RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 NHSQ6T4R5 1651 aa20.64■□□□□ 0.89
LIMS1-212ENST00000474038 SMG6Q86US8 1419 aaKnown RBP20.63■□□□□ 0.89
LIMS1-212ENST00000474038 NBPF14Q5TI25 921 aa20.63■□□□□ 0.89
LIMS1-212ENST00000474038 NPC1L1Q9UHC9 1359 aa20.62■□□□□ 0.89
LIMS1-212ENST00000474038 KAT6BQ8WYB5 2073 aa20.62■□□□□ 0.89
LIMS1-212ENST00000474038 CC2D1BQ5T0F9 858 aaKnown RBP20.62■□□□□ 0.89
LIMS1-212ENST00000474038 NBPF6Q5VWK0 638 aa20.62■□□□□ 0.89
LIMS1-212ENST00000474038 NBPF4Q96M43 638 aa20.62■□□□□ 0.89
LIMS1-212ENST00000474038 PROM2Q8N271 834 aa20.61■□□□□ 0.89
LIMS1-212ENST00000474038 USHBP1Q8N6Y0 703 aa20.61■□□□□ 0.89
LIMS1-212ENST00000474038 DDX54Q8TDD1 881 aaKnown RBP20.61■□□□□ 0.89
LIMS1-212ENST00000474038 MEGF6O75095 1541 aa20.61■□□□□ 0.89
LIMS1-212ENST00000474038 ANO8Q9HCE9 1232 aaPredicted RBP20.6■□□□□ 0.89
LIMS1-212ENST00000474038 SHANK3Q9BYB0 1731 aa20.58■□□□□ 0.88
LIMS1-212ENST00000474038 CNGB1Q14028 1251 aaPredicted RBP20.57■□□□□ 0.88
LIMS1-212ENST00000474038 TXNRD1Q16881 649 aa20.57■□□□□ 0.88
LIMS1-212ENST00000474038 BTAF1O14981 1849 aa20.57■□□□□ 0.88
LIMS1-212ENST00000474038 EIF4A2Q14240 407 aaKnown RBP20.55■□□□□ 0.88
LIMS1-212ENST00000474038 ZCRB1Q8TBF4 217 aaKnown RBP20.55■□□□□ 0.88
LIMS1-212ENST00000474038 NCAPD2Q15021 1401 aa20.54■□□□□ 0.88
LIMS1-212ENST00000474038 RAPGEF4Q8WZA2 1011 aa20.53■□□□□ 0.88
LIMS1-212ENST00000474038 EYA1Q99502 592 aa20.53■□□□□ 0.88
LIMS1-212ENST00000474038 DOT1LQ8TEK3 1739 aa20.53■□□□□ 0.88
LIMS1-212ENST00000474038 MTHFSP49914 203 aa20.52■□□□□ 0.88
LIMS1-212ENST00000474038 TATP17735 454 aaPredicted RBP20.51■□□□□ 0.87
LIMS1-212ENST00000474038 PKD1L3Q7Z443 1732 aa20.5■□□□□ 0.87
LIMS1-212ENST00000474038 SYTL4Q96C24 671 aaPredicted RBP20.5■□□□□ 0.87
LIMS1-212ENST00000474038 PRIM1P49642 420 aaKnown RBP20.49■□□□□ 0.87
LIMS1-212ENST00000474038 DDX10Q13206 875 aaKnown RBP20.49■□□□□ 0.87
LIMS1-212ENST00000474038 PDGFDQ9GZP0 370 aaPredicted RBP20.49■□□□□ 0.87
LIMS1-212ENST00000474038 CASZ1Q86V15 1759 aa20.49■□□□□ 0.87
LIMS1-212ENST00000474038 STK32BQ9NY57 414 aa20.48■□□□□ 0.87
LIMS1-212ENST00000474038 IGSF1Q8N6C5 1336 aa20.48■□□□□ 0.87
LIMS1-212ENST00000474038 PAPPAQ13219 1627 aa20.47■□□□□ 0.87
LIMS1-212ENST00000474038 IL13P35225 146 aa20.46■□□□□ 0.87
LIMS1-212ENST00000474038 SLC15A2Q16348 729 aa20.46■□□□□ 0.87
LIMS1-212ENST00000474038 SPON1Q9HCB6 807 aa20.46■□□□□ 0.87
LIMS1-212ENST00000474038 LRRC4BQ9NT99 713 aa20.46■□□□□ 0.87
LIMS1-212ENST00000474038 PCDH11XQ9BZA7 1347 aa20.45■□□□□ 0.86
LIMS1-212ENST00000474038 PCDH11YQ9BZA8 1340 aa20.45■□□□□ 0.86
LIMS1-212ENST00000474038 COL3A1P02461 1466 aaPredicted RBP20.44■□□□□ 0.86
LIMS1-212ENST00000474038 CYP27B1O15528 508 aa20.43■□□□□ 0.86
LIMS1-212ENST00000474038 ZBTB7AO95365 584 aa20.43■□□□□ 0.86
LIMS1-212ENST00000474038 PPP2R1AP30153 589 aa20.43■□□□□ 0.86
LIMS1-212ENST00000474038 KCNQ4P56696 695 aa20.42■□□□□ 0.86
LIMS1-212ENST00000474038 ZNF827Q17R98 1081 aa20.42■□□□□ 0.86
LIMS1-212ENST00000474038 AEBP1Q8IUX7 1158 aa20.41■□□□□ 0.86
LIMS1-212ENST00000474038 LY75O60449 1722 aa20.4■□□□□ 0.86
LIMS1-212ENST00000474038 DIAPH1O60610 1272 aaKnown RBP20.4■□□□□ 0.86
LIMS1-212ENST00000474038 ITGB4P16144 1822 aa20.4■□□□□ 0.86
LIMS1-212ENST00000474038 PPP1R1BQ9UD71 204 aaPredicted RBP20.4■□□□□ 0.86
LIMS1-212ENST00000474038 TOGARAM1Q9Y4F4 1720 aa20.39■□□□□ 0.86
LIMS1-212ENST00000474038 KDRP35968 1356 aa20.39■□□□□ 0.85
LIMS1-212ENST00000474038 SLC27A3Q5K4L6 730 aa20.39■□□□□ 0.85
LIMS1-212ENST00000474038 SULT6B1Q6IMI4 303 aa20.39■□□□□ 0.85
LIMS1-212ENST00000474038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.39■□□□□ 0.85
LIMS1-212ENST00000474038 SPG7Q9UQ90 795 aa20.39■□□□□ 0.85
LIMS1-212ENST00000474038 ATF5Q9Y2D1 282 aaPredicted RBP20.39■□□□□ 0.85
LIMS1-212ENST00000474038 PLEKHG2Q9H7P9 1386 aa20.38■□□□□ 0.85
LIMS1-212ENST00000474038 ZNF316A6NFI3 1004 aaPredicted RBP20.37■□□□□ 0.85
LIMS1-212ENST00000474038 MPRIPQ6WCQ1 1025 aa20.36■□□□□ 0.85
LIMS1-212ENST00000474038 AKT1S1Q96B36 256 aa20.36■□□□□ 0.85
LIMS1-212ENST00000474038 CFAP53Q96M91 514 aa20.36■□□□□ 0.85
LIMS1-212ENST00000474038 VIRMAQ69YN4 1812 aaKnown RBP20.35■□□□□ 0.85
LIMS1-212ENST00000474038 PTGER2P43116 358 aa20.35■□□□□ 0.85
LIMS1-212ENST00000474038 CCNL1Q9UK58 526 aaPredicted RBP20.35■□□□□ 0.85
LIMS1-212ENST00000474038 HMOX1P09601 288 aa20.34■□□□□ 0.85
LIMS1-212ENST00000474038 TUBGCP6Q96RT7 1819 aa20.33■□□□□ 0.85
LIMS1-212ENST00000474038 NKX1-1Q15270 411 aaPredicted RBP20.33■□□□□ 0.85
LIMS1-212ENST00000474038 RALBP1Q15311 655 aa20.33■□□□□ 0.85
LIMS1-212ENST00000474038 PLEKHO1Q53GL0 409 aaPredicted RBP20.33■□□□□ 0.85
LIMS1-212ENST00000474038 MTFR1LQ9H019 292 aa20.33■□□□□ 0.85
LIMS1-212ENST00000474038 U2SURPO15042 1029 aaKnown RBP20.32■□□□□ 0.84
LIMS1-212ENST00000474038 PHKG2P15735 406 aa20.32■□□□□ 0.84
LIMS1-212ENST00000474038 IFNL2Q8IZJ0 200 aa20.32■□□□□ 0.84
LIMS1-212ENST00000474038 PALLDQ8WX93 1383 aa20.32■□□□□ 0.84
LIMS1-212ENST00000474038 QSER1Q2KHR3 1735 aa20.31■□□□□ 0.84
LIMS1-212ENST00000474038 AMOTQ4VCS5 1084 aa20.31■□□□□ 0.84
LIMS1-212ENST00000474038 PNPLA7Q6ZV29 1317 aa20.3■□□□□ 0.84
LIMS1-212ENST00000474038 PIGBQ92521 554 aa20.3■□□□□ 0.84
LIMS1-212ENST00000474038 SGIP1Q9BQI5 828 aa20.3■□□□□ 0.84
LIMS1-212ENST00000474038 TFCP2L1Q9NZI6 479 aa20.3■□□□□ 0.84
LIMS1-212ENST00000474038 SCN11AQ9UI33 1791 aa20.29■□□□□ 0.84
LIMS1-212ENST00000474038 ZNF530Q6P9A1 599 aaPredicted RBP20.29■□□□□ 0.84
LIMS1-212ENST00000474038 NUDCQ9Y266 331 aa20.28■□□□□ 0.84
LIMS1-212ENST00000474038 C5P01031 1676 aa20.28■□□□□ 0.84
LIMS1-212ENST00000474038 SMARCC1Q92922 1105 aaPredicted RBP20.26■□□□□ 0.83
LIMS1-212ENST00000474038 TMOD3Q9NYL9 352 aa20.26■□□□□ 0.83
LIMS1-212ENST00000474038 TAF1LQ8IZX4 1826 aa20.25■□□□□ 0.83
LIMS1-212ENST00000474038 HSP90AB1P08238 724 aaKnown RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 U2AF1L5P0DN76 240 aaPredicted RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 U2AF1Q01081 240 aaKnown RBP eCLIP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 C1orf141Q5JVX7 400 aa20.24■□□□□ 0.83
LIMS1-212ENST00000474038 SLC16A10Q8TF71 515 aa20.24■□□□□ 0.83
LIMS1-212ENST00000474038 FHDC1Q9C0D6 1143 aaPredicted RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 PRKRIP1Q9H875 184 aaPredicted RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 ASAP1Q9ULH1 1129 aa20.24■□□□□ 0.83
LIMS1-212ENST00000474038 KDM6AO15550 1401 aaPredicted RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 MYBBP1AQ9BQG0 1328 aaKnown RBP20.24■□□□□ 0.83
LIMS1-212ENST00000474038 DCAF5Q96JK2 942 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms