RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 EMILIN1Q9Y6C2 1016 aa18.58■□□□□ 0.56
HMGN1-211ENST00000471260 RGPD2P0DJD1 1756 aa18.58■□□□□ 0.56
HMGN1-211ENST00000471260 STK32BQ9NY57 414 aa18.57■□□□□ 0.56
HMGN1-211ENST00000471260 MEGF6O75095 1541 aa18.57■□□□□ 0.56
HMGN1-211ENST00000471260 SLC15A2Q16348 729 aa18.56■□□□□ 0.56
HMGN1-211ENST00000471260 PANK3Q9H999 370 aa18.56■□□□□ 0.56
HMGN1-211ENST00000471260 SLC27A3Q5K4L6 730 aa18.55■□□□□ 0.56
HMGN1-211ENST00000471260 USHBP1Q8N6Y0 703 aa18.55■□□□□ 0.56
HMGN1-211ENST00000471260 POLKQ9UBT6 870 aa18.55■□□□□ 0.56
HMGN1-211ENST00000471260 BTAF1O14981 1849 aa18.55■□□□□ 0.56
HMGN1-211ENST00000471260 NSD2O96028 1365 aa18.55■□□□□ 0.56
HMGN1-211ENST00000471260 PPM1GO15355 546 aaPredicted RBP18.54■□□□□ 0.56
HMGN1-211ENST00000471260 ANKRD26Q9UPS8 1709 aa18.54■□□□□ 0.56
HMGN1-211ENST00000471260 PCDH11XQ9BZA7 1347 aa18.53■□□□□ 0.56
HMGN1-211ENST00000471260 PCDH11YQ9BZA8 1340 aa18.53■□□□□ 0.56
HMGN1-211ENST00000471260 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
HMGN1-211ENST00000471260 MAP2P11137 1827 aaKnown RBP18.53■□□□□ 0.56
HMGN1-211ENST00000471260 NCAPD2Q15021 1401 aa18.52■□□□□ 0.56
HMGN1-211ENST00000471260 SHANK3Q9BYB0 1731 aa18.52■□□□□ 0.55
HMGN1-211ENST00000471260 SYTL4Q96C24 671 aaPredicted RBP18.51■□□□□ 0.55
HMGN1-211ENST00000471260 HMGB2P26583 209 aaKnown RBP18.5■□□□□ 0.55
HMGN1-211ENST00000471260 EYA1Q99502 592 aa18.49■□□□□ 0.55
HMGN1-211ENST00000471260 LRRC4BQ9NT99 713 aa18.49■□□□□ 0.55
HMGN1-211ENST00000471260 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.49■□□□□ 0.55
HMGN1-211ENST00000471260 PPP1R1BQ9UD71 204 aaPredicted RBP18.49■□□□□ 0.55
HMGN1-211ENST00000471260 KNSTRNQ9Y448 316 aa18.49■□□□□ 0.55
HMGN1-211ENST00000471260 CASZ1Q86V15 1759 aa18.49■□□□□ 0.55
HMGN1-211ENST00000471260 PLEKHG2Q9H7P9 1386 aa18.48■□□□□ 0.55
HMGN1-211ENST00000471260 SPG7Q9UQ90 795 aa18.48■□□□□ 0.55
HMGN1-211ENST00000471260 PAPPAQ13219 1627 aa18.48■□□□□ 0.55
HMGN1-211ENST00000471260 DOT1LQ8TEK3 1739 aa18.47■□□□□ 0.55
HMGN1-211ENST00000471260 TNNT2P45379 298 aaPredicted RBP18.47■□□□□ 0.55
HMGN1-211ENST00000471260 CYP27B1O15528 508 aa18.46■□□□□ 0.55
HMGN1-211ENST00000471260 PDGFDQ9GZP0 370 aaPredicted RBP18.46■□□□□ 0.55
HMGN1-211ENST00000471260 MTFR1LQ9H019 292 aa18.46■□□□□ 0.55
HMGN1-211ENST00000471260 EIF4A2Q14240 407 aaKnown RBP18.45■□□□□ 0.54
HMGN1-211ENST00000471260 NKX1-1Q15270 411 aaPredicted RBP18.45■□□□□ 0.54
HMGN1-211ENST00000471260 MORC1Q86VD1 984 aa18.45■□□□□ 0.54
HMGN1-211ENST00000471260 AKT1S1Q96B36 256 aa18.45■□□□□ 0.54
HMGN1-211ENST00000471260 KIF7Q2M1P5 1343 aa18.45■□□□□ 0.54
HMGN1-211ENST00000471260 PKD1L3Q7Z443 1732 aa18.44■□□□□ 0.54
HMGN1-211ENST00000471260 ZBTB7AO95365 584 aa18.44■□□□□ 0.54
HMGN1-211ENST00000471260 PTGER2P43116 358 aa18.43■□□□□ 0.54
HMGN1-211ENST00000471260 SLC16A10Q8TF71 515 aa18.43■□□□□ 0.54
HMGN1-211ENST00000471260 LY75O60449 1722 aa18.43■□□□□ 0.54
HMGN1-211ENST00000471260 ZNF827Q17R98 1081 aa18.42■□□□□ 0.54
HMGN1-211ENST00000471260 CCNL1Q9UK58 526 aaPredicted RBP18.42■□□□□ 0.54
HMGN1-211ENST00000471260 IGSF1Q8N6C5 1336 aa18.42■□□□□ 0.54
HMGN1-211ENST00000471260 AMER1Q5JTC6 1135 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-211ENST00000471260 IFNL2Q8IZJ0 200 aa18.41■□□□□ 0.54
HMGN1-211ENST00000471260 SMARCC1Q92922 1105 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-211ENST00000471260 ATF5Q9Y2D1 282 aaPredicted RBP18.41■□□□□ 0.54
HMGN1-211ENST00000471260 MPRIPQ6WCQ1 1025 aa18.4■□□□□ 0.54
HMGN1-211ENST00000471260 TFCP2L1Q9NZI6 479 aa18.4■□□□□ 0.54
HMGN1-211ENST00000471260 SGIP1Q9BQI5 828 aa18.39■□□□□ 0.53
HMGN1-211ENST00000471260 QSER1Q2KHR3 1735 aa18.39■□□□□ 0.53
HMGN1-211ENST00000471260 DCAF8L1A6NGE4 600 aa18.38■□□□□ 0.53
HMGN1-211ENST00000471260 PER1O15534 1290 aaPredicted RBP18.38■□□□□ 0.53
HMGN1-211ENST00000471260 PHKG2P15735 406 aa18.38■□□□□ 0.53
HMGN1-211ENST00000471260 KCNQ4P56696 695 aa18.37■□□□□ 0.53
HMGN1-211ENST00000471260 PNPLA7Q6ZV29 1317 aa18.37■□□□□ 0.53
HMGN1-211ENST00000471260 PALLDQ8WX93 1383 aa18.37■□□□□ 0.53
HMGN1-211ENST00000471260 AMOTQ4VCS5 1084 aa18.36■□□□□ 0.53
HMGN1-211ENST00000471260 PLEKHO1Q53GL0 409 aaPredicted RBP18.36■□□□□ 0.53
HMGN1-211ENST00000471260 PIGBQ92521 554 aa18.36■□□□□ 0.53
HMGN1-211ENST00000471260 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
HMGN1-211ENST00000471260 ITGB4P16144 1822 aa18.35■□□□□ 0.53
HMGN1-211ENST00000471260 ARXQ96QS3 562 aa18.34■□□□□ 0.53
HMGN1-211ENST00000471260 TMOD3Q9NYL9 352 aa18.34■□□□□ 0.53
HMGN1-211ENST00000471260 TOGARAM1Q9Y4F4 1720 aa18.34■□□□□ 0.53
HMGN1-211ENST00000471260 NPC1L1Q9UHC9 1359 aa18.33■□□□□ 0.53
HMGN1-211ENST00000471260 IL13P35225 146 aa18.33■□□□□ 0.52
HMGN1-211ENST00000471260 FLAD1Q8NFF5 587 aa18.33■□□□□ 0.52
HMGN1-211ENST00000471260 ERVV-2B6SEH9 535 aa18.32■□□□□ 0.52
HMGN1-211ENST00000471260 POLD1P28340 1107 aa18.32■□□□□ 0.52
HMGN1-211ENST00000471260 DCAF5Q96JK2 942 aa18.32■□□□□ 0.52
HMGN1-211ENST00000471260 SYT17Q9BSW7 474 aa18.32■□□□□ 0.52
HMGN1-211ENST00000471260 KDRP35968 1356 aa18.31■□□□□ 0.52
HMGN1-211ENST00000471260 MAP3K5Q99683 1374 aa18.31■□□□□ 0.52
HMGN1-211ENST00000471260 MTHFSP49914 203 aa18.31■□□□□ 0.52
HMGN1-211ENST00000471260 FHDC1Q9C0D6 1143 aaPredicted RBP18.31■□□□□ 0.52
HMGN1-211ENST00000471260 LOC102724428A0A0B4J2F2 783 aa18.3■□□□□ 0.52
HMGN1-211ENST00000471260 SIK1P57059 783 aa18.3■□□□□ 0.52
HMGN1-211ENST00000471260 SULT6B1Q6IMI4 303 aa18.3■□□□□ 0.52
HMGN1-211ENST00000471260 C5P01031 1676 aa18.3■□□□□ 0.52
HMGN1-211ENST00000471260 COL24A1Q17RW2 1714 aa18.29■□□□□ 0.52
HMGN1-211ENST00000471260 TUBGCP6Q96RT7 1819 aa18.29■□□□□ 0.52
HMGN1-211ENST00000471260 COL23A1Q86Y22 540 aaPredicted RBP18.29■□□□□ 0.52
HMGN1-211ENST00000471260 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
HMGN1-211ENST00000471260 CC2D1BQ5T0F9 858 aaKnown RBP18.28■□□□□ 0.52
HMGN1-211ENST00000471260 ZNF530Q6P9A1 599 aaPredicted RBP18.28■□□□□ 0.52
HMGN1-211ENST00000471260 ASAP1Q9ULH1 1129 aa18.28■□□□□ 0.52
HMGN1-211ENST00000471260 TAF1LQ8IZX4 1826 aa18.28■□□□□ 0.52
HMGN1-211ENST00000471260 AEBP1Q8IUX7 1158 aa18.27■□□□□ 0.52
HMGN1-211ENST00000471260 AK7Q96M32 723 aa18.27■□□□□ 0.52
HMGN1-211ENST00000471260 MSH5O43196 834 aa18.26■□□□□ 0.51
HMGN1-211ENST00000471260 ATG3Q9NT62 314 aa18.26■□□□□ 0.51
HMGN1-211ENST00000471260 DIAPH1O60610 1272 aaKnown RBP18.25■□□□□ 0.51
HMGN1-211ENST00000471260 ATP6V1AP38606 617 aa18.25■□□□□ 0.51
HMGN1-211ENST00000471260 C4BP0C0L5 1744 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms