RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-208ENST00000465721 KIF20BQ96Q89 1820 aa16.75■□□□□ 0.27
CNOT4-208ENST00000465721 IP6K1Q92551 441 aa16.75■□□□□ 0.27
CNOT4-208ENST00000465721 SLC16A10Q8TF71 515 aa16.74■□□□□ 0.27
CNOT4-208ENST00000465721 TERF2IPQ9NYB0 399 aa16.74■□□□□ 0.27
CNOT4-208ENST00000465721 ITGB4P16144 1822 aa16.74■□□□□ 0.27
CNOT4-208ENST00000465721 C1QTNF8P60827 252 aa16.73■□□□□ 0.27
CNOT4-208ENST00000465721 DDX54Q8TDD1 881 aaKnown RBP16.73■□□□□ 0.27
CNOT4-208ENST00000465721 TOGARAM1Q9Y4F4 1720 aa16.73■□□□□ 0.27
CNOT4-208ENST00000465721 SENP3-EIF4A1A0A087X0R7 540 aa16.72■□□□□ 0.27
CNOT4-208ENST00000465721 PUS7Q96PZ0 661 aaKnown RBP16.72■□□□□ 0.27
CNOT4-208ENST00000465721 MAP3K19Q56UN5 1328 aa16.71■□□□□ 0.27
CNOT4-208ENST00000465721 KCNQ4P56696 695 aa16.71■□□□□ 0.27
CNOT4-208ENST00000465721 CNKSR2Q8WXI2 1034 aa16.71■□□□□ 0.27
CNOT4-208ENST00000465721 LTV1Q96GA3 475 aaPredicted RBP16.71■□□□□ 0.27
CNOT4-208ENST00000465721 RTL1A6NKG5 1358 aa16.7■□□□□ 0.26
CNOT4-208ENST00000465721 POLD1P28340 1107 aa16.7■□□□□ 0.26
CNOT4-208ENST00000465721 HOXC9P31274 260 aa16.7■□□□□ 0.26
CNOT4-208ENST00000465721 GPR162Q16538 588 aa16.7■□□□□ 0.26
CNOT4-208ENST00000465721 PKD1L3Q7Z443 1732 aa16.7■□□□□ 0.26
CNOT4-208ENST00000465721 UBR3Q6ZT12 1888 aa16.69■□□□□ 0.26
CNOT4-208ENST00000465721 PRIM1P49642 420 aaKnown RBP16.69■□□□□ 0.26
CNOT4-208ENST00000465721 KLHL34Q8N239 644 aa16.69■□□□□ 0.26
CNOT4-208ENST00000465721 NLGN2Q8NFZ4 835 aa16.69■□□□□ 0.26
CNOT4-208ENST00000465721 SYTL4Q96C24 671 aaPredicted RBP16.68■□□□□ 0.26
CNOT4-208ENST00000465721 TESK2Q96S53 571 aa16.68■□□□□ 0.26
CNOT4-208ENST00000465721 TFCP2L1Q9NZI6 479 aa16.68■□□□□ 0.26
CNOT4-208ENST00000465721 C4BP0C0L5 1744 aa16.66■□□□□ 0.26
CNOT4-208ENST00000465721 FBLN1P23142 703 aa16.66■□□□□ 0.26
CNOT4-208ENST00000465721 ZCRB1Q8TBF4 217 aaKnown RBP16.66■□□□□ 0.26
CNOT4-208ENST00000465721 COG3Q96JB2 828 aa16.66■□□□□ 0.26
CNOT4-208ENST00000465721 ANKRD26Q9UPS8 1709 aa16.66■□□□□ 0.26
CNOT4-208ENST00000465721 MAP2P11137 1827 aaKnown RBP16.66■□□□□ 0.26
CNOT4-208ENST00000465721 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
CNOT4-208ENST00000465721 CCNL1Q9UK58 526 aaPredicted RBP16.65■□□□□ 0.26
CNOT4-208ENST00000465721 TONSLQ96HA7 1378 aa16.64■□□□□ 0.26
CNOT4-208ENST00000465721 GIGYF1O75420 1035 aaPredicted RBP16.64■□□□□ 0.25
CNOT4-208ENST00000465721 YBX3P16989 372 aaKnown RBP eCLIP16.64■□□□□ 0.25
CNOT4-208ENST00000465721 AMPHP49418 695 aa16.64■□□□□ 0.25
CNOT4-208ENST00000465721 MAPK8IP2Q13387 824 aaPredicted RBP16.64■□□□□ 0.25
CNOT4-208ENST00000465721 USP47Q96K76 1375 aa16.64■□□□□ 0.25
CNOT4-208ENST00000465721 NBPF6Q5VWK0 638 aa16.62■□□□□ 0.25
CNOT4-208ENST00000465721 COL23A1Q86Y22 540 aaPredicted RBP16.62■□□□□ 0.25
CNOT4-208ENST00000465721 NBPF4Q96M43 638 aa16.62■□□□□ 0.25
CNOT4-208ENST00000465721 SMG6Q86US8 1419 aaKnown RBP16.62■□□□□ 0.25
CNOT4-208ENST00000465721 ST20-MTHFSA0A0A6YYL1 179 aa16.61■□□□□ 0.25
CNOT4-208ENST00000465721 RRS1Q15050 365 aaKnown RBP16.61■□□□□ 0.25
CNOT4-208ENST00000465721 USHBP1Q8N6Y0 703 aa16.61■□□□□ 0.25
CNOT4-208ENST00000465721 CGNL1Q0VF96 1302 aa16.61■□□□□ 0.25
CNOT4-208ENST00000465721 MSL1Q68DK7 614 aa16.6■□□□□ 0.25
CNOT4-208ENST00000465721 ATP10DQ9P241 1426 aa16.59■□□□□ 0.25
CNOT4-208ENST00000465721 GRIN3BO60391 1043 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 PCDH11XQ9BZA7 1347 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 PCDH11YQ9BZA8 1340 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 ADCY9O60503 1353 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 INSRP06213 1382 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 PALLDQ8WX93 1383 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 NCAPD2Q15021 1401 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 KIF13BQ9NQT8 1826 aa16.58■□□□□ 0.24
CNOT4-208ENST00000465721 FLT4P35916 1363 aa16.57■□□□□ 0.24
CNOT4-208ENST00000465721 FYB1O15117 783 aa16.57■□□□□ 0.24
CNOT4-208ENST00000465721 RAPGEF4Q8WZA2 1011 aa16.57■□□□□ 0.24
CNOT4-208ENST00000465721 GGNBP2Q9H3C7 697 aa16.57■□□□□ 0.24
CNOT4-208ENST00000465721 KIAA1551Q9HCM1 1747 aa16.56■□□□□ 0.24
CNOT4-208ENST00000465721 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
CNOT4-208ENST00000465721 CICQ96RK0 1608 aaPredicted RBP16.56■□□□□ 0.24
CNOT4-208ENST00000465721 TATP17735 454 aaPredicted RBP16.55■□□□□ 0.24
CNOT4-208ENST00000465721 CYP27B1O15528 508 aa16.54■□□□□ 0.24
CNOT4-208ENST00000465721 SLC24A1O60721 1099 aa16.54■□□□□ 0.24
CNOT4-208ENST00000465721 HSP90AB2PQ58FF8 381 aa16.54■□□□□ 0.24
CNOT4-208ENST00000465721 AMIGO3Q86WK7 504 aa16.54■□□□□ 0.24
CNOT4-208ENST00000465721 CD2APQ9Y5K6 639 aa16.54■□□□□ 0.24
CNOT4-208ENST00000465721 FLAD1Q8NFF5 587 aa16.53■□□□□ 0.24
CNOT4-208ENST00000465721 BRCA1P38398 1863 aaKnown RBP16.52■□□□□ 0.23
CNOT4-208ENST00000465721 N4BP2Q86UW6 1770 aaPredicted RBP16.51■□□□□ 0.23
CNOT4-208ENST00000465721 COL5A3P25940 1745 aaPredicted RBP16.51■□□□□ 0.23
CNOT4-208ENST00000465721 MPRIPQ6WCQ1 1025 aa16.51■□□□□ 0.23
CNOT4-208ENST00000465721 NSD3Q9BZ95 1437 aa16.51■□□□□ 0.23
CNOT4-208ENST00000465721 ZNF831Q5JPB2 1677 aa16.5■□□□□ 0.23
CNOT4-208ENST00000465721 TMF1P82094 1093 aa16.49■□□□□ 0.23
CNOT4-208ENST00000465721 AK7Q96M32 723 aa16.49■□□□□ 0.23
CNOT4-208ENST00000465721 IGSF1Q8N6C5 1336 aa16.48■□□□□ 0.23
CNOT4-208ENST00000465721 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
CNOT4-208ENST00000465721 NPM3O75607 178 aaKnown RBP16.48■□□□□ 0.23
CNOT4-208ENST00000465721 HMGB2P26583 209 aaKnown RBP16.48■□□□□ 0.23
CNOT4-208ENST00000465721 PIGBQ92521 554 aa16.48■□□□□ 0.23
CNOT4-208ENST00000465721 SMARCC1Q92922 1105 aaPredicted RBP16.48■□□□□ 0.23
CNOT4-208ENST00000465721 EMILIN1Q9Y6C2 1016 aa16.48■□□□□ 0.23
CNOT4-208ENST00000465721 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.47■□□□□ 0.23
CNOT4-208ENST00000465721 IFFO2Q5TF58 517 aa16.47■□□□□ 0.23
CNOT4-208ENST00000465721 SMIM5Q71RC9 77 aa16.47■□□□□ 0.23
CNOT4-208ENST00000465721 MYH14Q7Z406 1995 aaKnown RBP16.46■□□□□ 0.23
CNOT4-208ENST00000465721 PHF14O94880 888 aa16.46■□□□□ 0.23
CNOT4-208ENST00000465721 NKX1-1Q15270 411 aaPredicted RBP16.46■□□□□ 0.23
CNOT4-208ENST00000465721 GPBP1L1Q9HC44 474 aaPredicted RBP16.46■□□□□ 0.23
CNOT4-208ENST00000465721 ARFGEF1Q9Y6D6 1849 aa16.45■□□□□ 0.22
CNOT4-208ENST00000465721 SSFA2P28290 1259 aa16.45■□□□□ 0.22
CNOT4-208ENST00000465721 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
CNOT4-208ENST00000465721 CARD14Q9BXL6 1004 aa16.45■□□□□ 0.22
CNOT4-208ENST00000465721 LOC102724428A0A0B4J2F2 783 aa16.44■□□□□ 0.22
CNOT4-208ENST00000465721 SIK1P57059 783 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms