RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 CARD14Q9BXL6 1004 aa29.33■■■□□ 2.29
SHANK1-206ENST00000468654 PKD1L3Q7Z443 1732 aa29.32■■■□□ 2.28
SHANK1-206ENST00000468654 TOGARAM1Q9Y4F4 1720 aa29.32■■■□□ 2.28
SHANK1-206ENST00000468654 ITGB4P16144 1822 aa29.31■■■□□ 2.28
SHANK1-206ENST00000468654 TAF1LQ8IZX4 1826 aa29.31■■■□□ 2.28
SHANK1-206ENST00000468654 SMG6Q86US8 1419 aaKnown RBP29.31■■■□□ 2.28
SHANK1-206ENST00000468654 KIF24Q5T7B8 1368 aa29.31■■■□□ 2.28
SHANK1-206ENST00000468654 MAP2P11137 1827 aaKnown RBP29.3■■■□□ 2.28
SHANK1-206ENST00000468654 FLT4P35916 1363 aa29.29■■■□□ 2.28
SHANK1-206ENST00000468654 C5P01031 1676 aa29.29■■■□□ 2.28
SHANK1-206ENST00000468654 NSD2O96028 1365 aa29.28■■■□□ 2.28
SHANK1-206ENST00000468654 INSRP06213 1382 aa29.28■■■□□ 2.28
SHANK1-206ENST00000468654 ZNF827Q17R98 1081 aa29.27■■■□□ 2.28
SHANK1-206ENST00000468654 NBPF6Q5VWK0 638 aa29.27■■■□□ 2.28
SHANK1-206ENST00000468654 DDX54Q8TDD1 881 aaKnown RBP29.27■■■□□ 2.28
SHANK1-206ENST00000468654 NBPF4Q96M43 638 aa29.27■■■□□ 2.28
SHANK1-206ENST00000468654 ATF5Q9Y2D1 282 aaPredicted RBP29.27■■■□□ 2.28
SHANK1-206ENST00000468654 LRRC4BQ9NT99 713 aa29.26■■■□□ 2.27
SHANK1-206ENST00000468654 UTRNP46939 3433 aa29.26■■■□□ 2.27
SHANK1-206ENST00000468654 HSP90AB2PQ58FF8 381 aa29.24■■■□□ 2.27
SHANK1-206ENST00000468654 CCER1Q8TC90 406 aaPredicted RBP29.24■■■□□ 2.27
SHANK1-206ENST00000468654 SGIP1Q9BQI5 828 aa29.24■■■□□ 2.27
SHANK1-206ENST00000468654 MTFR1LQ9H019 292 aa29.24■■■□□ 2.27
SHANK1-206ENST00000468654 ZCRB1Q8TBF4 217 aaKnown RBP29.23■■■□□ 2.27
SHANK1-206ENST00000468654 CGNL1Q0VF96 1302 aa29.22■■■□□ 2.27
SHANK1-206ENST00000468654 YY1P25490 414 aa29.22■■■□□ 2.27
SHANK1-206ENST00000468654 USHBP1Q8N6Y0 703 aa29.22■■■□□ 2.27
SHANK1-206ENST00000468654 EIF4G2P78344 907 aaKnown RBP eCLIP29.2■■■□□ 2.26
SHANK1-206ENST00000468654 EMILIN1Q9Y6C2 1016 aa29.2■■■□□ 2.26
SHANK1-206ENST00000468654 HSPA5P11021 654 aaKnown RBP29.19■■■□□ 2.26
SHANK1-206ENST00000468654 RAPGEF4Q8WZA2 1011 aa29.18■■■□□ 2.26
SHANK1-206ENST00000468654 AKT1S1Q96B36 256 aa29.17■■■□□ 2.26
SHANK1-206ENST00000468654 FHDC1Q9C0D6 1143 aaPredicted RBP29.17■■■□□ 2.26
SHANK1-206ENST00000468654 POLR3GLQ9BT43 218 aa29.16■■■□□ 2.26
SHANK1-206ENST00000468654 NCAPD2Q15021 1401 aa29.16■■■□□ 2.26
SHANK1-206ENST00000468654 TATP17735 454 aaPredicted RBP29.15■■■□□ 2.26
SHANK1-206ENST00000468654 PRIM1P49642 420 aaKnown RBP29.15■■■□□ 2.26
SHANK1-206ENST00000468654 SLC27A3Q5K4L6 730 aa29.15■■■□□ 2.26
SHANK1-206ENST00000468654 SYTL4Q96C24 671 aaPredicted RBP29.15■■■□□ 2.26
SHANK1-206ENST00000468654 MAP3K5Q99683 1374 aa29.13■■■□□ 2.25
SHANK1-206ENST00000468654 DCAF8L1A6NGE4 600 aa29.12■■■□□ 2.25
SHANK1-206ENST00000468654 KCNQ4P56696 695 aa29.12■■■□□ 2.25
SHANK1-206ENST00000468654 SYT17Q9BSW7 474 aa29.12■■■□□ 2.25
SHANK1-206ENST00000468654 PNPLA7Q6ZV29 1317 aa29.12■■■□□ 2.25
SHANK1-206ENST00000468654 UBR3Q6ZT12 1888 aa29.12■■■□□ 2.25
SHANK1-206ENST00000468654 PCDH11XQ9BZA7 1347 aa29.11■■■□□ 2.25
SHANK1-206ENST00000468654 PCDH11YQ9BZA8 1340 aa29.11■■■□□ 2.25
SHANK1-206ENST00000468654 GOLGB1Q14789 3259 aaKnown RBP29.1■■■□□ 2.25
SHANK1-206ENST00000468654 WASHC2AQ641Q2 1341 aa29.1■■■□□ 2.25
SHANK1-206ENST00000468654 PPM1GO15355 546 aaPredicted RBP29.09■■■□□ 2.25
SHANK1-206ENST00000468654 C4BP0C0L5 1744 aa29.08■■■□□ 2.25
SHANK1-206ENST00000468654 ARXQ96QS3 562 aa29.08■■■□□ 2.25
SHANK1-206ENST00000468654 POLKQ9UBT6 870 aa29.07■■■□□ 2.24
SHANK1-206ENST00000468654 PANK3Q9H999 370 aa29.04■■■□□ 2.24
SHANK1-206ENST00000468654 CYP27B1O15528 508 aa29.03■■■□□ 2.24
SHANK1-206ENST00000468654 CCNL1Q9UK58 526 aaPredicted RBP29.03■■■□□ 2.24
SHANK1-206ENST00000468654 SLC16A10Q8TF71 515 aa29.01■■■□□ 2.23
SHANK1-206ENST00000468654 EYA1Q99502 592 aa29.01■■■□□ 2.23
SHANK1-206ENST00000468654 TFCP2L1Q9NZI6 479 aa29.01■■■□□ 2.23
SHANK1-206ENST00000468654 TNNT2P45379 298 aaPredicted RBP28.99■■■□□ 2.23
SHANK1-206ENST00000468654 PALLDQ8WX93 1383 aa28.98■■■□□ 2.23
SHANK1-206ENST00000468654 EIF4A2Q14240 407 aaKnown RBP28.97■■■□□ 2.23
SHANK1-206ENST00000468654 SPG7Q9UQ90 795 aa28.96■■■□□ 2.23
SHANK1-206ENST00000468654 PLEKHG2Q9H7P9 1386 aa28.96■■■□□ 2.23
SHANK1-206ENST00000468654 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.95■■■□□ 2.22
SHANK1-206ENST00000468654 POLD1P28340 1107 aa28.94■■■□□ 2.22
SHANK1-206ENST00000468654 NKX1-1Q15270 411 aaPredicted RBP28.94■■■□□ 2.22
SHANK1-206ENST00000468654 VIRMAQ69YN4 1812 aaKnown RBP28.94■■■□□ 2.22
SHANK1-206ENST00000468654 COL5A3P25940 1745 aaPredicted RBP28.92■■■□□ 2.22
SHANK1-206ENST00000468654 MPRIPQ6WCQ1 1025 aa28.92■■■□□ 2.22
SHANK1-206ENST00000468654 KLHL34Q8N239 644 aa28.92■■■□□ 2.22
SHANK1-206ENST00000468654 IGSF1Q8N6C5 1336 aa28.92■■■□□ 2.22
SHANK1-206ENST00000468654 COL23A1Q86Y22 540 aaPredicted RBP28.9■■■□□ 2.22
SHANK1-206ENST00000468654 ZNF831Q5JPB2 1677 aa28.89■■■□□ 2.22
SHANK1-206ENST00000468654 ZNF784Q8NCA9 323 aaPredicted RBP28.89■■■□□ 2.22
SHANK1-206ENST00000468654 MORC1Q86VD1 984 aa28.88■■■□□ 2.21
SHANK1-206ENST00000468654 NLGN2Q8NFZ4 835 aa28.88■■■□□ 2.21
SHANK1-206ENST00000468654 KIF7Q2M1P5 1343 aa28.88■■■□□ 2.21
SHANK1-206ENST00000468654 SMARCC1Q92922 1105 aaPredicted RBP28.87■■■□□ 2.21
SHANK1-206ENST00000468654 KNSTRNQ9Y448 316 aa28.87■■■□□ 2.21
SHANK1-206ENST00000468654 PHKG2P15735 406 aa28.86■■■□□ 2.21
SHANK1-206ENST00000468654 IFNL2Q8IZJ0 200 aa28.86■■■□□ 2.21
SHANK1-206ENST00000468654 PIGBQ92521 554 aa28.86■■■□□ 2.21
SHANK1-206ENST00000468654 HMGB2P26583 209 aaKnown RBP28.85■■■□□ 2.21
SHANK1-206ENST00000468654 MSL1Q68DK7 614 aa28.85■■■□□ 2.21
SHANK1-206ENST00000468654 MSH5O43196 834 aa28.84■■■□□ 2.21
SHANK1-206ENST00000468654 C4AP0C0L4 1744 aa28.83■■■□□ 2.21
SHANK1-206ENST00000468654 GPR162Q16538 588 aa28.82■■■□□ 2.2
SHANK1-206ENST00000468654 AMER1Q5JTC6 1135 aaPredicted RBP28.82■■■□□ 2.2
SHANK1-206ENST00000468654 AMIGO3Q86WK7 504 aa28.82■■■□□ 2.2
SHANK1-206ENST00000468654 KIF13BQ9NQT8 1826 aa28.82■■■□□ 2.2
SHANK1-206ENST00000468654 SCN11AQ9UI33 1791 aa28.81■■■□□ 2.2
SHANK1-206ENST00000468654 TMOD3Q9NYL9 352 aa28.81■■■□□ 2.2
SHANK1-206ENST00000468654 KIAA1551Q9HCM1 1747 aa28.8■■■□□ 2.2
SHANK1-206ENST00000468654 MYH14Q7Z406 1995 aaKnown RBP28.79■■■□□ 2.2
SHANK1-206ENST00000468654 PELP1Q8IZL8 1130 aaKnown RBP28.77■■■□□ 2.2
SHANK1-206ENST00000468654 KDRP35968 1356 aa28.76■■■□□ 2.2
SHANK1-206ENST00000468654 CICQ96RK0 1608 aaPredicted RBP28.76■■■□□ 2.2
SHANK1-206ENST00000468654 LOC102724428A0A0B4J2F2 783 aa28.76■■■□□ 2.19
SHANK1-206ENST00000468654 SIK1P57059 783 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms