RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 ARID3CA6NKF2 412 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 SUPT5HO00267 1087 aaKnown RBP8.08□□□□□ -1.12
CLK1-208ENST00000464454 CBLBQ13191 982 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 NCOA4Q13772 614 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 MRPL14Q6P1L8 145 aaKnown RBP8.08□□□□□ -1.12
CLK1-208ENST00000464454 USP17L2Q6R6M4 530 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 USP17L1Q7RTZ2 530 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 TFIP11Q9UBB9 837 aaKnown RBP8.08□□□□□ -1.12
CLK1-208ENST00000464454 NOD1Q9Y239 953 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 ATP5J2-PTCD1G3V325 749 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 SCTRP47872 440 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 TSGA10IPQ3SY00 556 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 TRIM50Q86XT4 487 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 LINC00528Q8N1L1 170 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 ATP13A2Q9NQ11 1180 aa8.07□□□□□ -1.12
CLK1-208ENST00000464454 MAFBQ9Y5Q3 323 aaPredicted RBP8.07□□□□□ -1.12
CLK1-208ENST00000464454 ADD1P35611 737 aaKnown RBP8.06□□□□□ -1.12
CLK1-208ENST00000464454 OSBPL3Q9H4L5 887 aa8.06□□□□□ -1.12
CLK1-208ENST00000464454 SENP2Q9HC62 589 aa8.06□□□□□ -1.12
CLK1-208ENST00000464454 GNRH1P01148 92 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 BMP2P12643 396 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 BMP1P13497 986 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 ATP1A2P50993 1020 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 DEPDC4Q8N2C3 294 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 KIFC2Q96AC6 838 aa8.05□□□□□ -1.12
CLK1-208ENST00000464454 LMOD1P29536 600 aaPredicted RBP8.04□□□□□ -1.12
CLK1-208ENST00000464454 PTGIRP43119 386 aa8.04□□□□□ -1.12
CLK1-208ENST00000464454 RELBQ01201 579 aa8.04□□□□□ -1.12
CLK1-208ENST00000464454 TRIM46Q7Z4K8 759 aa8.04□□□□□ -1.12
CLK1-208ENST00000464454 SPINT1O43278 529 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 GTF2IP78347 998 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 ESCO1Q5FWF5 840 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 CFAP70Q5T0N1 1121 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 TREML4Q6UXN2 200 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 CCDC82Q8N4S0 544 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 AGBL1Q96MI9 1066 aa8.03□□□□□ -1.12
CLK1-208ENST00000464454 PURBQ96QR8 312 aaKnown RBP8.03□□□□□ -1.12
CLK1-208ENST00000464454 C6orf118Q5T5N4 469 aa8.02□□□□□ -1.13
CLK1-208ENST00000464454 MKRN1Q9UHC7 482 aaKnown RBP8.02□□□□□ -1.13
CLK1-208ENST00000464454 PSME1Q06323 249 aa8.01□□□□□ -1.13
CLK1-208ENST00000464454 ZFP42Q96MM3 310 aa8.01□□□□□ -1.13
CLK1-208ENST00000464454 C1orf115Q9H7X2 142 aa8.01□□□□□ -1.13
CLK1-208ENST00000464454 VRTNQ9H8Y1 702 aa8.01□□□□□ -1.13
CLK1-208ENST00000464454 DACH1Q9UI36 760 aa8.01□□□□□ -1.13
CLK1-208ENST00000464454 CLN3Q13286 438 aa8□□□□□ -1.13
CLK1-208ENST00000464454 KDF1Q8NAX2 398 aaPredicted RBP8□□□□□ -1.13
CLK1-208ENST00000464454 TRIM47Q96LD4 638 aa8□□□□□ -1.13
CLK1-208ENST00000464454 NLRP3Q96P20 1036 aa8□□□□□ -1.13
CLK1-208ENST00000464454 ZNF395Q9H8N7 513 aaPredicted RBP8□□□□□ -1.13
CLK1-208ENST00000464454 ARHGEF10LQ9HCE6 1279 aa8□□□□□ -1.13
CLK1-208ENST00000464454 RBM19Q9Y4C8 960 aaKnown RBP8□□□□□ -1.13
CLK1-208ENST00000464454 A0A1W2PRU2 124 aa7.99□□□□□ -1.13
CLK1-208ENST00000464454 MEN1O00255 615 aa7.99□□□□□ -1.13
CLK1-208ENST00000464454 WASLO00401 505 aaPredicted RBP7.99□□□□□ -1.13
CLK1-208ENST00000464454 GPC1P35052 558 aa7.99□□□□□ -1.13
CLK1-208ENST00000464454 LARP1Q6PKG0 1096 aaKnown RBP7.99□□□□□ -1.13
CLK1-208ENST00000464454 LARGE2Q8N3Y3 721 aa7.99□□□□□ -1.13
CLK1-208ENST00000464454 POLMQ9NP87 494 aaPredicted RBP7.99□□□□□ -1.13
CLK1-208ENST00000464454 DNAAF2Q9NVR5 837 aaKnown RBP7.99□□□□□ -1.13
CLK1-208ENST00000464454 GMPR2Q9P2T1 348 aaKnown RBP7.99□□□□□ -1.13
CLK1-208ENST00000464454 PCDHGA11Q9Y5H2 935 aa7.99□□□□□ -1.13
CLK1-208ENST00000464454 TTLL8A6PVC2 850 aa7.98□□□□□ -1.13
CLK1-208ENST00000464454 RASA1P20936 1047 aa7.98□□□□□ -1.13
CLK1-208ENST00000464454 RFX1P22670 979 aa7.98□□□□□ -1.13
CLK1-208ENST00000464454 KANK4Q5T7N3 995 aaPredicted RBP7.98□□□□□ -1.13
CLK1-208ENST00000464454 OGFOD1Q8N543 542 aa7.98□□□□□ -1.13
CLK1-208ENST00000464454 INSM2Q96T92 566 aaPredicted RBP7.98□□□□□ -1.13
CLK1-208ENST00000464454 ESYT1Q9BSJ8 1104 aa7.98□□□□□ -1.13
CLK1-208ENST00000464454 FAM196BA6NMK8 535 aa7.97□□□□□ -1.13
CLK1-208ENST00000464454 GDF10P55107 478 aa7.97□□□□□ -1.13
CLK1-208ENST00000464454 CNKSR1Q969H4 720 aa7.97□□□□□ -1.13
CLK1-208ENST00000464454 PBXIP1Q96AQ6 731 aa7.97□□□□□ -1.13
CLK1-208ENST00000464454 RAB6BQ9NRW1 208 aa7.97□□□□□ -1.13
CLK1-208ENST00000464454 SOS2Q07890 1332 aaPredicted RBP7.97□□□□□ -1.13
CLK1-208ENST00000464454 C11orf95C9JLR9 678 aaPredicted RBP7.96□□□□□ -1.14
CLK1-208ENST00000464454 BACH1O14867 736 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 INHAP05111 366 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 RNF144AP50876 292 aaPredicted RBP7.96□□□□□ -1.14
CLK1-208ENST00000464454 SCNN1DP51172 638 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 CLDN10P78369 228 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 SIX5Q8N196 739 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 XAGE2Q96GT9 111 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 ETNK1Q9HBU6 452 aa7.96□□□□□ -1.14
CLK1-208ENST00000464454 POTECB2RU33 542 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L15C9J2P7 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L10C9JJH3 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L13C9JLJ4 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L12C9JPN9 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L11C9JVI0 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L21D6R901 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L18D6R9N7 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L22D6RA61 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L17D6RBQ6 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L19D6RCP7 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 USP17L20D6RJB6 530 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 MAN1A2O60476 641 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 PPP1R15AO75807 674 aaPredicted RBP7.95□□□□□ -1.14
CLK1-208ENST00000464454 IL2RAP01589 272 aa7.95□□□□□ -1.14
CLK1-208ENST00000464454 GTF2E1P29083 439 aaPredicted RBP7.95□□□□□ -1.14
CLK1-208ENST00000464454 CTSOP43234 321 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms