RNA–Protein interactions for RNA: ENST00000472027.1

SYN3-211, Transcript of synapsin III, humanhuman

TSL 4

Gene SYN3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-211ENST00000472027 RGPD2P0DJD1 1756 aa12.46□□□□□ -0.41
SYN3-211ENST00000472027 TNS1Q9HBL0 1735 aaKnown RBP12.46□□□□□ -0.41
SYN3-211ENST00000472027 PARD3Q8TEW0 1356 aa12.44□□□□□ -0.42
SYN3-211ENST00000472027 MTHFSP49914 203 aa12.44□□□□□ -0.42
SYN3-211ENST00000472027 NPC1L1Q9UHC9 1359 aa12.43□□□□□ -0.42
SYN3-211ENST00000472027 NCAPD2Q15021 1401 aa12.43□□□□□ -0.42
SYN3-211ENST00000472027 SBF2Q86WG5 1849 aa12.42□□□□□ -0.42
SYN3-211ENST00000472027 IL13P35225 146 aa12.42□□□□□ -0.42
SYN3-211ENST00000472027 PRIM1P49642 420 aaKnown RBP12.42□□□□□ -0.42
SYN3-211ENST00000472027 PROM2Q8N271 834 aa12.42□□□□□ -0.42
SYN3-211ENST00000472027 IGSF1Q8N6C5 1336 aa12.41□□□□□ -0.42
SYN3-211ENST00000472027 PSDA5PKW4 1024 aaPredicted RBP12.41□□□□□ -0.42
SYN3-211ENST00000472027 CYP27B1O15528 508 aa12.41□□□□□ -0.42
SYN3-211ENST00000472027 SYTL4Q96C24 671 aaPredicted RBP12.41□□□□□ -0.42
SYN3-211ENST00000472027 SPG7Q9UQ90 795 aa12.41□□□□□ -0.42
SYN3-211ENST00000472027 PCDH11XQ9BZA7 1347 aa12.4□□□□□ -0.42
SYN3-211ENST00000472027 PCDH11YQ9BZA8 1340 aa12.4□□□□□ -0.42
SYN3-211ENST00000472027 R3HDM1Q15032 1099 aaKnown RBP12.4□□□□□ -0.42
SYN3-211ENST00000472027 TXNRD1Q16881 649 aa12.4□□□□□ -0.42
SYN3-211ENST00000472027 NBPF14Q5TI25 921 aa12.4□□□□□ -0.42
SYN3-211ENST00000472027 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.4□□□□□ -0.424e-13■■■■■ 49.9
SYN3-211ENST00000472027 ZEB1P37275 1124 aaPredicted RBP12.39□□□□□ -0.43
SYN3-211ENST00000472027 SULT6B1Q6IMI4 303 aa12.39□□□□□ -0.43
SYN3-211ENST00000472027 DIAPH1O60610 1272 aaKnown RBP12.38□□□□□ -0.43
SYN3-211ENST00000472027 AEBP1Q8IUX7 1158 aa12.38□□□□□ -0.43
SYN3-211ENST00000472027 NHSQ6T4R5 1651 aa12.38□□□□□ -0.43
SYN3-211ENST00000472027 SHANK3Q9BYB0 1731 aa12.37□□□□□ -0.43
SYN3-211ENST00000472027 NKX1-1Q15270 411 aaPredicted RBP12.37□□□□□ -0.43
SYN3-211ENST00000472027 PLEKHO1Q53GL0 409 aaPredicted RBP12.37□□□□□ -0.43
SYN3-211ENST00000472027 IFNL2Q8IZJ0 200 aa12.37□□□□□ -0.43
SYN3-211ENST00000472027 PHKG2P15735 406 aa12.36□□□□□ -0.43
SYN3-211ENST00000472027 RREB1Q92766 1687 aa12.35□□□□□ -0.43
SYN3-211ENST00000472027 PPP2R1AP30153 589 aa12.35□□□□□ -0.43
SYN3-211ENST00000472027 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
SYN3-211ENST00000472027 AMOTQ4VCS5 1084 aa12.35□□□□□ -0.43
SYN3-211ENST00000472027 MPRIPQ6WCQ1 1025 aa12.35□□□□□ -0.43
SYN3-211ENST00000472027 NUP188Q5SRE5 1749 aa12.34□□□□□ -0.43
SYN3-211ENST00000472027 PLEKHG2Q9H7P9 1386 aa12.34□□□□□ -0.43
SYN3-211ENST00000472027 HMOX1P09601 288 aa12.34□□□□□ -0.43
SYN3-211ENST00000472027 ANO8Q9HCE9 1232 aaPredicted RBP12.34□□□□□ -0.43
SYN3-211ENST00000472027 LRRC4BQ9NT99 713 aa12.34□□□□□ -0.43
SYN3-211ENST00000472027 RGPD3A6NKT7 1758 aaPredicted RBP12.33□□□□□ -0.44
SYN3-211ENST00000472027 RGPD4Q7Z3J3 1758 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 KDRP35968 1356 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 SLC15A2Q16348 729 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 SLC27A3Q5K4L6 730 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 STK32BQ9NY57 414 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 PKD1L3Q7Z443 1732 aa12.33□□□□□ -0.44
SYN3-211ENST00000472027 BTAF1O14981 1849 aa12.32□□□□□ -0.44
SYN3-211ENST00000472027 DOT1LQ8TEK3 1739 aa12.32□□□□□ -0.44
SYN3-211ENST00000472027 U2SURPO15042 1029 aaKnown RBP12.32□□□□□ -0.44
SYN3-211ENST00000472027 KCNQ4P56696 695 aa12.32□□□□□ -0.44
SYN3-211ENST00000472027 ZNF530Q6P9A1 599 aaPredicted RBP12.32□□□□□ -0.44
SYN3-211ENST00000472027 PIGBQ92521 554 aa12.32□□□□□ -0.44
SYN3-211ENST00000472027 CFAP53Q96M91 514 aa12.32□□□□□ -0.44
SYN3-211ENST00000472027 HSP90AB1P08238 724 aaKnown RBP12.31□□□□□ -0.44
SYN3-211ENST00000472027 C1orf141Q5JVX7 400 aa12.31□□□□□ -0.44
SYN3-211ENST00000472027 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
SYN3-211ENST00000472027 KAT6BQ8WYB5 2073 aa12.31□□□□□ -0.44
SYN3-211ENST00000472027 COL3A1P02461 1466 aaPredicted RBP12.3□□□□□ -0.44
SYN3-211ENST00000472027 SMARCC1Q92922 1105 aaPredicted RBP12.3□□□□□ -0.44
SYN3-211ENST00000472027 TMOD3Q9NYL9 352 aa12.3□□□□□ -0.44
SYN3-211ENST00000472027 CCNL1Q9UK58 526 aaPredicted RBP12.3□□□□□ -0.44
SYN3-211ENST00000472027 ERVV-2B6SEH9 535 aa12.29□□□□□ -0.44
SYN3-211ENST00000472027 MTHFSDQ2M296 383 aaKnown RBP12.29□□□□□ -0.44
SYN3-211ENST00000472027 AKAP4Q5JQC9 854 aa12.29□□□□□ -0.44
SYN3-211ENST00000472027 PDGFDQ9GZP0 370 aaPredicted RBP12.29□□□□□ -0.44
SYN3-211ENST00000472027 NUDCQ9Y266 331 aa12.29□□□□□ -0.44
SYN3-211ENST00000472027 ZNF827Q17R98 1081 aa12.28□□□□□ -0.44
SYN3-211ENST00000472027 AKT1S1Q96B36 256 aa12.28□□□□□ -0.44
SYN3-211ENST00000472027 ASAP1Q9ULH1 1129 aa12.28□□□□□ -0.44
SYN3-211ENST00000472027 PALLDQ8WX93 1383 aa12.28□□□□□ -0.44
SYN3-211ENST00000472027 CABP4P57796 275 aa12.27□□□□□ -0.45
SYN3-211ENST00000472027 ATG3Q9NT62 314 aa12.27□□□□□ -0.45
SYN3-211ENST00000472027 TOGARAM1Q9Y4F4 1720 aa12.27□□□□□ -0.45
SYN3-211ENST00000472027 U2AF1L5P0DN76 240 aaPredicted RBP12.26□□□□□ -0.45
SYN3-211ENST00000472027 U2AF1Q01081 240 aaKnown RBP eCLIP12.26□□□□□ -0.45
SYN3-211ENST00000472027 RALBP1Q15311 655 aa12.26□□□□□ -0.45
SYN3-211ENST00000472027 NFATC2IPQ8NCF5 419 aa12.26□□□□□ -0.45
SYN3-211ENST00000472027 LGR6Q9HBX8 967 aa12.26□□□□□ -0.45
SYN3-211ENST00000472027 SPON1Q9HCB6 807 aa12.26□□□□□ -0.45
SYN3-211ENST00000472027 KDM6AO15550 1401 aaPredicted RBP12.26□□□□□ -0.45
SYN3-211ENST00000472027 LOC102724428A0A0B4J2F2 783 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 ZBTB7AO95365 584 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 HMGB2P26583 209 aaKnown RBP12.25□□□□□ -0.45
SYN3-211ENST00000472027 SIK1P57059 783 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 RSPH6AQ9H0K4 717 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 TFCP2L1Q9NZI6 479 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 PAPPAQ13219 1627 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 LY75O60449 1722 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 ITGB4P16144 1822 aa12.25□□□□□ -0.45
SYN3-211ENST00000472027 RNMTO43148 476 aaKnown RBP12.24□□□□□ -0.45
SYN3-211ENST00000472027 FCHSD2O94868 740 aa12.24□□□□□ -0.45
SYN3-211ENST00000472027 PRKAR2BP31323 418 aa12.24□□□□□ -0.45
SYN3-211ENST00000472027 GAS2L2Q8NHY3 880 aa12.24□□□□□ -0.45
SYN3-211ENST00000472027 PHACTR3Q96KR7 559 aa12.24□□□□□ -0.45
SYN3-211ENST00000472027 PNPLA7Q6ZV29 1317 aa12.23□□□□□ -0.45
SYN3-211ENST00000472027 ATP6V1AP38606 617 aa12.23□□□□□ -0.45
SYN3-211ENST00000472027 ATF5Q9Y2D1 282 aaPredicted RBP12.23□□□□□ -0.45
SYN3-211ENST00000472027 LRP5O75197 1615 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms