RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 COL23A1Q86Y22 540 aaPredicted RBP14.09□□□□□ -0.15
USP39-212ENST00000465514 WWC3Q9ULE0 1092 aa14.09□□□□□ -0.15
USP39-212ENST00000465514 TAF1LQ8IZX4 1826 aa14.08□□□□□ -0.15
USP39-212ENST00000465514 USP54Q70EL1 1684 aa14.08□□□□□ -0.16
USP39-212ENST00000465514 NLRP2Q9NX02 1062 aa14.08□□□□□ -0.16
USP39-212ENST00000465514 ERBB3P21860 1342 aa14.08□□□□□ -0.16
USP39-212ENST00000465514 TOMM70O94826 608 aa14.07□□□□□ -0.16
USP39-212ENST00000465514 HTRA3P83110 453 aa14.06□□□□□ -0.16
USP39-212ENST00000465514 KLRG1Q96E93 195 aa14.06□□□□□ -0.16
USP39-212ENST00000465514 IGSF1Q8N6C5 1336 aa14.06□□□□□ -0.16
USP39-212ENST00000465514 NSD2O96028 1365 aa14.06□□□□□ -0.16
USP39-212ENST00000465514 FAM208AQ9UK61 1670 aaKnown RBP14.05□□□□□ -0.16
USP39-212ENST00000465514 MON2Q7Z3U7 1717 aa14.05□□□□□ -0.16
USP39-212ENST00000465514 NBPF1Q3BBV0 1214 aa14.05□□□□□ -0.16
USP39-212ENST00000465514 JMYQ8N9B5 988 aa14.05□□□□□ -0.16
USP39-212ENST00000465514 SYTL4Q96C24 671 aaPredicted RBP14.05□□□□□ -0.16
USP39-212ENST00000465514 CCNL1Q9UK58 526 aaPredicted RBP14.05□□□□□ -0.16
USP39-212ENST00000465514 TTC21BQ7Z4L5 1316 aa14.05□□□□□ -0.16
USP39-212ENST00000465514 DDX54Q8TDD1 881 aaKnown RBP14.04□□□□□ -0.16
USP39-212ENST00000465514 CENPJQ9HC77 1338 aaPredicted RBP14.04□□□□□ -0.16
USP39-212ENST00000465514 ANKRD36BQ8N2N9 1353 aa14.04□□□□□ -0.16
USP39-212ENST00000465514 TOGARAM1Q9Y4F4 1720 aa14.04□□□□□ -0.16
USP39-212ENST00000465514 UBR3Q6ZT12 1888 aa14.02□□□□□ -0.16
USP39-212ENST00000465514 SLC34A2O95436 690 aa14.02□□□□□ -0.17
USP39-212ENST00000465514 PRIM1P49642 420 aaKnown RBP14.02□□□□□ -0.17
USP39-212ENST00000465514 RNF216Q9NWF9 866 aaPredicted RBP14.02□□□□□ -0.17
USP39-212ENST00000465514 N4BP2Q86UW6 1770 aaPredicted RBP14.01□□□□□ -0.17
USP39-212ENST00000465514 TTC21AQ8NDW8 1320 aa14.01□□□□□ -0.17
USP39-212ENST00000465514 NMRK2Q9NPI5 230 aa14.01□□□□□ -0.17
USP39-212ENST00000465514 RGPD2P0DJD1 1756 aa14.01□□□□□ -0.17
USP39-212ENST00000465514 KIAA1551Q9HCM1 1747 aa14.01□□□□□ -0.17
USP39-212ENST00000465514 ANKRD24Q8TF21 1146 aa14□□□□□ -0.17
USP39-212ENST00000465514 C4BP0C0L5 1744 aa14□□□□□ -0.17
USP39-212ENST00000465514 PKD1L3Q7Z443 1732 aa14□□□□□ -0.17
USP39-212ENST00000465514 KIF13BQ9NQT8 1826 aa13.99□□□□□ -0.17
USP39-212ENST00000465514 RBM46Q8TBY0 533 aaKnown RBP13.98□□□□□ -0.17
USP39-212ENST00000465514 USP47Q96K76 1375 aa13.97□□□□□ -0.17
USP39-212ENST00000465514 ZNF692Q9BU19 519 aaPredicted RBP13.97□□□□□ -0.17
USP39-212ENST00000465514 BRCA1P38398 1863 aaKnown RBP13.97□□□□□ -0.17
USP39-212ENST00000465514 KTN1Q86UP2 1357 aaKnown RBP13.96□□□□□ -0.17
USP39-212ENST00000465514 L3MBTL2Q969R5 705 aa13.96□□□□□ -0.17
USP39-212ENST00000465514 TNRC6CQ9HCJ0 1690 aaKnown RBP13.95□□□□□ -0.18
USP39-212ENST00000465514 C16orf71Q8IYS4 520 aaPredicted RBP13.95□□□□□ -0.18
USP39-212ENST00000465514 FLAD1Q8NFF5 587 aa13.95□□□□□ -0.18
USP39-212ENST00000465514 EVC2Q86UK5 1308 aa13.94□□□□□ -0.18
USP39-212ENST00000465514 PXDNLA1KZ92 1463 aa13.94□□□□□ -0.18
USP39-212ENST00000465514 FSTL1Q12841 308 aa13.94□□□□□ -0.18
USP39-212ENST00000465514 ITGB4P16144 1822 aa13.94□□□□□ -0.18
USP39-212ENST00000465514 USP31Q70CQ4 1352 aa13.94□□□□□ -0.18
USP39-212ENST00000465514 ARFGEF1Q9Y6D6 1849 aa13.93□□□□□ -0.18
USP39-212ENST00000465514 AMIGO3Q86WK7 504 aa13.93□□□□□ -0.18
USP39-212ENST00000465514 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP39-212ENST00000465514 SIN3AQ96ST3 1273 aa13.93□□□□□ -0.18
USP39-212ENST00000465514 MEGF6O75095 1541 aa13.93□□□□□ -0.18
USP39-212ENST00000465514 PHF14O94880 888 aa13.92□□□□□ -0.18
USP39-212ENST00000465514 HSPA1AP0DMV8 641 aaKnown RBP13.92□□□□□ -0.18
USP39-212ENST00000465514 HSPA1BP0DMV9 641 aaKnown RBP13.92□□□□□ -0.18
USP39-212ENST00000465514 KCPQ6ZWJ8 1503 aa13.91□□□□□ -0.18
USP39-212ENST00000465514 SMIM5Q71RC9 77 aa13.91□□□□□ -0.18
USP39-212ENST00000465514 NME9Q86XW9 330 aa13.91□□□□□ -0.18
USP39-212ENST00000465514 LTV1Q96GA3 475 aaPredicted RBP13.91□□□□□ -0.18
USP39-212ENST00000465514 NEUROD1Q13562 356 aa13.9□□□□□ -0.18
USP39-212ENST00000465514 ZCRB1Q8TBF4 217 aaKnown RBP13.9□□□□□ -0.18
USP39-212ENST00000465514 AK7Q96M32 723 aa13.9□□□□□ -0.18
USP39-212ENST00000465514 BCS1LQ9Y276 419 aa13.9□□□□□ -0.18
USP39-212ENST00000465514 PALLDQ8WX93 1383 aa13.9□□□□□ -0.18
USP39-212ENST00000465514 PLEKHG2Q9H7P9 1386 aa13.9□□□□□ -0.18
USP39-212ENST00000465514 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
USP39-212ENST00000465514 ARHGAP27Q6ZUM4 889 aa13.89□□□□□ -0.19
USP39-212ENST00000465514 NSD3Q9BZ95 1437 aa13.89□□□□□ -0.19
USP39-212ENST00000465514 SBF1O95248 1867 aa13.89□□□□□ -0.19
USP39-212ENST00000465514 MAP2P11137 1827 aaKnown RBP13.88□□□□□ -0.19
USP39-212ENST00000465514 SBNO2Q9Y2G9 1366 aa13.88□□□□□ -0.19
USP39-212ENST00000465514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.88□□□□□ -0.19
USP39-212ENST00000465514 C10orf71Q711Q0 1435 aa13.88□□□□□ -0.19
USP39-212ENST00000465514 ROCK2O75116 1388 aaKnown RBP13.87□□□□□ -0.19
USP39-212ENST00000465514 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
USP39-212ENST00000465514 C9orf131Q5VYM1 1079 aa13.86□□□□□ -0.19
USP39-212ENST00000465514 IP6K1Q92551 441 aa13.86□□□□□ -0.19
USP39-212ENST00000465514 KDM2BQ8NHM5 1336 aa13.86□□□□□ -0.19
USP39-212ENST00000465514 A0A0G2JLW4 131 aa13.85□□□□□ -0.19
USP39-212ENST00000465514 HMGB2P26583 209 aaKnown RBP13.85□□□□□ -0.19
USP39-212ENST00000465514 SMC1BQ8NDV3 1235 aa13.85□□□□□ -0.19
USP39-212ENST00000465514 MMP10P09238 476 aa13.84□□□□□ -0.19
USP39-212ENST00000465514 SSFA2P28290 1259 aa13.84□□□□□ -0.19
USP39-212ENST00000465514 RRAGCQ9HB90 399 aa13.84□□□□□ -0.19
USP39-212ENST00000465514 C4AP0C0L4 1744 aa13.84□□□□□ -0.19
USP39-212ENST00000465514 FCHSD2O94868 740 aa13.83□□□□□ -0.2
USP39-212ENST00000465514 TGFB2P61812 414 aa13.83□□□□□ -0.2
USP39-212ENST00000465514 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
USP39-212ENST00000465514 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
USP39-212ENST00000465514 DPEP1P16444 411 aa13.81□□□□□ -0.2
USP39-212ENST00000465514 PCDH10Q9P2E7 1040 aa13.81□□□□□ -0.2
USP39-212ENST00000465514 HOXC9P31274 260 aa13.8□□□□□ -0.2
USP39-212ENST00000465514 CACNB1Q02641 598 aaPredicted RBP13.8□□□□□ -0.2
USP39-212ENST00000465514 LINC00116Q8NCU8 138 aa13.8□□□□□ -0.2
USP39-212ENST00000465514 RNF181Q9P0P0 153 aa13.8□□□□□ -0.2
USP39-212ENST00000465514 TIAM2Q8IVF5 1701 aa13.8□□□□□ -0.2
USP39-212ENST00000465514 GNPATO15228 680 aa13.79□□□□□ -0.2
USP39-212ENST00000465514 USHBP1Q8N6Y0 703 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms