RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 NLRP2Q9NX02 1062 aa24.47■■□□□ 1.51
SMC4-209ENST00000468653 PLEKHO1Q53GL0 409 aaPredicted RBP24.47■■□□□ 1.51
SMC4-209ENST00000468653 MAP3K5Q99683 1374 aa24.46■■□□□ 1.51
SMC4-209ENST00000468653 CRBNQ96SW2 442 aa24.46■■□□□ 1.51
SMC4-209ENST00000468653 BCL2L13Q9BXK5 485 aa24.46■■□□□ 1.51
SMC4-209ENST00000468653 B4GALNT3Q6L9W6 998 aa24.45■■□□□ 1.5
SMC4-209ENST00000468653 AEBP2Q6ZN18 517 aaPredicted RBP24.45■■□□□ 1.5
SMC4-209ENST00000468653 AMOTQ4VCS5 1084 aa24.44■■□□□ 1.5
SMC4-209ENST00000468653 FRAT1Q92837 279 aaPredicted RBP24.44■■□□□ 1.5
SMC4-209ENST00000468653 CAMTA1Q9Y6Y1 1673 aa24.44■■□□□ 1.5
SMC4-209ENST00000468653 CHL1O00533 1208 aa24.44■■□□□ 1.5
SMC4-209ENST00000468653 PELP1Q8IZL8 1130 aaKnown RBP24.44■■□□□ 1.5
SMC4-209ENST00000468653 CRB1P82279 1406 aa24.44■■□□□ 1.5
SMC4-209ENST00000468653 SMC4Q9NTJ3 1288 aa24.43■■□□□ 1.5
SMC4-209ENST00000468653 AHDC1Q5TGY3 1603 aaPredicted RBP24.43■■□□□ 1.5
SMC4-209ENST00000468653 TOM1O60784 492 aa24.42■■□□□ 1.5
SMC4-209ENST00000468653 ZNF428Q96B54 188 aa24.42■■□□□ 1.5
SMC4-209ENST00000468653 CCDC136Q96JN2 1154 aa24.42■■□□□ 1.5
SMC4-209ENST00000468653 ZNF530Q6P9A1 599 aaPredicted RBP24.41■■□□□ 1.5
SMC4-209ENST00000468653 RAPGEF4Q8WZA2 1011 aa24.41■■□□□ 1.5
SMC4-209ENST00000468653 ABCA3Q99758 1704 aa24.4■■□□□ 1.5
SMC4-209ENST00000468653 PDE3AQ14432 1141 aa24.4■■□□□ 1.5
SMC4-209ENST00000468653 SSH1Q8WYL5 1049 aa24.4■■□□□ 1.5
SMC4-209ENST00000468653 LMO7Q8WWI1 1683 aa24.4■■□□□ 1.5
SMC4-209ENST00000468653 IL17REQ8NFR9 667 aa24.39■■□□□ 1.5
SMC4-209ENST00000468653 VAMP4O75379 141 aa24.39■■□□□ 1.49
SMC4-209ENST00000468653 TWISTNBQ3B726 338 aaPredicted RBP24.39■■□□□ 1.49
SMC4-209ENST00000468653 ALDH1L2Q3SY69 923 aa24.39■■□□□ 1.49
SMC4-209ENST00000468653 TSPYL6Q8N831 410 aa24.39■■□□□ 1.49
SMC4-209ENST00000468653 FAM208AQ9UK61 1670 aaKnown RBP24.38■■□□□ 1.49
SMC4-209ENST00000468653 ELL2O00472 640 aaPredicted RBP24.38■■□□□ 1.49
SMC4-209ENST00000468653 AKAP4Q5JQC9 854 aa24.38■■□□□ 1.49
SMC4-209ENST00000468653 C1orf141Q5JVX7 400 aa24.38■■□□□ 1.49
SMC4-209ENST00000468653 C8orf58Q8NAV2 365 aa24.37■■□□□ 1.49
SMC4-209ENST00000468653 TSPYL4Q9UJ04 414 aa24.37■■□□□ 1.49
SMC4-209ENST00000468653 TATP17735 454 aaPredicted RBP24.37■■□□□ 1.49
SMC4-209ENST00000468653 PIP4K2BP78356 416 aa24.37■■□□□ 1.49
SMC4-209ENST00000468653 ZKSCAN2Q63HK3 967 aa24.36■■□□□ 1.49
SMC4-209ENST00000468653 MIS18AQ9NYP9 233 aa24.36■■□□□ 1.49
SMC4-209ENST00000468653 WDR17Q8IZU2 1322 aa24.34■■□□□ 1.49
SMC4-209ENST00000468653 TAF7Q15545 349 aaPredicted RBP24.34■■□□□ 1.49
SMC4-209ENST00000468653 PANK1Q8TE04 598 aa24.34■■□□□ 1.49
SMC4-209ENST00000468653 LRRC37A3O60309 1634 aa24.34■■□□□ 1.49
SMC4-209ENST00000468653 KIF16BQ96L93 1317 aa24.33■■□□□ 1.49
SMC4-209ENST00000468653 TOM1L2Q6ZVM7 507 aa24.33■■□□□ 1.49
SMC4-209ENST00000468653 EVA1CP58658 441 aa24.32■■□□□ 1.48
SMC4-209ENST00000468653 COL5A2P05997 1499 aaPredicted RBP24.31■■□□□ 1.48
SMC4-209ENST00000468653 UBAP1LF5GYI3 381 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 IPO8O15397 1037 aaKnown RBP24.31■■□□□ 1.48
SMC4-209ENST00000468653 MS4A1P11836 297 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 LGR6Q9HBX8 967 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 BABAM1Q9NWV8 329 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 NOB1Q9ULX3 412 aaKnown RBP24.31■■□□□ 1.48
SMC4-209ENST00000468653 SPG7Q9UQ90 795 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 CEMIPQ8WUJ3 1361 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 PHLPP1O60346 1717 aa24.31■■□□□ 1.48
SMC4-209ENST00000468653 KRT24Q2M2I5 525 aa24.3■■□□□ 1.48
SMC4-209ENST00000468653 MPRIPQ6WCQ1 1025 aa24.3■■□□□ 1.48
SMC4-209ENST00000468653 STRN4Q9NRL3 753 aa24.3■■□□□ 1.48
SMC4-209ENST00000468653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.3■■□□□ 1.481e-7■■■■■ 35.1
SMC4-209ENST00000468653 COG6Q9Y2V7 657 aa24.3■■□□□ 1.48
SMC4-209ENST00000468653 BRPF1P55201 1214 aaPredicted RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 FTSJ3Q8IY81 847 aaKnown RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 CLUAP1Q96AJ1 413 aa24.29■■□□□ 1.48
SMC4-209ENST00000468653 MEGF6O75095 1541 aa24.29■■□□□ 1.48
SMC4-209ENST00000468653 RNMTO43148 476 aaKnown RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 TEFQ10587 303 aa24.29■■□□□ 1.48
SMC4-209ENST00000468653 DZIP1LQ8IYY4 767 aaKnown RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 MRPL50Q8N5N7 158 aaKnown RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 TNNQ9UQP3 1299 aa24.29■■□□□ 1.48
SMC4-209ENST00000468653 COL22A1Q8NFW1 1626 aaPredicted RBP24.29■■□□□ 1.48
SMC4-209ENST00000468653 PLEKHG2Q9H7P9 1386 aa24.28■■□□□ 1.48
SMC4-209ENST00000468653 ATF7IPQ6VMQ6 1270 aa24.28■■□□□ 1.48
SMC4-209ENST00000468653 RLBP1P12271 317 aa24.27■■□□□ 1.48
SMC4-209ENST00000468653 TCERG1O14776 1098 aaKnown RBP24.26■■□□□ 1.47
SMC4-209ENST00000468653 CARD10Q9BWT7 1032 aa24.26■■□□□ 1.47
SMC4-209ENST00000468653 COL16A1Q07092 1604 aaPredicted RBP24.26■■□□□ 1.47
SMC4-209ENST00000468653 TRIM27P14373 513 aa24.26■■□□□ 1.47
SMC4-209ENST00000468653 LARP1Q6PKG0 1096 aaKnown RBP24.25■■□□□ 1.47
SMC4-209ENST00000468653 BTG4Q9NY30 223 aa24.25■■□□□ 1.47
SMC4-209ENST00000468653 OVOS2A0A0G2JMS6 1433 aa24.24■■□□□ 1.47
SMC4-209ENST00000468653 IFNL2Q8IZJ0 200 aa24.24■■□□□ 1.47
SMC4-209ENST00000468653 PHKG2P15735 406 aa24.23■■□□□ 1.47
SMC4-209ENST00000468653 COL14A1Q05707 1796 aaKnown RBP24.21■■□□□ 1.47
SMC4-209ENST00000468653 MVPQ14764 893 aaKnown RBP24.21■■□□□ 1.47
SMC4-209ENST00000468653 ARHGAP45Q92619 1136 aa24.21■■□□□ 1.47
SMC4-209ENST00000468653 BTBD11A6QL63 1104 aa24.21■■□□□ 1.47
SMC4-209ENST00000468653 IL2RBP14784 551 aa24.2■■□□□ 1.46
SMC4-209ENST00000468653 AAMPQ13685 434 aa24.2■■□□□ 1.46
SMC4-209ENST00000468653 SOS1Q07889 1333 aaPredicted RBP24.19■■□□□ 1.46
SMC4-209ENST00000468653 CYP27B1O15528 508 aa24.18■■□□□ 1.46
SMC4-209ENST00000468653 ADAMTS2O95450 1211 aa24.18■■□□□ 1.46
SMC4-209ENST00000468653 HSP90AB1P08238 724 aaKnown RBP24.18■■□□□ 1.46
SMC4-209ENST00000468653 PKD1L3Q7Z443 1732 aa24.18■■□□□ 1.46
SMC4-209ENST00000468653 ZCRB1Q8TBF4 217 aaKnown RBP24.18■■□□□ 1.46
SMC4-209ENST00000468653 PARP4Q9UKK3 1724 aaKnown RBP24.17■■□□□ 1.46
SMC4-209ENST00000468653 ITPRIPQ8IWB1 547 aa24.17■■□□□ 1.46
SMC4-209ENST00000468653 CERKQ8TCT0 537 aa24.17■■□□□ 1.46
SMC4-209ENST00000468653 NUTM2BA6NNL0 878 aaPredicted RBP24.16■■□□□ 1.46
SMC4-209ENST00000468653 NUTM2EB1AL46 878 aaPredicted RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms