RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 PEAK1Q9H792 1746 aa9.58□□□□□ -0.88
LIMD1-204ENST00000474665 MAP3K19Q56UN5 1328 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 KIF3CO14782 793 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 HTRA3P83110 453 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 RRS1Q15050 365 aaKnown RBP9.57□□□□□ -0.88
LIMD1-204ENST00000474665 CC2D1BQ5T0F9 858 aaKnown RBP9.57□□□□□ -0.88
LIMD1-204ENST00000474665 LARP1Q6PKG0 1096 aaKnown RBP9.57□□□□□ -0.88
LIMD1-204ENST00000474665 TCP11L2Q8N4U5 519 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 KCNH5Q8NCM2 988 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 WWC3Q9ULE0 1092 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 NSD2O96028 1365 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 AATKQ6ZMQ8 1374 aa9.57□□□□□ -0.88
LIMD1-204ENST00000474665 POLKQ9UBT6 870 aa9.56□□□□□ -0.88
LIMD1-204ENST00000474665 EMILIN1Q9Y6C2 1016 aa9.56□□□□□ -0.88
LIMD1-204ENST00000474665 TNNT2P45379 298 aaPredicted RBP9.55□□□□□ -0.88
LIMD1-204ENST00000474665 JMYQ8N9B5 988 aa9.55□□□□□ -0.88
LIMD1-204ENST00000474665 KLRG1Q96E93 195 aa9.55□□□□□ -0.88
LIMD1-204ENST00000474665 RGPD3A6NKT7 1758 aaPredicted RBP9.55□□□□□ -0.88
LIMD1-204ENST00000474665 RGPD4Q7Z3J3 1758 aa9.55□□□□□ -0.88
LIMD1-204ENST00000474665 CNGB1Q14028 1251 aaPredicted RBP9.54□□□□□ -0.88
LIMD1-204ENST00000474665 MORC1Q86VD1 984 aa9.54□□□□□ -0.88
LIMD1-204ENST00000474665 IP6K1Q92551 441 aa9.54□□□□□ -0.88
LIMD1-204ENST00000474665 RGPD2P0DJD1 1756 aa9.54□□□□□ -0.88
LIMD1-204ENST00000474665 OVOS2A0A0G2JMS6 1433 aa9.54□□□□□ -0.88
LIMD1-204ENST00000474665 COL5A2P05997 1499 aaPredicted RBP9.53□□□□□ -0.88
LIMD1-204ENST00000474665 GOLGB1Q14789 3259 aaKnown RBP9.53□□□□□ -0.88
LIMD1-204ENST00000474665 ADCY9O60503 1353 aa9.53□□□□□ -0.88
LIMD1-204ENST00000474665 ABCC6O95255 1503 aa9.53□□□□□ -0.88
LIMD1-204ENST00000474665 ZBTB7CA1YPR0 619 aa9.53□□□□□ -0.88
LIMD1-204ENST00000474665 HOXC9P31274 260 aa9.53□□□□□ -0.88
LIMD1-204ENST00000474665 HSP90AB2PQ58FF8 381 aa9.53□□□□□ -0.88
LIMD1-204ENST00000474665 SMG6Q86US8 1419 aaKnown RBP9.53□□□□□ -0.88
LIMD1-204ENST00000474665 POLD1P28340 1107 aa9.52□□□□□ -0.89
LIMD1-204ENST00000474665 SBF2Q86WG5 1849 aa9.51□□□□□ -0.89
LIMD1-204ENST00000474665 ERBB3P21860 1342 aa9.51□□□□□ -0.89
LIMD1-204ENST00000474665 RTL1A6NKG5 1358 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 FLT4P35916 1363 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 KIF24Q5T7B8 1368 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 PPP2R1AP30153 589 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 AMPHP49418 695 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 MTHFSP49914 203 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 ZNF827Q17R98 1081 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 THRAP3Q9Y2W1 955 aaKnown RBP9.5□□□□□ -0.89
LIMD1-204ENST00000474665 COL3A1P02461 1466 aaPredicted RBP9.5□□□□□ -0.89
LIMD1-204ENST00000474665 WDR17Q8IZU2 1322 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 INSRP06213 1382 aa9.5□□□□□ -0.89
LIMD1-204ENST00000474665 PPM1GO15355 546 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-204ENST00000474665 TOMM70O94826 608 aa9.49□□□□□ -0.89
LIMD1-204ENST00000474665 DDB1Q16531 1140 aa9.49□□□□□ -0.89
LIMD1-204ENST00000474665 MARCH10Q8NA82 808 aaPredicted RBP9.49□□□□□ -0.89
LIMD1-204ENST00000474665 ANKRD24Q8TF21 1146 aa9.49□□□□□ -0.89
LIMD1-204ENST00000474665 FAM208AQ9UK61 1670 aaKnown RBP9.48□□□□□ -0.89
LIMD1-204ENST00000474665 EIF4A2Q14240 407 aaKnown RBP9.48□□□□□ -0.89
LIMD1-204ENST00000474665 NBPF6Q5VWK0 638 aa9.48□□□□□ -0.89
LIMD1-204ENST00000474665 LTV1Q96GA3 475 aaPredicted RBP9.48□□□□□ -0.89
LIMD1-204ENST00000474665 NBPF4Q96M43 638 aa9.48□□□□□ -0.89
LIMD1-204ENST00000474665 PRKRIP1Q9H875 184 aaPredicted RBP9.48□□□□□ -0.89
LIMD1-204ENST00000474665 PARP4Q9UKK3 1724 aaKnown RBP9.48□□□□□ -0.89
LIMD1-204ENST00000474665 CRB1P82279 1406 aa9.48□□□□□ -0.89
LIMD1-204ENST00000474665 WDR90Q96KV7 1748 aa9.47□□□□□ -0.89
LIMD1-204ENST00000474665 NCAPD2Q15021 1401 aa9.47□□□□□ -0.89
LIMD1-204ENST00000474665 HSPA1AP0DMV8 641 aaKnown RBP9.46□□□□□ -0.9
LIMD1-204ENST00000474665 HSPA1BP0DMV9 641 aaKnown RBP9.46□□□□□ -0.9
LIMD1-204ENST00000474665 IL13P35225 146 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 RALBP1Q15311 655 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 FAM161AQ3B820 660 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 SLC16A10Q8TF71 515 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 EYA1Q99502 592 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 CARD10Q9BWT7 1032 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 WNK3Q9BYP7 1800 aa9.46□□□□□ -0.9
LIMD1-204ENST00000474665 CCDC184Q52MB2 194 aa9.45□□□□□ -0.9
LIMD1-204ENST00000474665 TOM1L2Q6ZVM7 507 aa9.45□□□□□ -0.9
LIMD1-204ENST00000474665 USHBP1Q8N6Y0 703 aa9.45□□□□□ -0.9
LIMD1-204ENST00000474665 NLRP2Q9NX02 1062 aa9.45□□□□□ -0.9
LIMD1-204ENST00000474665 CSB-PGBD3P0DP91 1061 aa9.44□□□□□ -0.9
LIMD1-204ENST00000474665 LRRC4BQ9NT99 713 aa9.44□□□□□ -0.9
LIMD1-204ENST00000474665 LRRC37A3O60309 1634 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 MEGF6O75095 1541 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 TNS2Q63HR2 1409 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 PNPLA7Q6ZV29 1317 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 IGSF1Q8N6C5 1336 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 MYBBP1AQ9BQG0 1328 aaKnown RBP9.43□□□□□ -0.9
LIMD1-204ENST00000474665 AEBP1Q8IUX7 1158 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 AKT1S1Q96B36 256 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 ACSBG1Q96GR2 724 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 NMRK2Q9NPI5 230 aa9.43□□□□□ -0.9
LIMD1-204ENST00000474665 KAT6BQ8WYB5 2073 aa9.42□□□□□ -0.9
LIMD1-204ENST00000474665 PAPPAQ13219 1627 aa9.42□□□□□ -0.9
LIMD1-204ENST00000474665 BCL9O00512 1426 aa9.41□□□□□ -0.9
LIMD1-204ENST00000474665 KDRP35968 1356 aa9.41□□□□□ -0.9
LIMD1-204ENST00000474665 DIAPH1O60610 1272 aaKnown RBP9.41□□□□□ -0.9
LIMD1-204ENST00000474665 COL24A1Q17RW2 1714 aa9.4□□□□□ -0.9
LIMD1-204ENST00000474665 RBM46Q8TBY0 533 aaKnown RBP9.4□□□□□ -0.9
LIMD1-204ENST00000474665 IL2RBP14784 551 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 KCNQ4P56696 695 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 MSL1Q68DK7 614 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 SULT6B1Q6IMI4 303 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 TFCP2L1Q9NZI6 479 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 PKD1L3Q7Z443 1732 aa9.39□□□□□ -0.91
LIMD1-204ENST00000474665 PCNTO95613 3336 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms