RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 TOM1L2Q6ZVM7 507 aa14.12□□□□□ -0.15
MSX1-202ENST00000468421 SPINK5Q9NQ38 1064 aaPredicted RBP14.12□□□□□ -0.15
MSX1-202ENST00000468421 EVA1CP58658 441 aa14.11□□□□□ -0.15
MSX1-202ENST00000468421 GOLGA2Q08379 1002 aa14.11□□□□□ -0.15
MSX1-202ENST00000468421 OVOS2A0A0G2JMS6 1433 aa14.1□□□□□ -0.15
MSX1-202ENST00000468421 SLFN5Q08AF3 891 aa14.1□□□□□ -0.15
MSX1-202ENST00000468421 GAS2L2Q8NHY3 880 aa14.1□□□□□ -0.15
MSX1-202ENST00000468421 THUMPD2Q9BTF0 503 aaKnown RBP14.1□□□□□ -0.15
MSX1-202ENST00000468421 CARD10Q9BWT7 1032 aa14.1□□□□□ -0.15
MSX1-202ENST00000468421 ADAMTS7Q9UKP4 1686 aa14.1□□□□□ -0.15
MSX1-202ENST00000468421 SCN11AQ9UI33 1791 aa14.09□□□□□ -0.15
MSX1-202ENST00000468421 WDR63Q8IWG1 891 aa14.09□□□□□ -0.15
MSX1-202ENST00000468421 MAP3K5Q99683 1374 aa14.09□□□□□ -0.15
MSX1-202ENST00000468421 DISP2A7MBM2 1401 aa14.08□□□□□ -0.15
MSX1-202ENST00000468421 BCL9LQ86UU0 1499 aa14.08□□□□□ -0.16
MSX1-202ENST00000468421 DCTN1Q14203 1278 aa14.08□□□□□ -0.16
MSX1-202ENST00000468421 RAPGEF4Q8WZA2 1011 aa14.08□□□□□ -0.16
MSX1-202ENST00000468421 C8orf37Q96NL8 207 aa14.08□□□□□ -0.16
MSX1-202ENST00000468421 SIPA1L3O60292 1781 aaPredicted RBP14.08□□□□□ -0.16
MSX1-202ENST00000468421 PLEKHG2Q9H7P9 1386 aa14.08□□□□□ -0.16
MSX1-202ENST00000468421 TATP17735 454 aaPredicted RBP14.07□□□□□ -0.16
MSX1-202ENST00000468421 LMOD3Q0VAK6 560 aa14.07□□□□□ -0.16
MSX1-202ENST00000468421 PLEKHO1Q53GL0 409 aaPredicted RBP14.07□□□□□ -0.16
MSX1-202ENST00000468421 DUSP27Q5VZP5 1158 aa14.07□□□□□ -0.16
MSX1-202ENST00000468421 TRMT2AQ8IZ69 625 aaKnown RBP14.07□□□□□ -0.16
MSX1-202ENST00000468421 E9PSI1 815 aa14.06□□□□□ -0.16
MSX1-202ENST00000468421 AMOTQ4VCS5 1084 aa14.06□□□□□ -0.16
MSX1-202ENST00000468421 ZNF530Q6P9A1 599 aaPredicted RBP14.06□□□□□ -0.16
MSX1-202ENST00000468421 MCM10Q7L590 875 aa14.06□□□□□ -0.16
MSX1-202ENST00000468421 USP35Q9P2H5 1018 aa14.06□□□□□ -0.16
MSX1-202ENST00000468421 IL16Q14005 1332 aa14.06□□□□□ -0.16
MSX1-202ENST00000468421 GNAT3A8MTJ3 354 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 IL2RBP14784 551 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 UNC5CLQ8IV45 518 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 FNBP4Q8N3X1 1017 aaPredicted RBP14.04□□□□□ -0.16
MSX1-202ENST00000468421 NGLY1Q96IV0 654 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 SPATA31A1Q5TZJ5 1347 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 TOGARAM1Q9Y4F4 1720 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 KDM3BQ7LBC6 1761 aa14.04□□□□□ -0.16
MSX1-202ENST00000468421 HTATSF1O43719 755 aaKnown RBP14.03□□□□□ -0.16
MSX1-202ENST00000468421 AKAP4Q5JQC9 854 aa14.03□□□□□ -0.16
MSX1-202ENST00000468421 MEX3CQ5U5Q3 659 aaKnown RBP14.03□□□□□ -0.16
MSX1-202ENST00000468421 IL17REQ8NFR9 667 aa14.03□□□□□ -0.16
MSX1-202ENST00000468421 TSR2Q969E8 191 aaKnown RBP14.03□□□□□ -0.16
MSX1-202ENST00000468421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.03□□□□□ -0.16
MSX1-202ENST00000468421 SPATA31A5Q5VU36 1347 aa14.03□□□□□ -0.16
MSX1-202ENST00000468421 SPATA31A7Q8IWB4 1347 aa14.03□□□□□ -0.16
MSX1-202ENST00000468421 FANCIQ9NVI1 1328 aa14.03□□□□□ -0.16
MSX1-202ENST00000468421 GLI3P10071 1580 aa14.02□□□□□ -0.16
MSX1-202ENST00000468421 KDM6AO15550 1401 aaPredicted RBP14.02□□□□□ -0.16
MSX1-202ENST00000468421 CEMIPQ8WUJ3 1361 aa14.02□□□□□ -0.17
MSX1-202ENST00000468421 ZNF853P0CG23 659 aa14.02□□□□□ -0.17
MSX1-202ENST00000468421 RTF1Q92541 710 aaKnown RBP14.02□□□□□ -0.17
MSX1-202ENST00000468421 SPG7Q9UQ90 795 aa14.02□□□□□ -0.17
MSX1-202ENST00000468421 AFF2P51816 1311 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 CYP27B1O15528 508 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 PHKG2P15735 406 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 CALD1Q05682 793 aaKnown RBP14.01□□□□□ -0.17
MSX1-202ENST00000468421 C1orf141Q5JVX7 400 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 LGR6Q9HBX8 967 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 IFT57Q9NWB7 429 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 THSD7AQ9UPZ6 1657 aa14.01□□□□□ -0.17
MSX1-202ENST00000468421 MRC1P22897 1456 aa14□□□□□ -0.17
MSX1-202ENST00000468421 TNS2Q63HR2 1409 aa14□□□□□ -0.17
MSX1-202ENST00000468421 RNMTO43148 476 aaKnown RBP14□□□□□ -0.17
MSX1-202ENST00000468421 VPS72Q15906 364 aa14□□□□□ -0.17
MSX1-202ENST00000468421 MPRIPQ6WCQ1 1025 aa14□□□□□ -0.17
MSX1-202ENST00000468421 ZCRB1Q8TBF4 217 aaKnown RBP14□□□□□ -0.17
MSX1-202ENST00000468421 MYH16Q9H6N6 1097 aa14□□□□□ -0.17
MSX1-202ENST00000468421 USP21Q9UK80 565 aa14□□□□□ -0.17
MSX1-202ENST00000468421 LAS1LQ9Y4W2 734 aaKnown RBP14□□□□□ -0.17
MSX1-202ENST00000468421 PCDH11XQ9BZA7 1347 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 PCDH11YQ9BZA8 1340 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 GNAI1P63096 354 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 IFNL2Q8IZJ0 200 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 CFAP44Q96MT7 982 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 MBIPQ9NS73 344 aa13.99□□□□□ -0.17
MSX1-202ENST00000468421 THRAP3Q9Y2W1 955 aaKnown RBP13.99□□□□□ -0.17
MSX1-202ENST00000468421 CCDC9Q9Y3X0 531 aaKnown RBP13.99□□□□□ -0.17
MSX1-202ENST00000468421 ATRNO75882 1429 aa13.98□□□□□ -0.17
MSX1-202ENST00000468421 ITGB4P16144 1822 aa13.98□□□□□ -0.17
MSX1-202ENST00000468421 DOT1LQ8TEK3 1739 aa13.98□□□□□ -0.17
MSX1-202ENST00000468421 CHL1O00533 1208 aa13.97□□□□□ -0.17
MSX1-202ENST00000468421 EXOSC9Q06265 439 aaKnown RBP13.97□□□□□ -0.17
MSX1-202ENST00000468421 BARGINQ6ZT62 677 aa13.96□□□□□ -0.17
MSX1-202ENST00000468421 MIS18AQ9NYP9 233 aa13.96□□□□□ -0.17
MSX1-202ENST00000468421 RCAN3Q9UKA8 241 aa13.96□□□□□ -0.17
MSX1-202ENST00000468421 PAPPAQ13219 1627 aa13.96□□□□□ -0.17
MSX1-202ENST00000468421 DDX54Q8TDD1 881 aaKnown RBP13.95□□□□□ -0.18
MSX1-202ENST00000468421 SUPT16HQ9Y5B9 1047 aaKnown RBP13.95□□□□□ -0.18
MSX1-202ENST00000468421 HSP90AB1P08238 724 aaKnown RBP13.94□□□□□ -0.18
MSX1-202ENST00000468421 NKX1-1Q15270 411 aaPredicted RBP13.94□□□□□ -0.18
MSX1-202ENST00000468421 TAF7Q15545 349 aaPredicted RBP13.94□□□□□ -0.18
MSX1-202ENST00000468421 FAM98CQ17RN3 349 aaKnown RBP13.94□□□□□ -0.18
MSX1-202ENST00000468421 DCAF5Q96JK2 942 aa13.94□□□□□ -0.18
MSX1-202ENST00000468421 CDCA7Q9BWT1 371 aaPredicted RBP13.94□□□□□ -0.18
MSX1-202ENST00000468421 TSPYL4Q9UJ04 414 aa13.94□□□□□ -0.18
MSX1-202ENST00000468421 TEFQ10587 303 aa13.93□□□□□ -0.18
MSX1-202ENST00000468421 KRT24Q2M2I5 525 aa13.93□□□□□ -0.18
MSX1-202ENST00000468421 TSPYL6Q8N831 410 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms