RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ANKRD36BQ8N2N9 1353 aa17.83■□□□□ 0.45
SKA3-206ENST00000475251 SYTL4Q96C24 671 aaPredicted RBP17.83■□□□□ 0.44
SKA3-206ENST00000475251 COL24A1Q17RW2 1714 aa17.83■□□□□ 0.44
SKA3-206ENST00000475251 PNPLA7Q6ZV29 1317 aa17.82■□□□□ 0.44
SKA3-206ENST00000475251 HMGB2P26583 209 aaKnown RBP17.82■□□□□ 0.44
SKA3-206ENST00000475251 GIGYF1O75420 1035 aaPredicted RBP17.81■□□□□ 0.44
SKA3-206ENST00000475251 NCBP3Q53F19 620 aaKnown RBP17.81■□□□□ 0.44
SKA3-206ENST00000475251 PELP1Q8IZL8 1130 aaKnown RBP17.81■□□□□ 0.44
SKA3-206ENST00000475251 LTV1Q96GA3 475 aaPredicted RBP17.81■□□□□ 0.44
SKA3-206ENST00000475251 SLC24A1O60721 1099 aa17.8■□□□□ 0.44
SKA3-206ENST00000475251 COG3Q96JB2 828 aa17.8■□□□□ 0.44
SKA3-206ENST00000475251 LY75O60449 1722 aa17.79■□□□□ 0.44
SKA3-206ENST00000475251 DOT1LQ8TEK3 1739 aa17.79■□□□□ 0.44
SKA3-206ENST00000475251 AMPHP49418 695 aa17.79■□□□□ 0.44
SKA3-206ENST00000475251 PRIM1P49642 420 aaKnown RBP17.79■□□□□ 0.44
SKA3-206ENST00000475251 GRIN3BO60391 1043 aa17.78■□□□□ 0.44
SKA3-206ENST00000475251 ZCRB1Q8TBF4 217 aaKnown RBP17.78■□□□□ 0.44
SKA3-206ENST00000475251 CCNL1Q9UK58 526 aaPredicted RBP17.78■□□□□ 0.44
SKA3-206ENST00000475251 HOXC9P31274 260 aa17.77■□□□□ 0.44
SKA3-206ENST00000475251 USP47Q96K76 1375 aa17.77■□□□□ 0.43
SKA3-206ENST00000475251 TUBGCP6Q96RT7 1819 aa17.77■□□□□ 0.43
SKA3-206ENST00000475251 CGNL1Q0VF96 1302 aa17.76■□□□□ 0.43
SKA3-206ENST00000475251 MAP3K19Q56UN5 1328 aa17.76■□□□□ 0.43
SKA3-206ENST00000475251 RTL1A6NKG5 1358 aa17.76■□□□□ 0.43
SKA3-206ENST00000475251 NSD2O96028 1365 aa17.75■□□□□ 0.43
SKA3-206ENST00000475251 SMG6Q86US8 1419 aaKnown RBP17.74■□□□□ 0.43
SKA3-206ENST00000475251 KCNQ4P56696 695 aa17.74■□□□□ 0.43
SKA3-206ENST00000475251 NLGN2Q8NFZ4 835 aa17.74■□□□□ 0.43
SKA3-206ENST00000475251 TONSLQ96HA7 1378 aa17.74■□□□□ 0.43
SKA3-206ENST00000475251 MEGF6O75095 1541 aa17.73■□□□□ 0.43
SKA3-206ENST00000475251 SHANK3Q9BYB0 1731 aa17.73■□□□□ 0.43
SKA3-206ENST00000475251 NPM3O75607 178 aaKnown RBP17.73■□□□□ 0.43
SKA3-206ENST00000475251 FLAD1Q8NFF5 587 aa17.72■□□□□ 0.43
SKA3-206ENST00000475251 RAPGEF4Q8WZA2 1011 aa17.72■□□□□ 0.43
SKA3-206ENST00000475251 COL23A1Q86Y22 540 aaPredicted RBP17.7■□□□□ 0.42
SKA3-206ENST00000475251 RGPD2P0DJD1 1756 aa17.7■□□□□ 0.42
SKA3-206ENST00000475251 TATP17735 454 aaPredicted RBP17.69■□□□□ 0.42
SKA3-206ENST00000475251 CD2APQ9Y5K6 639 aa17.69■□□□□ 0.42
SKA3-206ENST00000475251 PCDH11XQ9BZA7 1347 aa17.69■□□□□ 0.42
SKA3-206ENST00000475251 PCDH11YQ9BZA8 1340 aa17.69■□□□□ 0.42
SKA3-206ENST00000475251 C5P01031 1676 aa17.68■□□□□ 0.42
SKA3-206ENST00000475251 YBX3P16989 372 aaKnown RBP eCLIP17.68■□□□□ 0.42
SKA3-206ENST00000475251 NBPF6Q5VWK0 638 aa17.68■□□□□ 0.42
SKA3-206ENST00000475251 NBPF4Q96M43 638 aa17.68■□□□□ 0.42
SKA3-206ENST00000475251 TESK2Q96S53 571 aa17.68■□□□□ 0.42
SKA3-206ENST00000475251 ST20-MTHFSA0A0A6YYL1 179 aa17.67■□□□□ 0.42
SKA3-206ENST00000475251 GOLGB1Q14789 3259 aaKnown RBP17.66■□□□□ 0.42
SKA3-206ENST00000475251 KCNA4P22459 653 aa17.66■□□□□ 0.42
SKA3-206ENST00000475251 RRS1Q15050 365 aaKnown RBP17.66■□□□□ 0.42
SKA3-206ENST00000475251 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
SKA3-206ENST00000475251 NSD3Q9BZ95 1437 aa17.65■□□□□ 0.42
SKA3-206ENST00000475251 FBLN1P23142 703 aa17.65■□□□□ 0.42
SKA3-206ENST00000475251 MSL1Q68DK7 614 aa17.65■□□□□ 0.42
SKA3-206ENST00000475251 PALLDQ8WX93 1383 aa17.65■□□□□ 0.42
SKA3-206ENST00000475251 SMARCC1Q92922 1105 aaPredicted RBP17.64■□□□□ 0.41
SKA3-206ENST00000475251 INSRP06213 1382 aa17.64■□□□□ 0.41
SKA3-206ENST00000475251 ATP10DQ9P241 1426 aa17.64■□□□□ 0.41
SKA3-206ENST00000475251 FYB1O15117 783 aa17.63■□□□□ 0.41
SKA3-206ENST00000475251 USHBP1Q8N6Y0 703 aa17.63■□□□□ 0.41
SKA3-206ENST00000475251 AK7Q96M32 723 aa17.63■□□□□ 0.41
SKA3-206ENST00000475251 GPBP1L1Q9HC44 474 aaPredicted RBP17.63■□□□□ 0.41
SKA3-206ENST00000475251 FLT4P35916 1363 aa17.63■□□□□ 0.41
SKA3-206ENST00000475251 TMF1P82094 1093 aa17.62■□□□□ 0.41
SKA3-206ENST00000475251 IFFO2Q5TF58 517 aa17.62■□□□□ 0.41
SKA3-206ENST00000475251 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
SKA3-206ENST00000475251 GGNBP2Q9H3C7 697 aa17.62■□□□□ 0.41
SKA3-206ENST00000475251 TAF1LQ8IZX4 1826 aa17.62■□□□□ 0.41
SKA3-206ENST00000475251 C4BP0C0L5 1744 aa17.61■□□□□ 0.41
SKA3-206ENST00000475251 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
SKA3-206ENST00000475251 HSP90AB2PQ58FF8 381 aa17.6■□□□□ 0.41
SKA3-206ENST00000475251 KIF20BQ96Q89 1820 aa17.59■□□□□ 0.41
SKA3-206ENST00000475251 ADCY9O60503 1353 aa17.57■□□□□ 0.4
SKA3-206ENST00000475251 CYP27B1O15528 508 aa17.57■□□□□ 0.4
SKA3-206ENST00000475251 SSFA2P28290 1259 aa17.57■□□□□ 0.4
SKA3-206ENST00000475251 SPG7Q9UQ90 795 aa17.57■□□□□ 0.4
SKA3-206ENST00000475251 ITGB4P16144 1822 aa17.56■□□□□ 0.4
SKA3-206ENST00000475251 PKD1L3Q7Z443 1732 aa17.56■□□□□ 0.4
SKA3-206ENST00000475251 IGSF1Q8N6C5 1336 aa17.56■□□□□ 0.4
SKA3-206ENST00000475251 TOGARAM1Q9Y4F4 1720 aa17.55■□□□□ 0.4
SKA3-206ENST00000475251 UBR3Q6ZT12 1888 aa17.55■□□□□ 0.4
SKA3-206ENST00000475251 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.55■□□□□ 0.4
SKA3-206ENST00000475251 PHF14O94880 888 aa17.55■□□□□ 0.4
SKA3-206ENST00000475251 HSPA6P17066 643 aa17.54■□□□□ 0.4
SKA3-206ENST00000475251 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
SKA3-206ENST00000475251 ZNF526Q8TF50 670 aaPredicted RBP17.53■□□□□ 0.4
SKA3-206ENST00000475251 PIGBQ92521 554 aa17.53■□□□□ 0.4
SKA3-206ENST00000475251 LOC102724428A0A0B4J2F2 783 aa17.52■□□□□ 0.4
SKA3-206ENST00000475251 SIK1P57059 783 aa17.52■□□□□ 0.4
SKA3-206ENST00000475251 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.52■□□□□ 0.4
SKA3-206ENST00000475251 TMOD3Q9NYL9 352 aa17.52■□□□□ 0.4
SKA3-206ENST00000475251 NCAPD2Q15021 1401 aa17.52■□□□□ 0.4
SKA3-206ENST00000475251 CEP350Q5VT06 3117 aa17.52■□□□□ 0.39
SKA3-206ENST00000475251 EMILIN1Q9Y6C2 1016 aa17.5■□□□□ 0.39
SKA3-206ENST00000475251 MAP2P11137 1827 aaKnown RBP17.49■□□□□ 0.39
SKA3-206ENST00000475251 GNPATO15228 680 aa17.49■□□□□ 0.39
SKA3-206ENST00000475251 PPM1GO15355 546 aaPredicted RBP17.49■□□□□ 0.39
SKA3-206ENST00000475251 AMIGO3Q86WK7 504 aa17.49■□□□□ 0.39
SKA3-206ENST00000475251 LINC00116Q8NCU8 138 aa17.49■□□□□ 0.39
SKA3-206ENST00000475251 WASHC2AQ641Q2 1341 aa17.48■□□□□ 0.39
SKA3-206ENST00000475251 CICQ96RK0 1608 aaPredicted RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms