa17.34■□□□□ 0.37
TOP3A-205ENST00000477508 SLC27A3Q5K4L6 730 aa17.33■□□□□ 0.36
TOP3A-205ENST00000477508 SLC52A2Q9HAB3 445 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms