RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 NCOA4Q13772 614 aa11.86□□□□□ -0.51
PTCD3-205ENST00000464541 TSEN34Q9BSV6 310 aaKnown RBP11.86□□□□□ -0.51
PTCD3-205ENST00000464541 NOD1Q9Y239 953 aa11.86□□□□□ -0.51
PTCD3-205ENST00000464541 UPP2O95045 317 aa11.85□□□□□ -0.51
PTCD3-205ENST00000464541 ADD1P35611 737 aaKnown RBP11.85□□□□□ -0.51
PTCD3-205ENST00000464541 CBLBQ13191 982 aa11.85□□□□□ -0.51
PTCD3-205ENST00000464541 OSBPL3Q9H4L5 887 aa11.85□□□□□ -0.51
PTCD3-205ENST00000464541 C1orf115Q9H7X2 142 aa11.85□□□□□ -0.51
PTCD3-205ENST00000464541 ST8SIA5O15466 376 aa11.84□□□□□ -0.51
PTCD3-205ENST00000464541 MRPL14Q6P1L8 145 aaKnown RBP11.84□□□□□ -0.51
PTCD3-205ENST00000464541 TRIM50Q86XT4 487 aa11.84□□□□□ -0.51
PTCD3-205ENST00000464541 SCARF1Q14162 830 aa11.83□□□□□ -0.52
PTCD3-205ENST00000464541 CFAP70Q5T0N1 1121 aa11.83□□□□□ -0.52
PTCD3-205ENST00000464541 ATP5J2-PTCD1G3V325 749 aa11.82□□□□□ -0.52
PTCD3-205ENST00000464541 SUPT5HO00267 1087 aaKnown RBP11.82□□□□□ -0.52
PTCD3-205ENST00000464541 LINC00528Q8N1L1 170 aa11.82□□□□□ -0.52
PTCD3-205ENST00000464541 CCDC82Q8N4S0 544 aa11.82□□□□□ -0.52
PTCD3-205ENST00000464541 ATP13A2Q9NQ11 1180 aa11.82□□□□□ -0.52
PTCD3-205ENST00000464541 GNRH1P01148 92 aa11.81□□□□□ -0.52
PTCD3-205ENST00000464541 LMOD1P29536 600 aaPredicted RBP11.81□□□□□ -0.52
PTCD3-205ENST00000464541 PTGIRP43119 386 aa11.81□□□□□ -0.52
PTCD3-205ENST00000464541 DEPDC4Q8N2C3 294 aa11.81□□□□□ -0.52
PTCD3-205ENST00000464541 ATP1A2P50993 1020 aa11.8□□□□□ -0.52
PTCD3-205ENST00000464541 TRIM46Q7Z4K8 759 aa11.8□□□□□ -0.52
PTCD3-205ENST00000464541 LCE2BO14633 110 aa11.79□□□□□ -0.52
PTCD3-205ENST00000464541 KDF1Q8NAX2 398 aaPredicted RBP11.79□□□□□ -0.52
PTCD3-205ENST00000464541 SENP2Q9HC62 589 aa11.79□□□□□ -0.52
PTCD3-205ENST00000464541 MKRN1Q9UHC7 482 aaKnown RBP11.79□□□□□ -0.52
PTCD3-205ENST00000464541 SPINT1O43278 529 aa11.78□□□□□ -0.52
PTCD3-205ENST00000464541 GTF2IP78347 998 aa11.78□□□□□ -0.52
PTCD3-205ENST00000464541 BMP2P12643 396 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 BMP1P13497 986 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 ESCO1Q5FWF5 840 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 KIFC2Q96AC6 838 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 AGBL1Q96MI9 1066 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 VRTNQ9H8Y1 702 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 PCDHGA11Q9Y5H2 935 aa11.77□□□□□ -0.53
PTCD3-205ENST00000464541 WASLO00401 505 aaPredicted RBP11.76□□□□□ -0.53
PTCD3-205ENST00000464541 RELBQ01201 579 aa11.76□□□□□ -0.53
PTCD3-205ENST00000464541 KANK4Q5T7N3 995 aaPredicted RBP11.76□□□□□ -0.53
PTCD3-205ENST00000464541 DACH1Q9UI36 760 aa11.76□□□□□ -0.53
PTCD3-205ENST00000464541 CLN3Q13286 438 aa11.75□□□□□ -0.53
PTCD3-205ENST00000464541 LARGE2Q8N3Y3 721 aa11.75□□□□□ -0.53
PTCD3-205ENST00000464541 PURBQ96QR8 312 aaKnown RBP11.75□□□□□ -0.53
PTCD3-205ENST00000464541 ZFP42Q96MM3 310 aa11.74□□□□□ -0.53
PTCD3-205ENST00000464541 DNAAF2Q9NVR5 837 aaKnown RBP11.74□□□□□ -0.53
PTCD3-205ENST00000464541 A0A1W2PRU2 124 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 FAM196BA6NMK8 535 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 GPC1P35052 558 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 C6orf118Q5T5N4 469 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 OGFOD1Q8N543 542 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 PBXIP1Q96AQ6 731 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 ARHGEF10LQ9HCE6 1279 aa11.73□□□□□ -0.53
PTCD3-205ENST00000464541 RASA1P20936 1047 aa11.72□□□□□ -0.53
PTCD3-205ENST00000464541 LARP1Q6PKG0 1096 aaKnown RBP11.72□□□□□ -0.53
PTCD3-205ENST00000464541 SIX5Q8N196 739 aa11.72□□□□□ -0.53
PTCD3-205ENST00000464541 XAGE2Q96GT9 111 aa11.72□□□□□ -0.53
PTCD3-205ENST00000464541 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
PTCD3-205ENST00000464541 PPP1R15AO75807 674 aaPredicted RBP11.71□□□□□ -0.53
PTCD3-205ENST00000464541 RFX1P22670 979 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 SCNN1DP51172 638 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 SRPK2P78362 688 aaKnown RBP11.71□□□□□ -0.53
PTCD3-205ENST00000464541 CLDN10P78369 228 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 PSME1Q06323 249 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 TRIM47Q96LD4 638 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 NLRP3Q96P20 1036 aa11.71□□□□□ -0.53
PTCD3-205ENST00000464541 ZNF395Q9H8N7 513 aaPredicted RBP11.71□□□□□ -0.53
PTCD3-205ENST00000464541 SOS2Q07890 1332 aaPredicted RBP11.7□□□□□ -0.54
PTCD3-205ENST00000464541 ZBTB7BO15156 539 aaPredicted RBP11.7□□□□□ -0.54
PTCD3-205ENST00000464541 INHAP05111 366 aa11.7□□□□□ -0.54
PTCD3-205ENST00000464541 GDF10P55107 478 aa11.7□□□□□ -0.54
PTCD3-205ENST00000464541 ETNK1Q9HBU6 452 aa11.7□□□□□ -0.54
PTCD3-205ENST00000464541 TTLL8A6PVC2 850 aa11.69□□□□□ -0.54
PTCD3-205ENST00000464541 MEN1O00255 615 aa11.69□□□□□ -0.54
PTCD3-205ENST00000464541 RNF144AP50876 292 aaPredicted RBP11.69□□□□□ -0.54
PTCD3-205ENST00000464541 CNKSR1Q969H4 720 aa11.69□□□□□ -0.54
PTCD3-205ENST00000464541 INSM2Q96T92 566 aaPredicted RBP11.69□□□□□ -0.54
PTCD3-205ENST00000464541 GMPR2Q9P2T1 348 aaKnown RBP11.69□□□□□ -0.54
PTCD3-205ENST00000464541 RBM19Q9Y4C8 960 aaKnown RBP11.69□□□□□ -0.54
PTCD3-205ENST00000464541 HRH3Q9Y5N1 445 aa11.69□□□□□ -0.54
PTCD3-205ENST00000464541 BACH1O14867 736 aa11.68□□□□□ -0.54
PTCD3-205ENST00000464541 IL2RAP01589 272 aa11.68□□□□□ -0.54
PTCD3-205ENST00000464541 PTK7Q13308 1070 aa11.68□□□□□ -0.54
PTCD3-205ENST00000464541 CCDC102BQ68D86 513 aa11.68□□□□□ -0.54
PTCD3-205ENST00000464541 POLMQ9NP87 494 aaPredicted RBP11.68□□□□□ -0.54
PTCD3-205ENST00000464541 TMEM229AB2RXF0 380 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L15C9J2P7 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L10C9JJH3 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L13C9JLJ4 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L12C9JPN9 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L11C9JVI0 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L21D6R901 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L18D6R9N7 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L22D6RA61 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L17D6RBQ6 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L19D6RCP7 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L20D6RJB6 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 M0R2N6 131 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 USP17L24Q0WX57 530 aa11.67□□□□□ -0.54
PTCD3-205ENST00000464541 ELOAQ14241 798 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms