RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-213ENST00000471978 POLR3GLQ9BT43 218 aa31.24■■■□□ 2.59
C9orf3-213ENST00000471978 KIF24Q5T7B8 1368 aa31.24■■■□□ 2.59
C9orf3-213ENST00000471978 ZBTB7AO95365 584 aa31.22■■■□□ 2.59
C9orf3-213ENST00000471978 RAPGEF4Q8WZA2 1011 aa31.22■■■□□ 2.59
C9orf3-213ENST00000471978 SYTL4Q96C24 671 aaPredicted RBP31.22■■■□□ 2.59
C9orf3-213ENST00000471978 EIF4G2P78344 907 aaKnown RBP eCLIP31.21■■■□□ 2.59
C9orf3-213ENST00000471978 CGNL1Q0VF96 1302 aa31.21■■■□□ 2.59
C9orf3-213ENST00000471978 PRIM1P49642 420 aaKnown RBP31.2■■■□□ 2.59
C9orf3-213ENST00000471978 EMILIN1Q9Y6C2 1016 aa31.2■■■□□ 2.59
C9orf3-213ENST00000471978 SHANK3Q9BYB0 1731 aa31.2■■■□□ 2.58
C9orf3-213ENST00000471978 LRRC4BQ9NT99 713 aa31.18■■■□□ 2.58
C9orf3-213ENST00000471978 HSPA5P11021 654 aaKnown RBP31.17■■■□□ 2.58
C9orf3-213ENST00000471978 TATP17735 454 aaPredicted RBP31.17■■■□□ 2.58
C9orf3-213ENST00000471978 ATF5Q9Y2D1 282 aaPredicted RBP31.17■■■□□ 2.58
C9orf3-213ENST00000471978 PAPPAQ13219 1627 aa31.16■■■□□ 2.58
C9orf3-213ENST00000471978 DOT1LQ8TEK3 1739 aa31.16■■■□□ 2.58
C9orf3-213ENST00000471978 PPM1GO15355 546 aaPredicted RBP31.16■■■□□ 2.58
C9orf3-213ENST00000471978 SLC27A3Q5K4L6 730 aa31.14■■■□□ 2.58
C9orf3-213ENST00000471978 PTGER2P43116 358 aa31.13■■■□□ 2.57
C9orf3-213ENST00000471978 ZNF827Q17R98 1081 aa31.13■■■□□ 2.57
C9orf3-213ENST00000471978 NSD2O96028 1365 aa31.12■■■□□ 2.57
C9orf3-213ENST00000471978 MTFR1LQ9H019 292 aa31.11■■■□□ 2.57
C9orf3-213ENST00000471978 WASHC2AQ641Q2 1341 aa31.09■■■□□ 2.57
C9orf3-213ENST00000471978 PCDH11XQ9BZA7 1347 aa31.09■■■□□ 2.57
C9orf3-213ENST00000471978 PCDH11YQ9BZA8 1340 aa31.09■■■□□ 2.57
C9orf3-213ENST00000471978 ANKRD26Q9UPS8 1709 aa31.08■■■□□ 2.57
C9orf3-213ENST00000471978 AKT1S1Q96B36 256 aa31.08■■■□□ 2.57
C9orf3-213ENST00000471978 KCNQ4P56696 695 aa31.07■■■□□ 2.56
C9orf3-213ENST00000471978 POLKQ9UBT6 870 aa31.07■■■□□ 2.56
C9orf3-213ENST00000471978 MAP2P11137 1827 aaKnown RBP31.06■■■□□ 2.56
C9orf3-213ENST00000471978 PANK3Q9H999 370 aa31.06■■■□□ 2.56
C9orf3-213ENST00000471978 TNNT2P45379 298 aaPredicted RBP31.05■■■□□ 2.56
C9orf3-213ENST00000471978 DCAF8L1A6NGE4 600 aa31.04■■■□□ 2.56
C9orf3-213ENST00000471978 CYP27B1O15528 508 aa31.03■■■□□ 2.56
C9orf3-213ENST00000471978 SGIP1Q9BQI5 828 aa31.03■■■□□ 2.56
C9orf3-213ENST00000471978 LY75O60449 1722 aa31.03■■■□□ 2.56
C9orf3-213ENST00000471978 NCAPD2Q15021 1401 aa31.02■■■□□ 2.56
C9orf3-213ENST00000471978 EYA1Q99502 592 aa31.02■■■□□ 2.56
C9orf3-213ENST00000471978 CCNL1Q9UK58 526 aaPredicted RBP31.02■■■□□ 2.56
C9orf3-213ENST00000471978 TFCP2L1Q9NZI6 479 aa31.01■■■□□ 2.55
C9orf3-213ENST00000471978 FHDC1Q9C0D6 1143 aaPredicted RBP30.98■■■□□ 2.55
C9orf3-213ENST00000471978 SPG7Q9UQ90 795 aa30.98■■■□□ 2.55
C9orf3-213ENST00000471978 PKD1L3Q7Z443 1732 aa30.98■■■□□ 2.55
C9orf3-213ENST00000471978 PNPLA7Q6ZV29 1317 aa30.98■■■□□ 2.55
C9orf3-213ENST00000471978 MPRIPQ6WCQ1 1025 aa30.97■■■□□ 2.55
C9orf3-213ENST00000471978 QSER1Q2KHR3 1735 aa30.96■■■□□ 2.55
C9orf3-213ENST00000471978 SLC16A10Q8TF71 515 aa30.96■■■□□ 2.55
C9orf3-213ENST00000471978 ARXQ96QS3 562 aa30.96■■■□□ 2.55
C9orf3-213ENST00000471978 EIF4A2Q14240 407 aaKnown RBP30.95■■■□□ 2.55
C9orf3-213ENST00000471978 SYT17Q9BSW7 474 aa30.95■■■□□ 2.55
C9orf3-213ENST00000471978 NKX1-1Q15270 411 aaPredicted RBP30.92■■■□□ 2.54
C9orf3-213ENST00000471978 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.92■■■□□ 2.54
C9orf3-213ENST00000471978 TOGARAM1Q9Y4F4 1720 aa30.92■■■□□ 2.54
C9orf3-213ENST00000471978 PALLDQ8WX93 1383 aa30.92■■■□□ 2.54
C9orf3-213ENST00000471978 TUBGCP6Q96RT7 1819 aa30.91■■■□□ 2.54
C9orf3-213ENST00000471978 YY1P25490 414 aa30.91■■■□□ 2.54
C9orf3-213ENST00000471978 MORC1Q86VD1 984 aa30.89■■■□□ 2.54
C9orf3-213ENST00000471978 POLD1P28340 1107 aa30.88■■■□□ 2.53
C9orf3-213ENST00000471978 KNSTRNQ9Y448 316 aa30.88■■■□□ 2.53
C9orf3-213ENST00000471978 ITGB4P16144 1822 aa30.88■■■□□ 2.53
C9orf3-213ENST00000471978 PIGBQ92521 554 aa30.87■■■□□ 2.53
C9orf3-213ENST00000471978 SMARCC1Q92922 1105 aaPredicted RBP30.87■■■□□ 2.53
C9orf3-213ENST00000471978 UTRNP46939 3433 aa30.86■■■□□ 2.53
C9orf3-213ENST00000471978 MSH5O43196 834 aa30.86■■■□□ 2.53
C9orf3-213ENST00000471978 HMGB2P26583 209 aaKnown RBP30.86■■■□□ 2.53
C9orf3-213ENST00000471978 IFNL2Q8IZJ0 200 aa30.86■■■□□ 2.53
C9orf3-213ENST00000471978 C5P01031 1676 aa30.85■■■□□ 2.53
C9orf3-213ENST00000471978 IGSF1Q8N6C5 1336 aa30.85■■■□□ 2.53
C9orf3-213ENST00000471978 PHKG2P15735 406 aa30.85■■■□□ 2.53
C9orf3-213ENST00000471978 MAP3K5Q99683 1374 aa30.84■■■□□ 2.53
C9orf3-213ENST00000471978 COL23A1Q86Y22 540 aaPredicted RBP30.84■■■□□ 2.53
C9orf3-213ENST00000471978 KIF7Q2M1P5 1343 aa30.82■■■□□ 2.52
C9orf3-213ENST00000471978 TMOD3Q9NYL9 352 aa30.82■■■□□ 2.52
C9orf3-213ENST00000471978 COL24A1Q17RW2 1714 aa30.81■■■□□ 2.52
C9orf3-213ENST00000471978 PLEKHG2Q9H7P9 1386 aa30.81■■■□□ 2.52
C9orf3-213ENST00000471978 KLHL34Q8N239 644 aa30.8■■■□□ 2.52
C9orf3-213ENST00000471978 TAF1LQ8IZX4 1826 aa30.79■■■□□ 2.52
C9orf3-213ENST00000471978 AMER1Q5JTC6 1135 aaPredicted RBP30.76■■■□□ 2.51
C9orf3-213ENST00000471978 FLAD1Q8NFF5 587 aa30.76■■■□□ 2.51
C9orf3-213ENST00000471978 ASAP1Q9ULH1 1129 aa30.76■■■□□ 2.51
C9orf3-213ENST00000471978 LOC102724428A0A0B4J2F2 783 aa30.75■■■□□ 2.51
C9orf3-213ENST00000471978 SIK1P57059 783 aa30.75■■■□□ 2.51
C9orf3-213ENST00000471978 PLEKHO1Q53GL0 409 aaPredicted RBP30.75■■■□□ 2.51
C9orf3-213ENST00000471978 AK7Q96M32 723 aa30.75■■■□□ 2.51
C9orf3-213ENST00000471978 C4BP0C0L5 1744 aa30.75■■■□□ 2.51
C9orf3-213ENST00000471978 MSL1Q68DK7 614 aa30.73■■■□□ 2.51
C9orf3-213ENST00000471978 AMOTQ4VCS5 1084 aa30.72■■■□□ 2.51
C9orf3-213ENST00000471978 AEBP1Q8IUX7 1158 aa30.72■■■□□ 2.51
C9orf3-213ENST00000471978 HSP90AB1P08238 724 aaKnown RBP30.71■■■□□ 2.51
C9orf3-213ENST00000471978 GOLGB1Q14789 3259 aaKnown RBP30.71■■■□□ 2.51
C9orf3-213ENST00000471978 ZNF530Q6P9A1 599 aaPredicted RBP30.7■■■□□ 2.51
C9orf3-213ENST00000471978 LINC00116Q8NCU8 138 aa30.7■■■□□ 2.51
C9orf3-213ENST00000471978 DCAF5Q96JK2 942 aa30.7■■■□□ 2.51
C9orf3-213ENST00000471978 ATG3Q9NT62 314 aa30.7■■■□□ 2.51
C9orf3-213ENST00000471978 ERVV-2B6SEH9 535 aa30.69■■■□□ 2.5
C9orf3-213ENST00000471978 SULT6B1Q6IMI4 303 aa30.69■■■□□ 2.5
C9orf3-213ENST00000471978 AMIGO3Q86WK7 504 aa30.69■■■□□ 2.5
C9orf3-213ENST00000471978 IL13P35225 146 aa30.68■■■□□ 2.5
C9orf3-213ENST00000471978 ATP6V1AP38606 617 aa30.68■■■□□ 2.5
C9orf3-213ENST00000471978 GPR162Q16538 588 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 196.3 ms