RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 TONSLQ96HA7 1378 aa28.87■■■□□ 2.21
VPS36-203ENST00000475375 HOXC9P31274 260 aa28.86■■■□□ 2.21
VPS36-203ENST00000475375 C1QTNF8P60827 252 aa28.86■■■□□ 2.21
VPS36-203ENST00000475375 ZCRB1Q8TBF4 217 aaKnown RBP28.86■■■□□ 2.21
VPS36-203ENST00000475375 FBLN1P23142 703 aa28.84■■■□□ 2.21
VPS36-203ENST00000475375 MSH5O43196 834 aa28.83■■■□□ 2.21
VPS36-203ENST00000475375 QSER1Q2KHR3 1735 aa28.83■■■□□ 2.21
VPS36-203ENST00000475375 CCNL1Q9UK58 526 aaPredicted RBP28.82■■■□□ 2.2
VPS36-203ENST00000475375 DOT1LQ8TEK3 1739 aa28.82■■■□□ 2.2
VPS36-203ENST00000475375 NLGN2Q8NFZ4 835 aa28.8■■■□□ 2.2
VPS36-203ENST00000475375 NSD2O96028 1365 aa28.79■■■□□ 2.2
VPS36-203ENST00000475375 MEGF6O75095 1541 aa28.79■■■□□ 2.2
VPS36-203ENST00000475375 TUBGCP6Q96RT7 1819 aa28.78■■■□□ 2.2
VPS36-203ENST00000475375 USP47Q96K76 1375 aa28.77■■■□□ 2.2
VPS36-203ENST00000475375 ST20-MTHFSA0A0A6YYL1 179 aa28.77■■■□□ 2.2
VPS36-203ENST00000475375 GIGYF1O75420 1035 aaPredicted RBP28.77■■■□□ 2.2
VPS36-203ENST00000475375 RRS1Q15050 365 aaKnown RBP28.76■■■□□ 2.19
VPS36-203ENST00000475375 USHBP1Q8N6Y0 703 aa28.76■■■□□ 2.19
VPS36-203ENST00000475375 TESK2Q96S53 571 aa28.76■■■□□ 2.19
VPS36-203ENST00000475375 RAPGEF4Q8WZA2 1011 aa28.75■■■□□ 2.19
VPS36-203ENST00000475375 RGPD2P0DJD1 1756 aa28.75■■■□□ 2.19
VPS36-203ENST00000475375 LY75O60449 1722 aa28.74■■■□□ 2.19
VPS36-203ENST00000475375 NBPF6Q5VWK0 638 aa28.74■■■□□ 2.19
VPS36-203ENST00000475375 NBPF4Q96M43 638 aa28.74■■■□□ 2.19
VPS36-203ENST00000475375 COL24A1Q17RW2 1714 aa28.74■■■□□ 2.19
VPS36-203ENST00000475375 RTL1A6NKG5 1358 aa28.74■■■□□ 2.19
VPS36-203ENST00000475375 MSL1Q68DK7 614 aa28.73■■■□□ 2.19
VPS36-203ENST00000475375 SMG6Q86US8 1419 aaKnown RBP28.73■■■□□ 2.19
VPS36-203ENST00000475375 COL23A1Q86Y22 540 aaPredicted RBP28.73■■■□□ 2.19
VPS36-203ENST00000475375 SHANK3Q9BYB0 1731 aa28.72■■■□□ 2.19
VPS36-203ENST00000475375 SLC24A1O60721 1099 aa28.72■■■□□ 2.19
VPS36-203ENST00000475375 CGNL1Q0VF96 1302 aa28.71■■■□□ 2.19
VPS36-203ENST00000475375 GGNBP2Q9H3C7 697 aa28.71■■■□□ 2.19
VPS36-203ENST00000475375 GRIN3BO60391 1043 aa28.7■■■□□ 2.18
VPS36-203ENST00000475375 YBX3P16989 372 aaKnown RBP eCLIP28.69■■■□□ 2.18
VPS36-203ENST00000475375 TATP17735 454 aaPredicted RBP28.69■■■□□ 2.18
VPS36-203ENST00000475375 FYB1O15117 783 aa28.66■■■□□ 2.18
VPS36-203ENST00000475375 PCDH11XQ9BZA7 1347 aa28.65■■■□□ 2.18
VPS36-203ENST00000475375 PCDH11YQ9BZA8 1340 aa28.65■■■□□ 2.18
VPS36-203ENST00000475375 HSP90AB2PQ58FF8 381 aa28.63■■■□□ 2.17
VPS36-203ENST00000475375 MPRIPQ6WCQ1 1025 aa28.63■■■□□ 2.17
VPS36-203ENST00000475375 PALLDQ8WX93 1383 aa28.62■■■□□ 2.17
VPS36-203ENST00000475375 HMGB2P26583 209 aaKnown RBP28.62■■■□□ 2.17
VPS36-203ENST00000475375 TMF1P82094 1093 aa28.62■■■□□ 2.17
VPS36-203ENST00000475375 FLAD1Q8NFF5 587 aa28.61■■■□□ 2.17
VPS36-203ENST00000475375 C5P01031 1676 aa28.6■■■□□ 2.17
VPS36-203ENST00000475375 INSRP06213 1382 aa28.6■■■□□ 2.17
VPS36-203ENST00000475375 AK7Q96M32 723 aa28.58■■■□□ 2.17
VPS36-203ENST00000475375 CD2APQ9Y5K6 639 aa28.58■■■□□ 2.17
VPS36-203ENST00000475375 FLT4P35916 1363 aa28.58■■■□□ 2.17
VPS36-203ENST00000475375 CEP350Q5VT06 3117 aa28.58■■■□□ 2.17
VPS36-203ENST00000475375 ATP10DQ9P241 1426 aa28.55■■■□□ 2.16
VPS36-203ENST00000475375 CYP27B1O15528 508 aa28.55■■■□□ 2.16
VPS36-203ENST00000475375 SMARCC1Q92922 1105 aaPredicted RBP28.55■■■□□ 2.16
VPS36-203ENST00000475375 PHF14O94880 888 aa28.54■■■□□ 2.16
VPS36-203ENST00000475375 KIF24Q5T7B8 1368 aa28.51■■■□□ 2.16
VPS36-203ENST00000475375 KIF20BQ96Q89 1820 aa28.51■■■□□ 2.15
VPS36-203ENST00000475375 PPM1GO15355 546 aaPredicted RBP28.51■■■□□ 2.15
VPS36-203ENST00000475375 CDCA8Q53HL2 280 aa28.51■■■□□ 2.15
VPS36-203ENST00000475375 GPBP1L1Q9HC44 474 aaPredicted RBP28.51■■■□□ 2.15
VPS36-203ENST00000475375 WWC3Q9ULE0 1092 aa28.5■■■□□ 2.15
VPS36-203ENST00000475375 EMILIN1Q9Y6C2 1016 aa28.5■■■□□ 2.15
VPS36-203ENST00000475375 TAF1LQ8IZX4 1826 aa28.5■■■□□ 2.15
VPS36-203ENST00000475375 C4BP0C0L5 1744 aa28.49■■■□□ 2.15
VPS36-203ENST00000475375 ZNF526Q8TF50 670 aaPredicted RBP28.49■■■□□ 2.15
VPS36-203ENST00000475375 PIGBQ92521 554 aa28.49■■■□□ 2.15
VPS36-203ENST00000475375 SMIM5Q71RC9 77 aa28.48■■■□□ 2.15
VPS36-203ENST00000475375 AMIGO3Q86WK7 504 aa28.48■■■□□ 2.15
VPS36-203ENST00000475375 NSD3Q9BZ95 1437 aa28.47■■■□□ 2.15
VPS36-203ENST00000475375 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.47■■■□□ 2.15
VPS36-203ENST00000475375 SPG7Q9UQ90 795 aa28.47■■■□□ 2.15
VPS36-203ENST00000475375 TOGARAM1Q9Y4F4 1720 aa28.46■■■□□ 2.15
VPS36-203ENST00000475375 ITGB4P16144 1822 aa28.45■■■□□ 2.14
VPS36-203ENST00000475375 IGSF1Q8N6C5 1336 aa28.44■■■□□ 2.14
VPS36-203ENST00000475375 CARD14Q9BXL6 1004 aa28.44■■■□□ 2.14
VPS36-203ENST00000475375 LOC102724428A0A0B4J2F2 783 aa28.43■■■□□ 2.14
VPS36-203ENST00000475375 SIK1P57059 783 aa28.43■■■□□ 2.14
VPS36-203ENST00000475375 SSFA2P28290 1259 aa28.42■■■□□ 2.14
VPS36-203ENST00000475375 TMOD3Q9NYL9 352 aa28.42■■■□□ 2.14
VPS36-203ENST00000475375 PKD1L3Q7Z443 1732 aa28.42■■■□□ 2.14
VPS36-203ENST00000475375 NKX1-1Q15270 411 aaPredicted RBP28.41■■■□□ 2.14
VPS36-203ENST00000475375 LINC00116Q8NCU8 138 aa28.41■■■□□ 2.14
VPS36-203ENST00000475375 UBR3Q6ZT12 1888 aa28.4■■■□□ 2.14
VPS36-203ENST00000475375 ADCY9O60503 1353 aa28.39■■■□□ 2.14
VPS36-203ENST00000475375 GNPATO15228 680 aa28.39■■■□□ 2.14
VPS36-203ENST00000475375 ASAP1Q9ULH1 1129 aa28.38■■■□□ 2.13
VPS36-203ENST00000475375 ATP6V1AP38606 617 aa28.37■■■□□ 2.13
VPS36-203ENST00000475375 IFFO2Q5TF58 517 aa28.37■■■□□ 2.13
VPS36-203ENST00000475375 EYA1Q99502 592 aa28.37■■■□□ 2.13
VPS36-203ENST00000475375 NCAPD2Q15021 1401 aa28.36■■■□□ 2.13
VPS36-203ENST00000475375 WASHC2AQ641Q2 1341 aa28.36■■■□□ 2.13
VPS36-203ENST00000475375 ITPK1Q13572 414 aa28.34■■■□□ 2.13
VPS36-203ENST00000475375 IFNL2Q8IZJ0 200 aa28.34■■■□□ 2.13
VPS36-203ENST00000475375 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.34■■■□□ 2.131e-7■■□□□ 13.7
VPS36-203ENST00000475375 PHKG2P15735 406 aa28.33■■■□□ 2.13
VPS36-203ENST00000475375 HSPA6P17066 643 aa28.33■■■□□ 2.13
VPS36-203ENST00000475375 MAP2P11137 1827 aaKnown RBP28.32■■■□□ 2.12
VPS36-203ENST00000475375 MMP10P09238 476 aa28.31■■■□□ 2.12
VPS36-203ENST00000475375 TNNT2P45379 298 aaPredicted RBP28.29■■■□□ 2.12
VPS36-203ENST00000475375 ATG3Q9NT62 314 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms