RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 CPS1P31327 1500 aa9.1□□□□□ -0.95
PTCD3-207ENST00000467273 TOM1O60784 492 aa9.09□□□□□ -0.95
PTCD3-207ENST00000467273 CCNYL3P0C7X3 344 aa9.09□□□□□ -0.95
PTCD3-207ENST00000467273 PURBQ96QR8 312 aaKnown RBP9.09□□□□□ -0.95
PTCD3-207ENST00000467273 MYO3AQ8NEV4 1616 aa9.09□□□□□ -0.95
PTCD3-207ENST00000467273 SUPT6HQ7KZ85 1726 aaKnown RBP9.08□□□□□ -0.96
PTCD3-207ENST00000467273 CEP170BQ9Y4F5 1589 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-207ENST00000467273 SOBPA7XYQ1 873 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 C6orf229H3BNL8 230 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 MS4A1P11836 297 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 HSPA1LP34931 641 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 SCARF1Q14162 830 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 NUTM1Q86Y26 1132 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 ZMYM3Q14202 1370 aa9.08□□□□□ -0.96
PTCD3-207ENST00000467273 CLIP1P30622 1438 aa9.07□□□□□ -0.96
PTCD3-207ENST00000467273 TROQ12816 1431 aaPredicted RBP9.07□□□□□ -0.96
PTCD3-207ENST00000467273 EEA1Q15075 1411 aa9.07□□□□□ -0.96
PTCD3-207ENST00000467273 PTPRKQ15262 1439 aa9.07□□□□□ -0.96
PTCD3-207ENST00000467273 NNTQ13423 1086 aa9.07□□□□□ -0.96
PTCD3-207ENST00000467273 MRPL14Q6P1L8 145 aaKnown RBP9.07□□□□□ -0.96
PTCD3-207ENST00000467273 KIDINS220Q9ULH0 1771 aa9.07□□□□□ -0.96
PTCD3-207ENST00000467273 FMN1Q68DA7 1419 aa9.06□□□□□ -0.96
PTCD3-207ENST00000467273 ABCC1P33527 1531 aa9.06□□□□□ -0.96
PTCD3-207ENST00000467273 UNC93B1Q9H1C4 597 aa9.06□□□□□ -0.96
PTCD3-207ENST00000467273 PREX2Q70Z35 1606 aa9.05□□□□□ -0.96
PTCD3-207ENST00000467273 CDC42BPBQ9Y5S2 1711 aa9.05□□□□□ -0.96
PTCD3-207ENST00000467273 ITSN2Q9NZM3 1697 aa9.05□□□□□ -0.96
PTCD3-207ENST00000467273 IRF6O14896 467 aa9.05□□□□□ -0.96
PTCD3-207ENST00000467273 SUZ12Q15022 739 aaKnown RBP9.05□□□□□ -0.96
PTCD3-207ENST00000467273 BAP1Q92560 729 aa9.05□□□□□ -0.96
PTCD3-207ENST00000467273 PLEKHG3A1L390 1219 aa9.04□□□□□ -0.96
PTCD3-207ENST00000467273 FDX1P10109 184 aa9.04□□□□□ -0.96
PTCD3-207ENST00000467273 WDR4P57081 412 aaKnown RBP9.04□□□□□ -0.96
PTCD3-207ENST00000467273 SHANK2Q9UPX8 1470 aa9.03□□□□□ -0.96
PTCD3-207ENST00000467273 POLR1AO95602 1720 aaPredicted RBP9.03□□□□□ -0.96
PTCD3-207ENST00000467273 TULP1O00294 542 aaPredicted RBP9.03□□□□□ -0.96
PTCD3-207ENST00000467273 ADH1CP00326 375 aa9.03□□□□□ -0.96
PTCD3-207ENST00000467273 GPCPD1Q9NPB8 672 aa9.03□□□□□ -0.96
PTCD3-207ENST00000467273 A2ML1A8K2U0 1454 aa9.02□□□□□ -0.96
PTCD3-207ENST00000467273 TIMP2P16035 220 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 PTPRNQ16849 979 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 KCTD17Q8N5Z5 321 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 ZNF511Q8NB15 262 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 FAM217BQ9NTX9 383 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-207ENST00000467273 PCDHGC3Q9UN70 934 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 PLXNC1O60486 1568 aa9.02□□□□□ -0.97
PTCD3-207ENST00000467273 CLTCQ00610 1675 aaKnown RBP9.01□□□□□ -0.97
PTCD3-207ENST00000467273 VSIG8P0DPA2 414 aa9.01□□□□□ -0.97
PTCD3-207ENST00000467273 VARSP26640 1264 aaKnown RBP9.01□□□□□ -0.97
PTCD3-207ENST00000467273 CLCN1P35523 988 aa9.01□□□□□ -0.97
PTCD3-207ENST00000467273 PIP4K2BP78356 416 aa9.01□□□□□ -0.97
PTCD3-207ENST00000467273 KRI1Q8N9T8 703 aaKnown RBP9.01□□□□□ -0.97
PTCD3-207ENST00000467273 CCDC102AQ96A19 550 aa9.01□□□□□ -0.97
PTCD3-207ENST00000467273 DNMT1P26358 1616 aaKnown RBP9.01□□□□□ -0.97
PTCD3-207ENST00000467273 SAMD9LQ8IVG5 1584 aa9□□□□□ -0.97
PTCD3-207ENST00000467273 MAN1A2O60476 641 aa9□□□□□ -0.97
PTCD3-207ENST00000467273 NEURL4Q96JN8 1562 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 ALKQ9UM73 1620 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 RANGAP1P46060 587 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-207ENST00000467273 KCNH2Q12809 1159 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 C6orf118Q5T5N4 469 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 EVA1BQ9NVM1 165 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 FAM135AQ9P2D6 1515 aa8.99□□□□□ -0.97
PTCD3-207ENST00000467273 MINK1Q8N4C8 1332 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-207ENST00000467273 DEPDC5O75140 1603 aa8.98□□□□□ -0.97
PTCD3-207ENST00000467273 MED14O60244 1454 aa8.98□□□□□ -0.97
PTCD3-207ENST00000467273 ARID5BQ14865 1188 aa8.98□□□□□ -0.97
PTCD3-207ENST00000467273 ZC3H15Q8WU90 426 aaKnown RBP8.98□□□□□ -0.97
PTCD3-207ENST00000467273 VWDEQ8N2E2 1590 aa8.98□□□□□ -0.97
PTCD3-207ENST00000467273 CDC42BPAQ5VT25 1732 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 A2MP01023 1474 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 CCDC18Q5T9S5 1454 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 ATP7AQ04656 1500 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 PRR7Q8TB68 274 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 SYNMO15061 1565 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 INO80Q9ULG1 1556 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-207ENST00000467273 SPAG9O60271 1321 aaKnown RBP8.97□□□□□ -0.97
PTCD3-207ENST00000467273 RNF17Q9BXT8 1623 aaKnown RBP8.97□□□□□ -0.97
PTCD3-207ENST00000467273 KIAA1107Q9UPP5 1409 aa8.97□□□□□ -0.97
PTCD3-207ENST00000467273 PLEKHH2Q8IVE3 1493 aa8.96□□□□□ -0.97
PTCD3-207ENST00000467273 ZIC2O95409 532 aaPredicted RBP8.96□□□□□ -0.98
PTCD3-207ENST00000467273 KCNMA1Q12791 1236 aa8.96□□□□□ -0.98
PTCD3-207ENST00000467273 MPNDQ8N594 471 aa8.96□□□□□ -0.98
PTCD3-207ENST00000467273 FAM174AQ8TBP5 190 aa8.96□□□□□ -0.98
PTCD3-207ENST00000467273 ZFAND3Q9H8U3 227 aa8.96□□□□□ -0.98
PTCD3-207ENST00000467273 ADGBQ8N7X0 1667 aa8.96□□□□□ -0.98
PTCD3-207ENST00000467273 LRRIQ1Q96JM4 1722 aa8.95□□□□□ -0.98
PTCD3-207ENST00000467273 CTHP32929 405 aa8.95□□□□□ -0.98
PTCD3-207ENST00000467273 ANKLE2Q86XL3 938 aa8.95□□□□□ -0.98
PTCD3-207ENST00000467273 ATP1B4Q9UN42 357 aaPredicted RBP8.95□□□□□ -0.98
PTCD3-207ENST00000467273 ARHGAP35Q9NRY4 1499 aa8.95□□□□□ -0.98
PTCD3-207ENST00000467273 PPFIA3O75145 1194 aa8.94□□□□□ -0.98
PTCD3-207ENST00000467273 NDUFV2P19404 249 aa8.94□□□□□ -0.98
PTCD3-207ENST00000467273 THEMISQ8N1K5 641 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-207ENST00000467273 NLRP1Q9C000 1473 aa8.94□□□□□ -0.98
PTCD3-207ENST00000467273 SYCP2Q9BX26 1530 aa8.94□□□□□ -0.98
PTCD3-207ENST00000467273 BMP2P12643 396 aa8.93□□□□□ -0.98
PTCD3-207ENST00000467273 TMEM151AQ8N4L1 468 aa8.93□□□□□ -0.98
PTCD3-207ENST00000467273 ITPKCQ96DU7 683 aa8.93□□□□□ -0.98
PTCD3-207ENST00000467273 KLF16Q9BXK1 252 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms