RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 NSD2O96028 1365 aa16.53■□□□□ 0.24
SYNE1-223ENST00000476519 RREB1Q92766 1687 aa16.53■□□□□ 0.24
SYNE1-223ENST00000476519 SYTL4Q96C24 671 aaPredicted RBP16.53■□□□□ 0.24
SYNE1-223ENST00000476519 MEGF6O75095 1541 aa16.53■□□□□ 0.24
SYNE1-223ENST00000476519 MYOM1P52179 1685 aa16.53■□□□□ 0.24
SYNE1-223ENST00000476519 LRP5O75197 1615 aa16.52■□□□□ 0.24
SYNE1-223ENST00000476519 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.24
SYNE1-223ENST00000476519 EYA1Q99502 592 aa16.52■□□□□ 0.24
SYNE1-223ENST00000476519 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.52■□□□□ 0.24
SYNE1-223ENST00000476519 RGPD3A6NKT7 1758 aaPredicted RBP16.51■□□□□ 0.23
SYNE1-223ENST00000476519 RGPD4Q7Z3J3 1758 aa16.51■□□□□ 0.23
SYNE1-223ENST00000476519 PCDH11XQ9BZA7 1347 aa16.51■□□□□ 0.23
SYNE1-223ENST00000476519 PCDH11YQ9BZA8 1340 aa16.51■□□□□ 0.23
SYNE1-223ENST00000476519 MORC1Q86VD1 984 aa16.51■□□□□ 0.23
SYNE1-223ENST00000476519 HMGB2P26583 209 aaKnown RBP16.5■□□□□ 0.23
SYNE1-223ENST00000476519 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
SYNE1-223ENST00000476519 NUP188Q5SRE5 1749 aa16.5■□□□□ 0.23
SYNE1-223ENST00000476519 KIF7Q2M1P5 1343 aa16.49■□□□□ 0.23
SYNE1-223ENST00000476519 LRRC4BQ9NT99 713 aa16.49■□□□□ 0.23
SYNE1-223ENST00000476519 KIF20BQ96Q89 1820 aa16.49■□□□□ 0.23
SYNE1-223ENST00000476519 CYP27B1O15528 508 aa16.48■□□□□ 0.23
SYNE1-223ENST00000476519 EIF4A2Q14240 407 aaKnown RBP16.48■□□□□ 0.23
SYNE1-223ENST00000476519 NKX1-1Q15270 411 aaPredicted RBP16.48■□□□□ 0.23
SYNE1-223ENST00000476519 NHSQ6T4R5 1651 aa16.48■□□□□ 0.23
SYNE1-223ENST00000476519 NCAPD2Q15021 1401 aa16.47■□□□□ 0.23
SYNE1-223ENST00000476519 AMER1Q5JTC6 1135 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-223ENST00000476519 PDGFDQ9GZP0 370 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-223ENST00000476519 PPP1R1BQ9UD71 204 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-223ENST00000476519 PER1O15534 1290 aaPredicted RBP16.45■□□□□ 0.22
SYNE1-223ENST00000476519 ZBTB7AO95365 584 aa16.45■□□□□ 0.22
SYNE1-223ENST00000476519 AKT1S1Q96B36 256 aa16.45■□□□□ 0.22
SYNE1-223ENST00000476519 MTFR1LQ9H019 292 aa16.45■□□□□ 0.22
SYNE1-223ENST00000476519 KAT6BQ8WYB5 2073 aa16.44■□□□□ 0.22
SYNE1-223ENST00000476519 PLEKHG2Q9H7P9 1386 aa16.44■□□□□ 0.22
SYNE1-223ENST00000476519 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
SYNE1-223ENST00000476519 ZNF827Q17R98 1081 aa16.43■□□□□ 0.22
SYNE1-223ENST00000476519 IFNL2Q8IZJ0 200 aa16.43■□□□□ 0.22
SYNE1-223ENST00000476519 SLC16A10Q8TF71 515 aa16.43■□□□□ 0.22
SYNE1-223ENST00000476519 CCNL1Q9UK58 526 aaPredicted RBP16.43■□□□□ 0.22
SYNE1-223ENST00000476519 IGSF1Q8N6C5 1336 aa16.43■□□□□ 0.22
SYNE1-223ENST00000476519 PTGER2P43116 358 aa16.42■□□□□ 0.22
SYNE1-223ENST00000476519 SMARCC1Q92922 1105 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-223ENST00000476519 ATF5Q9Y2D1 282 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-223ENST00000476519 RGPD2P0DJD1 1756 aa16.41■□□□□ 0.22
SYNE1-223ENST00000476519 PHKG2P15735 406 aa16.41■□□□□ 0.22
SYNE1-223ENST00000476519 PLEKHO1Q53GL0 409 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-223ENST00000476519 TFCP2L1Q9NZI6 479 aa16.41■□□□□ 0.22
SYNE1-223ENST00000476519 KCNQ4P56696 695 aa16.4■□□□□ 0.22
SYNE1-223ENST00000476519 AMOTQ4VCS5 1084 aa16.4■□□□□ 0.22
SYNE1-223ENST00000476519 PIGBQ92521 554 aa16.4■□□□□ 0.22
SYNE1-223ENST00000476519 BTAF1O14981 1849 aa16.4■□□□□ 0.22
SYNE1-223ENST00000476519 HSP90AB1P08238 724 aaKnown RBP16.39■□□□□ 0.21
SYNE1-223ENST00000476519 IL13P35225 146 aa16.39■□□□□ 0.21
SYNE1-223ENST00000476519 SGIP1Q9BQI5 828 aa16.39■□□□□ 0.21
SYNE1-223ENST00000476519 MAP2P11137 1827 aaKnown RBP16.39■□□□□ 0.21
SYNE1-223ENST00000476519 ANKRD26Q9UPS8 1709 aa16.39■□□□□ 0.21
SYNE1-223ENST00000476519 MTHFSP49914 203 aa16.38■□□□□ 0.21
SYNE1-223ENST00000476519 TMOD3Q9NYL9 352 aa16.38■□□□□ 0.21
SYNE1-223ENST00000476519 DCAF8L1A6NGE4 600 aa16.37■□□□□ 0.21
SYNE1-223ENST00000476519 ERVV-2B6SEH9 535 aa16.37■□□□□ 0.21
SYNE1-223ENST00000476519 PALLDQ8WX93 1383 aa16.37■□□□□ 0.21
SYNE1-223ENST00000476519 NPC1L1Q9UHC9 1359 aa16.37■□□□□ 0.21
SYNE1-223ENST00000476519 SULT6B1Q6IMI4 303 aa16.36■□□□□ 0.21
SYNE1-223ENST00000476519 DCAF5Q96JK2 942 aa16.36■□□□□ 0.21
SYNE1-223ENST00000476519 PNPLA7Q6ZV29 1317 aa16.36■□□□□ 0.21
SYNE1-223ENST00000476519 CC2D1BQ5T0F9 858 aaKnown RBP16.35■□□□□ 0.21
SYNE1-223ENST00000476519 FLAD1Q8NFF5 587 aa16.35■□□□□ 0.21
SYNE1-223ENST00000476519 ARXQ96QS3 562 aa16.35■□□□□ 0.21
SYNE1-223ENST00000476519 SHANK3Q9BYB0 1731 aa16.35■□□□□ 0.21
SYNE1-223ENST00000476519 PAPPAQ13219 1627 aa16.34■□□□□ 0.21
SYNE1-223ENST00000476519 CASZ1Q86V15 1759 aa16.34■□□□□ 0.21
SYNE1-223ENST00000476519 AEBP1Q8IUX7 1158 aa16.34■□□□□ 0.21
SYNE1-223ENST00000476519 LOC102724428A0A0B4J2F2 783 aa16.33■□□□□ 0.2
SYNE1-223ENST00000476519 POLD1P28340 1107 aa16.33■□□□□ 0.2
SYNE1-223ENST00000476519 SIK1P57059 783 aa16.33■□□□□ 0.2
SYNE1-223ENST00000476519 ZNF530Q6P9A1 599 aaPredicted RBP16.33■□□□□ 0.2
SYNE1-223ENST00000476519 SYT17Q9BSW7 474 aa16.33■□□□□ 0.2
SYNE1-223ENST00000476519 KDRP35968 1356 aa16.33■□□□□ 0.2
SYNE1-223ENST00000476519 C1orf141Q5JVX7 400 aa16.32■□□□□ 0.2
SYNE1-223ENST00000476519 COL23A1Q86Y22 540 aaPredicted RBP16.32■□□□□ 0.2
SYNE1-223ENST00000476519 DOT1LQ8TEK3 1739 aa16.32■□□□□ 0.2
SYNE1-223ENST00000476519 FHDC1Q9C0D6 1143 aaPredicted RBP16.32■□□□□ 0.2
SYNE1-223ENST00000476519 ATG3Q9NT62 314 aa16.32■□□□□ 0.2
SYNE1-223ENST00000476519 ASAP1Q9ULH1 1129 aa16.32■□□□□ 0.2
SYNE1-223ENST00000476519 PKD1L3Q7Z443 1732 aa16.31■□□□□ 0.2
SYNE1-223ENST00000476519 DIAPH1O60610 1272 aaKnown RBP16.31■□□□□ 0.2
SYNE1-223ENST00000476519 MSH5O43196 834 aa16.3■□□□□ 0.2
SYNE1-223ENST00000476519 CABP4P57796 275 aa16.3■□□□□ 0.2
SYNE1-223ENST00000476519 AK7Q96M32 723 aa16.29■□□□□ 0.2
SYNE1-223ENST00000476519 LY75O60449 1722 aa16.28■□□□□ 0.2
SYNE1-223ENST00000476519 MAP3K5Q99683 1374 aa16.28■□□□□ 0.2
SYNE1-223ENST00000476519 ATP6V1AP38606 617 aa16.28■□□□□ 0.2
SYNE1-223ENST00000476519 AKAP4Q5JQC9 854 aa16.27■□□□□ 0.2
SYNE1-223ENST00000476519 SSFA2P28290 1259 aa16.26■□□□□ 0.19
SYNE1-223ENST00000476519 NFATC2IPQ8NCF5 419 aa16.26■□□□□ 0.19
SYNE1-223ENST00000476519 LINC00116Q8NCU8 138 aa16.26■□□□□ 0.19
SYNE1-223ENST00000476519 HMOX1P09601 288 aa16.25■□□□□ 0.19
SYNE1-223ENST00000476519 ITPK1Q13572 414 aa16.25■□□□□ 0.19
SYNE1-223ENST00000476519 UTRNP46939 3433 aa16.25■□□□□ 0.19
SYNE1-223ENST00000476519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms