RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 POLKQ9UBT6 870 aa17.82■□□□□ 0.44
COL28A1-206ENST00000465339 OVOS2A0A0G2JMS6 1433 aa17.81■□□□□ 0.44
COL28A1-206ENST00000465339 TNNT2P45379 298 aaPredicted RBP17.81■□□□□ 0.44
COL28A1-206ENST00000465339 BAG6P46379 1132 aa17.81■□□□□ 0.44
COL28A1-206ENST00000465339 TRIM37O94972 964 aa17.8■□□□□ 0.44
COL28A1-206ENST00000465339 AMER1Q5JTC6 1135 aaPredicted RBP17.8■□□□□ 0.44
COL28A1-206ENST00000465339 NBPF6Q5VWK0 638 aa17.8■□□□□ 0.44
COL28A1-206ENST00000465339 MARCH10Q8NA82 808 aaPredicted RBP17.8■□□□□ 0.44
COL28A1-206ENST00000465339 NBPF4Q96M43 638 aa17.8■□□□□ 0.44
COL28A1-206ENST00000465339 DEFB132Q7Z7B7 95 aa17.79■□□□□ 0.44
COL28A1-206ENST00000465339 TNS2Q63HR2 1409 aa17.79■□□□□ 0.44
COL28A1-206ENST00000465339 SBF2Q86WG5 1849 aa17.79■□□□□ 0.44
COL28A1-206ENST00000465339 TNS1Q9HBL0 1735 aaKnown RBP17.78■□□□□ 0.44
COL28A1-206ENST00000465339 BCL9O00512 1426 aa17.78■□□□□ 0.44
COL28A1-206ENST00000465339 APBA3O96018 575 aa17.76■□□□□ 0.43
COL28A1-206ENST00000465339 RAPGEF4Q8WZA2 1011 aa17.75■□□□□ 0.43
COL28A1-206ENST00000465339 NPC1L1Q9UHC9 1359 aa17.75■□□□□ 0.43
COL28A1-206ENST00000465339 EN1Q05925 392 aaPredicted RBP17.74■□□□□ 0.43
COL28A1-206ENST00000465339 ZCRB1Q8TBF4 217 aaKnown RBP17.74■□□□□ 0.43
COL28A1-206ENST00000465339 BCL11BQ9C0K0 894 aaPredicted RBP17.74■□□□□ 0.43
COL28A1-206ENST00000465339 TATP17735 454 aaPredicted RBP17.73■□□□□ 0.43
COL28A1-206ENST00000465339 ZEB1P37275 1124 aaPredicted RBP17.73■□□□□ 0.43
COL28A1-206ENST00000465339 USHBP1Q8N6Y0 703 aa17.73■□□□□ 0.43
COL28A1-206ENST00000465339 KAT6BQ8WYB5 2073 aa17.73■□□□□ 0.43
COL28A1-206ENST00000465339 CC2D1BQ5T0F9 858 aaKnown RBP17.72■□□□□ 0.43
COL28A1-206ENST00000465339 DDX54Q8TDD1 881 aaKnown RBP17.72■□□□□ 0.43
COL28A1-206ENST00000465339 PARD3Q8TEW0 1356 aa17.71■□□□□ 0.43
COL28A1-206ENST00000465339 EIF4A2Q14240 407 aaKnown RBP17.71■□□□□ 0.43
COL28A1-206ENST00000465339 CAMKK2Q96RR4 588 aa17.71■□□□□ 0.43
COL28A1-206ENST00000465339 EYA1Q99502 592 aa17.71■□□□□ 0.43
COL28A1-206ENST00000465339 MEGF6O75095 1541 aa17.71■□□□□ 0.43
COL28A1-206ENST00000465339 NCAPD2Q15021 1401 aa17.7■□□□□ 0.42
COL28A1-206ENST00000465339 PLSCR1O15162 318 aa17.69■□□□□ 0.42
COL28A1-206ENST00000465339 EZH2Q15910 746 aaKnown RBP17.69■□□□□ 0.42
COL28A1-206ENST00000465339 SHANK3Q9BYB0 1731 aa17.68■□□□□ 0.42
COL28A1-206ENST00000465339 RGPD3A6NKT7 1758 aaPredicted RBP17.67■□□□□ 0.42
COL28A1-206ENST00000465339 RGPD4Q7Z3J3 1758 aa17.67■□□□□ 0.42
COL28A1-206ENST00000465339 MTHFSP49914 203 aa17.67■□□□□ 0.42
COL28A1-206ENST00000465339 NHSQ6T4R5 1651 aa17.67■□□□□ 0.42
COL28A1-206ENST00000465339 KCNQ2O43526 872 aa17.66■□□□□ 0.42
COL28A1-206ENST00000465339 PTF1AQ7RTS3 328 aa17.66■□□□□ 0.42
COL28A1-206ENST00000465339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.66■□□□□ 0.42
COL28A1-206ENST00000465339 ACSBG1Q96GR2 724 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 SPG7Q9UQ90 795 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 IGSF1Q8N6C5 1336 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 PCDH11XQ9BZA7 1347 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 PCDH11YQ9BZA8 1340 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 PLEKHG2Q9H7P9 1386 aa17.65■□□□□ 0.42
COL28A1-206ENST00000465339 RREB1Q92766 1687 aa17.64■□□□□ 0.42
COL28A1-206ENST00000465339 PKD1L3Q7Z443 1732 aa17.64■□□□□ 0.41
COL28A1-206ENST00000465339 IL13P35225 146 aa17.63■□□□□ 0.41
COL28A1-206ENST00000465339 CNGB1Q14028 1251 aaPredicted RBP17.63■□□□□ 0.41
COL28A1-206ENST00000465339 BTAF1O14981 1849 aa17.61■□□□□ 0.41
COL28A1-206ENST00000465339 NBPF14Q5TI25 921 aa17.61■□□□□ 0.41
COL28A1-206ENST00000465339 RTN4Q9NQC3 1192 aaKnown RBP17.61■□□□□ 0.41
COL28A1-206ENST00000465339 ZBTB12Q9Y330 459 aaPredicted RBP17.61■□□□□ 0.41
COL28A1-206ENST00000465339 DOT1LQ8TEK3 1739 aa17.61■□□□□ 0.41
COL28A1-206ENST00000465339 CYP27B1O15528 508 aa17.6■□□□□ 0.41
COL28A1-206ENST00000465339 PRIM1P49642 420 aaKnown RBP17.6■□□□□ 0.41
COL28A1-206ENST00000465339 NUP188Q5SRE5 1749 aa17.6■□□□□ 0.41
COL28A1-206ENST00000465339 DIAPH1O60610 1272 aaKnown RBP17.59■□□□□ 0.41
COL28A1-206ENST00000465339 NKX1-1Q15270 411 aaPredicted RBP17.59■□□□□ 0.41
COL28A1-206ENST00000465339 PROM2Q8N271 834 aa17.59■□□□□ 0.41
COL28A1-206ENST00000465339 SYTL4Q96C24 671 aaPredicted RBP17.59■□□□□ 0.41
COL28A1-206ENST00000465339 TXNRD1Q16881 649 aa17.58■□□□□ 0.4
COL28A1-206ENST00000465339 PLEKHO1Q53GL0 409 aaPredicted RBP17.58■□□□□ 0.4
COL28A1-206ENST00000465339 IFNL2Q8IZJ0 200 aa17.58■□□□□ 0.4
COL28A1-206ENST00000465339 KDRP35968 1356 aa17.57■□□□□ 0.4
COL28A1-206ENST00000465339 AMOTQ4VCS5 1084 aa17.57■□□□□ 0.4
COL28A1-206ENST00000465339 SULT6B1Q6IMI4 303 aa17.57■□□□□ 0.4
COL28A1-206ENST00000465339 AEBP1Q8IUX7 1158 aa17.56■□□□□ 0.4
COL28A1-206ENST00000465339 CFAP53Q96M91 514 aa17.56■□□□□ 0.4
COL28A1-206ENST00000465339 PSDA5PKW4 1024 aaPredicted RBP17.55■□□□□ 0.4
COL28A1-206ENST00000465339 PHKG2P15735 406 aa17.55■□□□□ 0.4
COL28A1-206ENST00000465339 PPP2R1AP30153 589 aa17.55■□□□□ 0.4
COL28A1-206ENST00000465339 R3HDM1Q15032 1099 aaKnown RBP17.55■□□□□ 0.4
COL28A1-206ENST00000465339 ITGB4P16144 1822 aa17.55■□□□□ 0.4
COL28A1-206ENST00000465339 DDX10Q13206 875 aaKnown RBP17.54■□□□□ 0.4
COL28A1-206ENST00000465339 COL3A1P02461 1466 aaPredicted RBP17.53■□□□□ 0.4
COL28A1-206ENST00000465339 HSP90AB1P08238 724 aaKnown RBP17.53■□□□□ 0.4
COL28A1-206ENST00000465339 SLC27A3Q5K4L6 730 aa17.52■□□□□ 0.4
COL28A1-206ENST00000465339 MPRIPQ6WCQ1 1025 aa17.52■□□□□ 0.4
COL28A1-206ENST00000465339 LY75O60449 1722 aa17.51■□□□□ 0.39
COL28A1-206ENST00000465339 HMOX1P09601 288 aa17.51■□□□□ 0.39
COL28A1-206ENST00000465339 ZNF530Q6P9A1 599 aaPredicted RBP17.51■□□□□ 0.39
COL28A1-206ENST00000465339 NUDCQ9Y266 331 aa17.51■□□□□ 0.39
COL28A1-206ENST00000465339 TOGARAM1Q9Y4F4 1720 aa17.51■□□□□ 0.39
COL28A1-206ENST00000465339 U2SURPO15042 1029 aaKnown RBP17.5■□□□□ 0.39
COL28A1-206ENST00000465339 HMGB2P26583 209 aaKnown RBP17.5■□□□□ 0.39
COL28A1-206ENST00000465339 C1orf141Q5JVX7 400 aa17.5■□□□□ 0.39
COL28A1-206ENST00000465339 DCAF5Q96JK2 942 aa17.5■□□□□ 0.39
COL28A1-206ENST00000465339 ERVV-2B6SEH9 535 aa17.49■□□□□ 0.39
COL28A1-206ENST00000465339 STK32BQ9NY57 414 aa17.49■□□□□ 0.39
COL28A1-206ENST00000465339 TMOD3Q9NYL9 352 aa17.49■□□□□ 0.39
COL28A1-206ENST00000465339 RALBP1Q15311 655 aa17.48■□□□□ 0.39
COL28A1-206ENST00000465339 PIGBQ92521 554 aa17.48■□□□□ 0.39
COL28A1-206ENST00000465339 SMARCC1Q92922 1105 aaPredicted RBP17.48■□□□□ 0.39
COL28A1-206ENST00000465339 LRRC4BQ9NT99 713 aa17.48■□□□□ 0.39
COL28A1-206ENST00000465339 SLC15A2Q16348 729 aa17.47■□□□□ 0.39
COL28A1-206ENST00000465339 AKAP4Q5JQC9 854 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms