RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 HMGXB3Q12766 1538 aa8.33□□□□□ -1.08
RTF1-203ENST00000473214 ZC3H4Q9UPT8 1303 aaKnown RBP8.32□□□□□ -1.08
RTF1-203ENST00000473214 LOC102724159A0A0B4J2E5 919 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 A0A0U1RQG5 324 aaPredicted RBP8.32□□□□□ -1.08
RTF1-203ENST00000473214 CFAP99D6REC4 459 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 F12P00748 615 aaPredicted RBP8.32□□□□□ -1.08
RTF1-203ENST00000473214 CTHP32929 405 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 PWP2Q15269 919 aaKnown RBP8.32□□□□□ -1.08
RTF1-203ENST00000473214 SKIV2LQ15477 1246 aaKnown RBP8.32□□□□□ -1.08
RTF1-203ENST00000473214 SH3D19Q5HYK7 790 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 RIPOR2Q9Y4F9 1068 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 PCDHB15Q9Y5E8 787 aa8.32□□□□□ -1.08
RTF1-203ENST00000473214 DIXDC1Q155Q3 683 aa8.31□□□□□ -1.08
RTF1-203ENST00000473214 UBXN4Q92575 508 aa8.31□□□□□ -1.08
RTF1-203ENST00000473214 FOXJ1Q92949 421 aa8.31□□□□□ -1.08
RTF1-203ENST00000473214 RIMBP3CA6NJZ7 1639 aa8.3□□□□□ -1.08
RTF1-203ENST00000473214 RIMBP3BA6NNM3 1639 aa8.3□□□□□ -1.08
RTF1-203ENST00000473214 RIMBP3Q9UFD9 1639 aa8.3□□□□□ -1.08
RTF1-203ENST00000473214 SPTLC1O15269 473 aa8.3□□□□□ -1.08
RTF1-203ENST00000473214 EXOC8Q8IYI6 725 aa8.3□□□□□ -1.08
RTF1-203ENST00000473214 MAN1A2O60476 641 aa8.29□□□□□ -1.08
RTF1-203ENST00000473214 GLMNQ92990 594 aa8.29□□□□□ -1.08
RTF1-203ENST00000473214 SIRT1Q96EB6 747 aa8.29□□□□□ -1.08
RTF1-203ENST00000473214 MAP10Q9P2G4 905 aa8.29□□□□□ -1.08
RTF1-203ENST00000473214 LAMC3Q9Y6N6 1575 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.28□□□□□ -1.08
RTF1-203ENST00000473214 PPFIA3O75145 1194 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 ZIC2O95409 532 aaPredicted RBP8.28□□□□□ -1.08
RTF1-203ENST00000473214 GRM5P41594 1212 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 NR5A1Q13285 461 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 C4orf48Q5BLP8 95 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 TXNDC2Q86VQ3 553 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 TEX2Q8IWB9 1127 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 WWC1Q8IX03 1113 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 ITPKCQ96DU7 683 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 ZBTB3Q9H5J0 574 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 MYH16Q9H6N6 1097 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 SMARCA4P51532 1647 aa8.28□□□□□ -1.08
RTF1-203ENST00000473214 NR3C2P08235 984 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 RFX1P22670 979 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 FGD1P98174 961 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 ARID5BQ14865 1188 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 PRPF38BQ5VTL8 546 aaKnown RBP8.27□□□□□ -1.09
RTF1-203ENST00000473214 ZFAND3Q9H8U3 227 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 VRTNQ9H8Y1 702 aa8.27□□□□□ -1.09
RTF1-203ENST00000473214 WDR62O43379 1518 aa8.26□□□□□ -1.09
RTF1-203ENST00000473214 ZC3H6P61129 1189 aaKnown RBP8.26□□□□□ -1.09
RTF1-203ENST00000473214 TMEM151AQ8N4L1 468 aa8.26□□□□□ -1.09
RTF1-203ENST00000473214 CCDC136Q96JN2 1154 aa8.26□□□□□ -1.09
RTF1-203ENST00000473214 PPME1Q9Y570 386 aa8.26□□□□□ -1.09
RTF1-203ENST00000473214 RASSF7Q02833 373 aa8.25□□□□□ -1.09
RTF1-203ENST00000473214 SF3A1Q15459 793 aaKnown RBP8.25□□□□□ -1.09
RTF1-203ENST00000473214 C6orf118Q5T5N4 469 aa8.25□□□□□ -1.09
RTF1-203ENST00000473214 RIC3Q7Z5B4 369 aa8.25□□□□□ -1.09
RTF1-203ENST00000473214 MICAL1Q8TDZ2 1067 aa8.25□□□□□ -1.09
RTF1-203ENST00000473214 MRC2Q9UBG0 1479 aa8.25□□□□□ -1.09
RTF1-203ENST00000473214 BAZ1BQ9UIG0 1483 aaKnown RBP8.25□□□□□ -1.09
RTF1-203ENST00000473214 PER1O15534 1290 aaPredicted RBP8.24□□□□□ -1.09
RTF1-203ENST00000473214 GDF11O95390 407 aa8.24□□□□□ -1.09
RTF1-203ENST00000473214 ZNF16P17020 682 aaPredicted RBP8.24□□□□□ -1.09
RTF1-203ENST00000473214 GORABQ5T7V8 394 aa8.24□□□□□ -1.09
RTF1-203ENST00000473214 BPHLQ86WA6 291 aaPredicted RBP8.24□□□□□ -1.09
RTF1-203ENST00000473214 CABLES1Q8TDN4 633 aa8.24□□□□□ -1.09
RTF1-203ENST00000473214 SNRKQ9NRH2 765 aa8.24□□□□□ -1.09
RTF1-203ENST00000473214 POM121CA8CG34 1229 aa8.23□□□□□ -1.09
RTF1-203ENST00000473214 TPD52L2O43399 206 aaKnown RBP8.23□□□□□ -1.09
RTF1-203ENST00000473214 SETQ01105 290 aaPredicted RBP8.23□□□□□ -1.09
RTF1-203ENST00000473214 GIMAP6Q6P9H5 292 aa8.23□□□□□ -1.09
RTF1-203ENST00000473214 PKNOX2Q96KN3 472 aa8.23□□□□□ -1.09
RTF1-203ENST00000473214 ERCC3P19447 782 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 KRT76Q01546 638 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 AGERQ15109 404 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 MEIOBQ8N635 442 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 GPR161Q8N6U8 529 aaKnown RBP8.22□□□□□ -1.09
RTF1-203ENST00000473214 PROCA1Q8NCQ7 364 aaPredicted RBP8.22□□□□□ -1.09
RTF1-203ENST00000473214 C1QTNF2Q9BXJ5 285 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 BCL2L13Q9BXK5 485 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 GDPD2Q9HCC8 539 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 ADAMTS8Q9UP79 889 aa8.22□□□□□ -1.09
RTF1-203ENST00000473214 PDS5BQ9NTI5 1447 aa8.21□□□□□ -1.09
RTF1-203ENST00000473214 ARHGEF11O15085 1522 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 BMP2P12643 396 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 ZNF662Q6ZS27 426 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 SH3RF1Q7Z6J0 888 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 LINC00528Q8N1L1 170 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 PLCD4Q9BRC7 762 aa8.21□□□□□ -1.1
RTF1-203ENST00000473214 GNEQ9Y223 722 aaKnown RBP8.21□□□□□ -1.1
RTF1-203ENST00000473214 UPP2O95045 317 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 TUSC1Q2TAM9 212 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 NAALADL2Q58DX5 795 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 HSP90AB4PQ58FF6 505 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 ARMC2Q8NEN0 867 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 DNMT3LQ9UJW3 386 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 SUGT1Q9Y2Z0 365 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 MAP4K5Q9Y4K4 846 aa8.2□□□□□ -1.1
RTF1-203ENST00000473214 SOS2Q07890 1332 aaPredicted RBP8.2□□□□□ -1.1
RTF1-203ENST00000473214 RAB11FIP3O75154 756 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 ABL2P42684 1182 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 QPCTQ16769 361 aa8.19□□□□□ -1.1
RTF1-203ENST00000473214 CSPP1Q1MSJ5 1256 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms