RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 PLEKHO1Q53GL0 409 aaPredicted RBP25.31■■□□□ 1.64
PSPC1-203ENST00000471658 QTRT2Q9H974 415 aaKnown RBP25.3■■□□□ 1.64
PSPC1-203ENST00000471658 TRPC5Q9UL62 973 aaPredicted RBP25.3■■□□□ 1.64
PSPC1-203ENST00000471658 THRAP3Q9Y2W1 955 aaKnown RBP25.3■■□□□ 1.64
PSPC1-203ENST00000471658 DISP2A7MBM2 1401 aa25.29■■□□□ 1.64
PSPC1-203ENST00000471658 ATRNO75882 1429 aa25.29■■□□□ 1.64
PSPC1-203ENST00000471658 OVOS2A0A0G2JMS6 1433 aa25.29■■□□□ 1.64
PSPC1-203ENST00000471658 FAM98CQ17RN3 349 aaKnown RBP25.28■■□□□ 1.64
PSPC1-203ENST00000471658 AMOTQ4VCS5 1084 aa25.28■■□□□ 1.64
PSPC1-203ENST00000471658 GAS2L2Q8NHY3 880 aa25.28■■□□□ 1.64
PSPC1-203ENST00000471658 GJD4Q96KN9 370 aaPredicted RBP25.28■■□□□ 1.64
PSPC1-203ENST00000471658 TRIM35Q9UPQ4 493 aa25.28■■□□□ 1.64
PSPC1-203ENST00000471658 ZNF530Q6P9A1 599 aaPredicted RBP25.27■■□□□ 1.64
PSPC1-203ENST00000471658 BARGINQ6ZT62 677 aa25.26■■□□□ 1.63
PSPC1-203ENST00000471658 ZCRB1Q8TBF4 217 aaKnown RBP25.26■■□□□ 1.63
PSPC1-203ENST00000471658 SPG7Q9UQ90 795 aa25.26■■□□□ 1.63
PSPC1-203ENST00000471658 DCTN1Q14203 1278 aa25.25■■□□□ 1.63
PSPC1-203ENST00000471658 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.25■■□□□ 1.636e-7■■■■□ 19.6
PSPC1-203ENST00000471658 GLI3P10071 1580 aa25.24■■□□□ 1.63
PSPC1-203ENST00000471658 WWC1Q8IX03 1113 aa25.24■■□□□ 1.63
PSPC1-203ENST00000471658 PHF23Q9BUL5 403 aaPredicted RBP25.24■■□□□ 1.63
PSPC1-203ENST00000471658 RGS17Q9UGC6 210 aaPredicted RBP25.24■■□□□ 1.63
PSPC1-203ENST00000471658 ZBED9Q6R2W3 1325 aa25.24■■□□□ 1.63
PSPC1-203ENST00000471658 PARP4Q9UKK3 1724 aaKnown RBP25.24■■□□□ 1.63
PSPC1-203ENST00000471658 CYP27B1O15528 508 aa25.23■■□□□ 1.63
PSPC1-203ENST00000471658 ZNF772Q68DY9 489 aaPredicted RBP25.23■■□□□ 1.63
PSPC1-203ENST00000471658 THUMPD2Q9BTF0 503 aaKnown RBP25.23■■□□□ 1.63
PSPC1-203ENST00000471658 DLG5Q8TDM6 1919 aa25.22■■□□□ 1.63
PSPC1-203ENST00000471658 CCDC27Q2M243 656 aa25.22■■□□□ 1.63
PSPC1-203ENST00000471658 DDX54Q8TDD1 881 aaKnown RBP25.22■■□□□ 1.63
PSPC1-203ENST00000471658 ZNF521Q96K83 1311 aa25.22■■□□□ 1.63
PSPC1-203ENST00000471658 WNK3Q9BYP7 1800 aa25.22■■□□□ 1.63
PSPC1-203ENST00000471658 GNAT3A8MTJ3 354 aa25.21■■□□□ 1.63
PSPC1-203ENST00000471658 AKAP4Q5JQC9 854 aa25.21■■□□□ 1.63
PSPC1-203ENST00000471658 MCM10Q7L590 875 aa25.21■■□□□ 1.63
PSPC1-203ENST00000471658 PKD1L3Q7Z443 1732 aa25.21■■□□□ 1.63
PSPC1-203ENST00000471658 CDCA7Q9BWT1 371 aaPredicted RBP25.21■■□□□ 1.63
PSPC1-203ENST00000471658 MAP3K5Q99683 1374 aa25.2■■□□□ 1.63
PSPC1-203ENST00000471658 EXOC5O00471 708 aa25.2■■□□□ 1.62
PSPC1-203ENST00000471658 PHKG2P15735 406 aa25.2■■□□□ 1.62
PSPC1-203ENST00000471658 NCBP3Q53F19 620 aaKnown RBP25.2■■□□□ 1.62
PSPC1-203ENST00000471658 C1orf141Q5JVX7 400 aa25.2■■□□□ 1.62
PSPC1-203ENST00000471658 NGEFQ8N5V2 710 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 PLEKHG2Q9H7P9 1386 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 MPRIPQ6WCQ1 1025 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 IFNL2Q8IZJ0 200 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 IL17REQ8NFR9 667 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 LGR6Q9HBX8 967 aa25.19■■□□□ 1.62
PSPC1-203ENST00000471658 A0A0G2JS52 829 aa25.18■■□□□ 1.62
PSPC1-203ENST00000471658 MYT1Q01538 1121 aa25.18■■□□□ 1.62
PSPC1-203ENST00000471658 DDB1Q16531 1140 aa25.18■■□□□ 1.62
PSPC1-203ENST00000471658 RTF1Q92541 710 aaKnown RBP25.18■■□□□ 1.62
PSPC1-203ENST00000471658 PCDH11XQ9BZA7 1347 aa25.17■■□□□ 1.62
PSPC1-203ENST00000471658 PCDH11YQ9BZA8 1340 aa25.17■■□□□ 1.62
PSPC1-203ENST00000471658 CDCA7LQ96GN5 454 aa25.17■■□□□ 1.62
PSPC1-203ENST00000471658 SHANK3Q9BYB0 1731 aa25.16■■□□□ 1.62
PSPC1-203ENST00000471658 LMOD3Q0VAK6 560 aa25.16■■□□□ 1.62
PSPC1-203ENST00000471658 SPINK5Q9NQ38 1064 aaPredicted RBP25.16■■□□□ 1.62
PSPC1-203ENST00000471658 HTATSF1O43719 755 aaKnown RBP25.15■■□□□ 1.62
PSPC1-203ENST00000471658 ONECUT3O60422 494 aaPredicted RBP25.15■■□□□ 1.62
PSPC1-203ENST00000471658 POTEAQ6S8J7 498 aa25.15■■□□□ 1.62
PSPC1-203ENST00000471658 TNS2Q63HR2 1409 aa25.14■■□□□ 1.61
PSPC1-203ENST00000471658 LRRC37A3O60309 1634 aa25.14■■□□□ 1.61
PSPC1-203ENST00000471658 RNMTO43148 476 aaKnown RBP25.13■■□□□ 1.61
PSPC1-203ENST00000471658 RBM6P78332 1123 aaKnown RBP25.13■■□□□ 1.61
PSPC1-203ENST00000471658 WDR63Q8IWG1 891 aa25.13■■□□□ 1.61
PSPC1-203ENST00000471658 SEPT12Q8IYM1 358 aa25.13■■□□□ 1.61
PSPC1-203ENST00000471658 GOLGA2Q08379 1002 aa25.12■■□□□ 1.61
PSPC1-203ENST00000471658 MARCH10Q8NA82 808 aaPredicted RBP25.12■■□□□ 1.61
PSPC1-203ENST00000471658 THSD7AQ9UPZ6 1657 aa25.12■■□□□ 1.61
PSPC1-203ENST00000471658 KDM6AO15550 1401 aaPredicted RBP25.11■■□□□ 1.61
PSPC1-203ENST00000471658 NKX1-1Q15270 411 aaPredicted RBP25.1■■□□□ 1.61
PSPC1-203ENST00000471658 CEMIPQ8WUJ3 1361 aa25.09■■□□□ 1.61
PSPC1-203ENST00000471658 RXRBP28702 533 aa25.09■■□□□ 1.61
PSPC1-203ENST00000471658 DCAF5Q96JK2 942 aa25.09■■□□□ 1.61
PSPC1-203ENST00000471658 LAS1LQ9Y4W2 734 aaKnown RBP25.09■■□□□ 1.61
PSPC1-203ENST00000471658 HSP90AB1P08238 724 aaKnown RBP25.08■■□□□ 1.61
PSPC1-203ENST00000471658 SLFN5Q08AF3 891 aa25.08■■□□□ 1.61
PSPC1-203ENST00000471658 PDE3BQ13370 1112 aa25.07■■□□□ 1.6
PSPC1-203ENST00000471658 MIS18AQ9NYP9 233 aa25.07■■□□□ 1.6
PSPC1-203ENST00000471658 FAM182BQ5T319 152 aa25.06■■□□□ 1.6
PSPC1-203ENST00000471658 IL16Q14005 1332 aa25.05■■□□□ 1.6
PSPC1-203ENST00000471658 TSR2Q969E8 191 aaKnown RBP25.04■■□□□ 1.6
PSPC1-203ENST00000471658 ADAMTS7Q9UKP4 1686 aa25.04■■□□□ 1.6
PSPC1-203ENST00000471658 E9PSI1 815 aa25.04■■□□□ 1.6
PSPC1-203ENST00000471658 ZNF853P0CG23 659 aa25.04■■□□□ 1.6
PSPC1-203ENST00000471658 CALD1Q05682 793 aaKnown RBP25.04■■□□□ 1.6
PSPC1-203ENST00000471658 TEFQ10587 303 aa25.04■■□□□ 1.6
PSPC1-203ENST00000471658 SCN11AQ9UI33 1791 aa25.03■■□□□ 1.6
PSPC1-203ENST00000471658 TRMT2AQ8IZ69 625 aaKnown RBP25.03■■□□□ 1.6
PSPC1-203ENST00000471658 NFATC2IPQ8NCF5 419 aa25.03■■□□□ 1.6
PSPC1-203ENST00000471658 VIRMAQ69YN4 1812 aaKnown RBP25.02■■□□□ 1.6
PSPC1-203ENST00000471658 TAF7Q15545 349 aaPredicted RBP25.02■■□□□ 1.6
PSPC1-203ENST00000471658 CFAP44Q96MT7 982 aa25.02■■□□□ 1.6
PSPC1-203ENST00000471658 SLC52A2Q9HAB3 445 aa25.02■■□□□ 1.6
PSPC1-203ENST00000471658 IFT57Q9NWB7 429 aa25.02■■□□□ 1.6
PSPC1-203ENST00000471658 GNAI1P63096 354 aa25.01■■□□□ 1.59
PSPC1-203ENST00000471658 DUSP27Q5VZP5 1158 aa25.01■■□□□ 1.59
PSPC1-203ENST00000471658 CHL1O00533 1208 aa25.01■■□□□ 1.59
PSPC1-203ENST00000471658 CABP4P57796 275 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms