RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 INSRP06213 1382 aa17.12■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 CGNL1Q0VF96 1302 aa17.11■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 UTRNP46939 3433 aa17.11■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 LY75O60449 1722 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 QSER1Q2KHR3 1735 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 PRIM1P49642 420 aaKnown RBP17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 ZNF827Q17R98 1081 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 HSP90AB2PQ58FF8 381 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 SLC27A3Q5K4L6 730 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 AKT1S1Q96B36 256 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 ATF5Q9Y2D1 282 aaPredicted RBP17.1■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 DOT1LQ8TEK3 1739 aa17.09■□□□□ 0.33
MSH5-SAPCD1-205ENST00000476085 COL24A1Q17RW2 1714 aa17.08■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 FLT4P35916 1363 aa17.08■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 NCAPD2Q15021 1401 aa17.07■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 ANKRD26Q9UPS8 1709 aa17.07■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 NSD3Q9BZ95 1437 aa17.06■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 MAP2P11137 1827 aaKnown RBP17.06■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 USHBP1Q8N6Y0 703 aa17.06■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 TUBGCP6Q96RT7 1819 aa17.05■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 EMILIN1Q9Y6C2 1016 aa17.05■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 SLC16A10Q8TF71 515 aa17.04■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 SMG6Q86US8 1419 aaKnown RBP17.04■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 WASHC2AQ641Q2 1341 aa17.03■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 RAPGEF4Q8WZA2 1011 aa17.03■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 FHDC1Q9C0D6 1143 aaPredicted RBP17.03■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 MAP3K5Q99683 1374 aa17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 PNPLA7Q6ZV29 1317 aa17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 CYP27B1O15528 508 aa17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 TATP17735 454 aaPredicted RBP17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 KCNQ4P56696 695 aa17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 SYTL4Q96C24 671 aaPredicted RBP17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 PCGF6Q9BYE7 350 aa17.02■□□□□ 0.32
MSH5-SAPCD1-205ENST00000476085 PKD1L3Q7Z443 1732 aa17.01■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 YY1P25490 414 aa17.01■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 POLKQ9UBT6 870 aa17.01■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 PCDH11XQ9BZA7 1347 aa17■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 PCDH11YQ9BZA8 1340 aa17■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 ARXQ96QS3 562 aa17■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 ITGB4P16144 1822 aa17■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 NKX1-1Q15270 411 aaPredicted RBP16.99■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 EYA1Q99502 592 aa16.98■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 TAF1LQ8IZX4 1826 aa16.98■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 DCAF8L1A6NGE4 600 aa16.97■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 TFCP2L1Q9NZI6 479 aa16.97■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 CCNL1Q9UK58 526 aaPredicted RBP16.97■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 HSPA5P11021 654 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 EIF4G2P78344 907 aaKnown RBP eCLIP16.96■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.96■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 GOLGB1Q14789 3259 aaKnown RBP16.96■□□□□ 0.31
MSH5-SAPCD1-205ENST00000476085 CHD4Q14839 1912 aa16.96■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 C5P01031 1676 aa16.94■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 COL23A1Q86Y22 540 aaPredicted RBP16.94■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PLEKHG2Q9H7P9 1386 aa16.93■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PPM1GO15355 546 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PIGBQ92521 554 aa16.93■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PALLDQ8WX93 1383 aa16.92■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 EIF4A2Q14240 407 aaKnown RBP16.92■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 MPRIPQ6WCQ1 1025 aa16.92■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PANK3Q9H999 370 aa16.92■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 HMGB2P26583 209 aaKnown RBP16.91■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 SPG7Q9UQ90 795 aa16.91■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 POLD1P28340 1107 aa16.9■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 SMARCC1Q92922 1105 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-205ENST00000476085 PHKG2P15735 406 aa16.89■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 IGSF1Q8N6C5 1336 aa16.89■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 UBR3Q6ZT12 1888 aa16.88■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 C4BP0C0L5 1744 aa16.88■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 AMIGO3Q86WK7 504 aa16.88■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 IFNL2Q8IZJ0 200 aa16.88■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 TNNT2P45379 298 aaPredicted RBP16.87■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 FLAD1Q8NFF5 587 aa16.87■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 POLR3GLQ9BT43 218 aa16.87■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 CCER1Q8TC90 406 aaPredicted RBP16.86■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 LOC102724428A0A0B4J2F2 783 aa16.85■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 SIK1P57059 783 aa16.85■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 NLGN2Q8NFZ4 835 aa16.85■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 ASAP1Q9ULH1 1129 aa16.85■□□□□ 0.29
MSH5-SAPCD1-205ENST00000476085 LINC00116Q8NCU8 138 aa16.83■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 ATG3Q9NT62 314 aa16.83■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 TMOD3Q9NYL9 352 aa16.83■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 ZNF831Q5JPB2 1677 aa16.82■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 ERVV-2B6SEH9 535 aa16.82■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 ITPK1Q13572 414 aa16.82■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 MSH5O43196 834 aa16.81■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 GPR162Q16538 588 aa16.81■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 MSL1Q68DK7 614 aa16.81■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 SLC4A9Q96Q91 983 aa16.81■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 KDRP35968 1356 aa16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 PER1O15534 1290 aaPredicted RBP16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 SSFA2P28290 1259 aa16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 SMIM5Q71RC9 77 aa16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 MORC1Q86VD1 984 aa16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 DCAF5Q96JK2 942 aa16.8■□□□□ 0.28
MSH5-SAPCD1-205ENST00000476085 CD2APQ9Y5K6 639 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms