RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 LARP1Q6PKG0 1096 aaKnown RBP16.99■□□□□ 0.31
COL4A1-202ENST00000467182 CARD10Q9BWT7 1032 aa16.99■□□□□ 0.31
COL4A1-202ENST00000467182 SLIT2O94813 1529 aa16.99■□□□□ 0.31
COL4A1-202ENST00000467182 MAP3K5Q99683 1374 aa16.99■□□□□ 0.31
COL4A1-202ENST00000467182 WNK3Q9BYP7 1800 aa16.98■□□□□ 0.31
COL4A1-202ENST00000467182 HTATSF1O43719 755 aaKnown RBP16.98■□□□□ 0.31
COL4A1-202ENST00000467182 SHANK3Q9BYB0 1731 aa16.98■□□□□ 0.31
COL4A1-202ENST00000467182 RNF123Q5XPI4 1314 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 FANCIQ9NVI1 1328 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 OVOS2A0A0G2JMS6 1433 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 NUTM2BA6NNL0 878 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-202ENST00000467182 NUTM2EB1AL46 878 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-202ENST00000467182 ADAMTS2O95450 1211 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 AMOTQ4VCS5 1084 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 PLEKHO1Q53GL0 409 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-202ENST00000467182 TOM1L2Q6ZVM7 507 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 MCM10Q7L590 875 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 NUTM2AQ8IVF1 878 aaPredicted RBP16.97■□□□□ 0.31
COL4A1-202ENST00000467182 STRN4Q9NRL3 753 aa16.97■□□□□ 0.31
COL4A1-202ENST00000467182 SUPT16HQ9Y5B9 1047 aaKnown RBP16.97■□□□□ 0.31
COL4A1-202ENST00000467182 SPATA31A6Q5VVP1 1343 aa16.96■□□□□ 0.31
COL4A1-202ENST00000467182 GNAT3A8MTJ3 354 aa16.96■□□□□ 0.31
COL4A1-202ENST00000467182 MYH16Q9H6N6 1097 aa16.96■□□□□ 0.31
COL4A1-202ENST00000467182 CEMIPQ8WUJ3 1361 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 TATP17735 454 aaPredicted RBP16.95■□□□□ 0.3
COL4A1-202ENST00000467182 EVA1CP58658 441 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 CALD1Q05682 793 aaKnown RBP16.95■□□□□ 0.3
COL4A1-202ENST00000467182 IL17REQ8NFR9 667 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 RAPGEF4Q8WZA2 1011 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 TSR2Q969E8 191 aaKnown RBP16.95■□□□□ 0.3
COL4A1-202ENST00000467182 IFT57Q9NWB7 429 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.95■□□□□ 0.3
COL4A1-202ENST00000467182 DISP2A7MBM2 1401 aa16.95■□□□□ 0.3
COL4A1-202ENST00000467182 AKAP4Q5JQC9 854 aa16.94■□□□□ 0.3
COL4A1-202ENST00000467182 ZNF530Q6P9A1 599 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-202ENST00000467182 RCAN3Q9UKA8 241 aa16.94■□□□□ 0.3
COL4A1-202ENST00000467182 SIPA1L3O60292 1781 aaPredicted RBP16.94■□□□□ 0.3
COL4A1-202ENST00000467182 SCN11AQ9UI33 1791 aa16.93■□□□□ 0.3
COL4A1-202ENST00000467182 GNAI1P63096 354 aa16.93■□□□□ 0.3
COL4A1-202ENST00000467182 CFAP44Q96MT7 982 aa16.93■□□□□ 0.3
COL4A1-202ENST00000467182 RTF1Q92541 710 aaKnown RBP16.92■□□□□ 0.3
COL4A1-202ENST00000467182 MBIPQ9NS73 344 aa16.92■□□□□ 0.3
COL4A1-202ENST00000467182 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.92■□□□□ 0.3
COL4A1-202ENST00000467182 CHL1O00533 1208 aa16.91■□□□□ 0.3
COL4A1-202ENST00000467182 BCL9LQ86UU0 1499 aa16.91■□□□□ 0.3
COL4A1-202ENST00000467182 KDM3BQ7LBC6 1761 aa16.9■□□□□ 0.3
COL4A1-202ENST00000467182 PHKG2P15735 406 aa16.9■□□□□ 0.3
COL4A1-202ENST00000467182 EXOSC9Q06265 439 aaKnown RBP16.9■□□□□ 0.3
COL4A1-202ENST00000467182 LGR6Q9HBX8 967 aa16.9■□□□□ 0.3
COL4A1-202ENST00000467182 SPG7Q9UQ90 795 aa16.9■□□□□ 0.3
COL4A1-202ENST00000467182 GTF3C3Q9Y5Q9 886 aa16.9■□□□□ 0.3
COL4A1-202ENST00000467182 KDM6AO15550 1401 aaPredicted RBP16.89■□□□□ 0.29
COL4A1-202ENST00000467182 CYP27B1O15528 508 aa16.89■□□□□ 0.29
COL4A1-202ENST00000467182 IL2RBP14784 551 aa16.89■□□□□ 0.29
COL4A1-202ENST00000467182 LAS1LQ9Y4W2 734 aaKnown RBP16.89■□□□□ 0.29
COL4A1-202ENST00000467182 SPATA31A1Q5TZJ5 1347 aa16.89■□□□□ 0.29
COL4A1-202ENST00000467182 RNMTO43148 476 aaKnown RBP16.88■□□□□ 0.29
COL4A1-202ENST00000467182 C1orf141Q5JVX7 400 aa16.88■□□□□ 0.29
COL4A1-202ENST00000467182 FNBP4Q8N3X1 1017 aaPredicted RBP16.88■□□□□ 0.29
COL4A1-202ENST00000467182 MRC1P22897 1456 aa16.87■□□□□ 0.29
COL4A1-202ENST00000467182 MPRIPQ6WCQ1 1025 aa16.87■□□□□ 0.29
COL4A1-202ENST00000467182 SPATA31A5Q5VU36 1347 aa16.87■□□□□ 0.29
COL4A1-202ENST00000467182 SPATA31A7Q8IWB4 1347 aa16.87■□□□□ 0.29
COL4A1-202ENST00000467182 CT47B1P0C2W7 299 aaPredicted RBP16.86■□□□□ 0.29
COL4A1-202ENST00000467182 RRP1P56182 461 aaKnown RBP16.86■□□□□ 0.29
COL4A1-202ENST00000467182 UNC5CLQ8IV45 518 aa16.86■□□□□ 0.29
COL4A1-202ENST00000467182 IFNL2Q8IZJ0 200 aa16.86■□□□□ 0.29
COL4A1-202ENST00000467182 ZCRB1Q8TBF4 217 aaKnown RBP16.86■□□□□ 0.29
COL4A1-202ENST00000467182 C8orf37Q96NL8 207 aa16.86■□□□□ 0.29
COL4A1-202ENST00000467182 BABAM1Q9NWV8 329 aa16.86■□□□□ 0.29
COL4A1-202ENST00000467182 TOGARAM1Q9Y4F4 1720 aa16.85■□□□□ 0.29
COL4A1-202ENST00000467182 RARSP54136 660 aaKnown RBP16.85■□□□□ 0.29
COL4A1-202ENST00000467182 USP35Q9P2H5 1018 aa16.85■□□□□ 0.29
COL4A1-202ENST00000467182 TAF7Q15545 349 aaPredicted RBP16.84■□□□□ 0.29
COL4A1-202ENST00000467182 TSPYL6Q8N831 410 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 C8orf58Q8NAV2 365 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 NGLY1Q96IV0 654 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 MIS18AQ9NYP9 233 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 THRAP3Q9Y2W1 955 aaKnown RBP16.84■□□□□ 0.29
COL4A1-202ENST00000467182 PCDH11XQ9BZA7 1347 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 PCDH11YQ9BZA8 1340 aa16.84■□□□□ 0.29
COL4A1-202ENST00000467182 VAMP4O75379 141 aa16.83■□□□□ 0.28
COL4A1-202ENST00000467182 BCAR3O75815 825 aa16.83■□□□□ 0.28
COL4A1-202ENST00000467182 NKX1-1Q15270 411 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-202ENST00000467182 VPS72Q15906 364 aa16.83■□□□□ 0.28
COL4A1-202ENST00000467182 TSPYL4Q9UJ04 414 aa16.82■□□□□ 0.28
COL4A1-202ENST00000467182 TNS2Q63HR2 1409 aa16.81■□□□□ 0.28
COL4A1-202ENST00000467182 KRT24Q2M2I5 525 aa16.81■□□□□ 0.28
COL4A1-202ENST00000467182 BARGINQ6ZT62 677 aa16.81■□□□□ 0.28
COL4A1-202ENST00000467182 DCAF5Q96JK2 942 aa16.81■□□□□ 0.28
COL4A1-202ENST00000467182 HSP90AB1P08238 724 aaKnown RBP16.8■□□□□ 0.28
COL4A1-202ENST00000467182 IRX6P78412 446 aaPredicted RBP16.8■□□□□ 0.28
COL4A1-202ENST00000467182 FKBP8Q14318 412 aa16.8■□□□□ 0.28
COL4A1-202ENST00000467182 CDCA7Q9BWT1 371 aaPredicted RBP16.8■□□□□ 0.28
COL4A1-202ENST00000467182 GLI3P10071 1580 aa16.8■□□□□ 0.28
COL4A1-202ENST00000467182 THSD7AQ9UPZ6 1657 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 PAPPAQ13219 1627 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 PLIN1O60240 522 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 TEFQ10587 303 aa16.79■□□□□ 0.28
COL4A1-202ENST00000467182 TWISTNBQ3B726 338 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms