RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 INSRP06213 1382 aa24.31■■□□□ 1.48
COL7A1-208ENST00000470076 SLC27A3Q5K4L6 730 aa24.31■■□□□ 1.48
COL7A1-208ENST00000470076 DOT1LQ8TEK3 1739 aa24.31■■□□□ 1.48
COL7A1-208ENST00000470076 MTFR1LQ9H019 292 aa24.31■■□□□ 1.48
COL7A1-208ENST00000470076 ATF5Q9Y2D1 282 aaPredicted RBP24.31■■□□□ 1.48
COL7A1-208ENST00000470076 FLT4P35916 1363 aa24.3■■□□□ 1.48
COL7A1-208ENST00000470076 SYTL4Q96C24 671 aaPredicted RBP24.3■■□□□ 1.48
COL7A1-208ENST00000470076 CARD14Q9BXL6 1004 aa24.3■■□□□ 1.48
COL7A1-208ENST00000470076 LRRC4BQ9NT99 713 aa24.3■■□□□ 1.48
COL7A1-208ENST00000470076 NSD3Q9BZ95 1437 aa24.29■■□□□ 1.48
COL7A1-208ENST00000470076 PRIM1P49642 420 aaKnown RBP24.29■■□□□ 1.48
COL7A1-208ENST00000470076 HSP90AB2PQ58FF8 381 aa24.29■■□□□ 1.48
COL7A1-208ENST00000470076 RAPGEF4Q8WZA2 1011 aa24.29■■□□□ 1.48
COL7A1-208ENST00000470076 USHBP1Q8N6Y0 703 aa24.27■■□□□ 1.48
COL7A1-208ENST00000470076 TATP17735 454 aaPredicted RBP24.26■■□□□ 1.47
COL7A1-208ENST00000470076 ZNF827Q17R98 1081 aa24.26■■□□□ 1.47
COL7A1-208ENST00000470076 NSD2O96028 1365 aa24.25■■□□□ 1.47
COL7A1-208ENST00000470076 LY75O60449 1722 aa24.24■■□□□ 1.47
COL7A1-208ENST00000470076 QSER1Q2KHR3 1735 aa24.24■■□□□ 1.47
COL7A1-208ENST00000470076 AKT1S1Q96B36 256 aa24.24■■□□□ 1.47
COL7A1-208ENST00000470076 SGIP1Q9BQI5 828 aa24.24■■□□□ 1.47
COL7A1-208ENST00000470076 EMILIN1Q9Y6C2 1016 aa24.22■■□□□ 1.47
COL7A1-208ENST00000470076 PCDH11XQ9BZA7 1347 aa24.21■■□□□ 1.47
COL7A1-208ENST00000470076 PCDH11YQ9BZA8 1340 aa24.21■■□□□ 1.47
COL7A1-208ENST00000470076 YY1P25490 414 aa24.21■■□□□ 1.47
COL7A1-208ENST00000470076 ANKRD26Q9UPS8 1709 aa24.21■■□□□ 1.47
COL7A1-208ENST00000470076 SLC16A10Q8TF71 515 aa24.2■■□□□ 1.46
COL7A1-208ENST00000470076 FHDC1Q9C0D6 1143 aaPredicted RBP24.2■■□□□ 1.46
COL7A1-208ENST00000470076 SYT17Q9BSW7 474 aa24.19■■□□□ 1.46
COL7A1-208ENST00000470076 MAP2P11137 1827 aaKnown RBP24.19■■□□□ 1.46
COL7A1-208ENST00000470076 ARXQ96QS3 562 aa24.18■■□□□ 1.46
COL7A1-208ENST00000470076 PPM1GO15355 546 aaPredicted RBP24.17■■□□□ 1.46
COL7A1-208ENST00000470076 KCNQ4P56696 695 aa24.17■■□□□ 1.46
COL7A1-208ENST00000470076 TFCP2L1Q9NZI6 479 aa24.17■■□□□ 1.46
COL7A1-208ENST00000470076 CCNL1Q9UK58 526 aaPredicted RBP24.17■■□□□ 1.46
COL7A1-208ENST00000470076 WASHC2AQ641Q2 1341 aa24.16■■□□□ 1.46
COL7A1-208ENST00000470076 PNPLA7Q6ZV29 1317 aa24.16■■□□□ 1.46
COL7A1-208ENST00000470076 EIF4G2P78344 907 aaKnown RBP eCLIP24.16■■□□□ 1.46
COL7A1-208ENST00000470076 POLR3GLQ9BT43 218 aa24.16■■□□□ 1.46
COL7A1-208ENST00000470076 TUBGCP6Q96RT7 1819 aa24.16■■□□□ 1.46
COL7A1-208ENST00000470076 NCAPD2Q15021 1401 aa24.16■■□□□ 1.46
COL7A1-208ENST00000470076 PKD1L3Q7Z443 1732 aa24.15■■□□□ 1.46
COL7A1-208ENST00000470076 MAP3K5Q99683 1374 aa24.15■■□□□ 1.46
COL7A1-208ENST00000470076 CYP27B1O15528 508 aa24.14■■□□□ 1.45
COL7A1-208ENST00000470076 COL24A1Q17RW2 1714 aa24.13■■□□□ 1.45
COL7A1-208ENST00000470076 HMGB2P26583 209 aaKnown RBP24.12■■□□□ 1.45
COL7A1-208ENST00000470076 POLKQ9UBT6 870 aa24.12■■□□□ 1.45
COL7A1-208ENST00000470076 HSPA5P11021 654 aaKnown RBP24.11■■□□□ 1.45
COL7A1-208ENST00000470076 POLD1P28340 1107 aa24.11■■□□□ 1.45
COL7A1-208ENST00000470076 CCER1Q8TC90 406 aaPredicted RBP24.11■■□□□ 1.45
COL7A1-208ENST00000470076 MPRIPQ6WCQ1 1025 aa24.1■■□□□ 1.45
COL7A1-208ENST00000470076 SPG7Q9UQ90 795 aa24.1■■□□□ 1.45
COL7A1-208ENST00000470076 ITGB4P16144 1822 aa24.1■■□□□ 1.45
COL7A1-208ENST00000470076 EYA1Q99502 592 aa24.09■■□□□ 1.45
COL7A1-208ENST00000470076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.09■■□□□ 1.45
COL7A1-208ENST00000470076 TOGARAM1Q9Y4F4 1720 aa24.09■■□□□ 1.45
COL7A1-208ENST00000470076 C5P01031 1676 aa24.08■■□□□ 1.45
COL7A1-208ENST00000470076 UTRNP46939 3433 aa24.08■■□□□ 1.45
COL7A1-208ENST00000470076 PALLDQ8WX93 1383 aa24.08■■□□□ 1.45
COL7A1-208ENST00000470076 NKX1-1Q15270 411 aaPredicted RBP24.07■■□□□ 1.44
COL7A1-208ENST00000470076 SMARCC1Q92922 1105 aaPredicted RBP24.07■■□□□ 1.44
COL7A1-208ENST00000470076 TAF1LQ8IZX4 1826 aa24.06■■□□□ 1.44
COL7A1-208ENST00000470076 TNNT2P45379 298 aaPredicted RBP24.05■■□□□ 1.44
COL7A1-208ENST00000470076 PANK3Q9H999 370 aa24.05■■□□□ 1.44
COL7A1-208ENST00000470076 COL23A1Q86Y22 540 aaPredicted RBP24.04■■□□□ 1.44
COL7A1-208ENST00000470076 PLEKHG2Q9H7P9 1386 aa24.03■■□□□ 1.44
COL7A1-208ENST00000470076 MSH5O43196 834 aa24.03■■□□□ 1.44
COL7A1-208ENST00000470076 EIF4A2Q14240 407 aaKnown RBP24.03■■□□□ 1.44
COL7A1-208ENST00000470076 CHD4Q14839 1912 aa24.03■■□□□ 1.44
COL7A1-208ENST00000470076 KLHL34Q8N239 644 aa24.02■■□□□ 1.44
COL7A1-208ENST00000470076 FLAD1Q8NFF5 587 aa24.02■■□□□ 1.44
COL7A1-208ENST00000470076 PIGBQ92521 554 aa24.02■■□□□ 1.44
COL7A1-208ENST00000470076 IFNL2Q8IZJ0 200 aa24.01■■□□□ 1.43
COL7A1-208ENST00000470076 C4BP0C0L5 1744 aa23.99■■□□□ 1.43
COL7A1-208ENST00000470076 PHKG2P15735 406 aa23.99■■□□□ 1.43
COL7A1-208ENST00000470076 TMOD3Q9NYL9 352 aa23.98■■□□□ 1.43
COL7A1-208ENST00000470076 IGSF1Q8N6C5 1336 aa23.98■■□□□ 1.43
COL7A1-208ENST00000470076 GPR162Q16538 588 aa23.97■■□□□ 1.43
COL7A1-208ENST00000470076 AK7Q96M32 723 aa23.96■■□□□ 1.43
COL7A1-208ENST00000470076 MORC1Q86VD1 984 aa23.95■■□□□ 1.42
COL7A1-208ENST00000470076 GOLGB1Q14789 3259 aaKnown RBP23.94■■□□□ 1.42
COL7A1-208ENST00000470076 LOC102724428A0A0B4J2F2 783 aa23.94■■□□□ 1.42
COL7A1-208ENST00000470076 SIK1P57059 783 aa23.94■■□□□ 1.42
COL7A1-208ENST00000470076 MSL1Q68DK7 614 aa23.94■■□□□ 1.42
COL7A1-208ENST00000470076 KNSTRNQ9Y448 316 aa23.94■■□□□ 1.42
COL7A1-208ENST00000470076 UBR3Q6ZT12 1888 aa23.94■■□□□ 1.42
COL7A1-208ENST00000470076 NLGN2Q8NFZ4 835 aa23.93■■□□□ 1.42
COL7A1-208ENST00000470076 ZNF784Q8NCA9 323 aaPredicted RBP23.92■■□□□ 1.42
COL7A1-208ENST00000470076 ASAP1Q9ULH1 1129 aa23.92■■□□□ 1.42
COL7A1-208ENST00000470076 HSP90AB1P08238 724 aaKnown RBP23.91■■□□□ 1.42
COL7A1-208ENST00000470076 PLEKHO1Q53GL0 409 aaPredicted RBP23.91■■□□□ 1.42
COL7A1-208ENST00000470076 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
COL7A1-208ENST00000470076 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.89■■□□□ 1.41
COL7A1-208ENST00000470076 ERVV-2B6SEH9 535 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 SSFA2P28290 1259 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 AMOTQ4VCS5 1084 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 LINC00116Q8NCU8 138 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 DCAF5Q96JK2 942 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 ATG3Q9NT62 314 aa23.89■■□□□ 1.41
COL7A1-208ENST00000470076 ATP6V1AP38606 617 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms