RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, human

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HPS4-208	ENST00000464362	KDM6B	O15054	1643 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	CEP170	Q5SW79	1584 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	UQCRHL	A0A096LP55	91 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	UQCRH	P07919	91 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	SDS	P20132	328 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	EVA1C	P58658	441 aa		10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	ZC3H6	P61129	1189 aa	Known RBP	10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	ZNF771	Q7L3S4	317 aa	Predicted RBP	10.87	□□□□□ -0.67
HPS4-208	ENST00000464362	HDAC1	Q13547	482 aa	Predicted RBP	10.86	□□□□□ -0.67
HPS4-208	ENST00000464362	PRPF40B	Q6NWY9	871 aa	Known RBP	10.86	□□□□□ -0.67
HPS4-208	ENST00000464362	NFXL1	Q6ZNB6	911 aa		10.86	□□□□□ -0.67
HPS4-208	ENST00000464362	USP25	Q9UHP3	1055 aa		10.86	□□□□□ -0.67
HPS4-208	ENST00000464362	WASL	O00401	505 aa	Predicted RBP	10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	TRDN	Q13061	729 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	CPLX2	Q6PUV4	134 aa	Known RBP	10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	RALYL	Q86SE5	291 aa	Known RBP	10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	BOLA2	Q9H3K6	86 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	CHD1	O14646	1710 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	ABCC11	Q96J66	1382 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	TCEANC2	Q96MN5	208 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	CD109	Q6YHK3	1445 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	SYNE3	Q6ZMZ3	975 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	POLK	Q9UBT6	870 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	A2M	P01023	1474 aa		10.85	□□□□□ -0.67
HPS4-208	ENST00000464362	PSMA5	P28066	241 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	PDE4C	Q08493	712 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	FLII	Q13045	1269 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	MPRIP	Q6WCQ1	1025 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	ZGPAT	Q8N5A5	531 aa	Known RBP	10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	JARID2	Q92833	1246 aa	Predicted RBP	10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	PDRG1	Q9NUG6	133 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	TPD52L1	Q16890	204 aa	Predicted RBP	10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	BLOC1S2	Q6QNY1	142 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	FILIP1	Q7Z7B0	1213 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	ZBTB40	Q9NUA8	1239 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	BTBD11	A6QL63	1104 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	GNAT3	A8MTJ3	354 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	MTMR7	Q9Y216	660 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	FANCA	O15360	1455 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	FOXO3	O43524	673 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	TTC22	Q5TAA0	569 aa		10.84	□□□□□ -0.67
HPS4-208	ENST00000464362	VAMP4	O75379	141 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	TPM2	P07951	284 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	TNMD	Q9H2S6	317 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	TFIP11	Q9UBB9	837 aa	Known RBP	10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	KIN	O60870	393 aa	Known RBP	10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	KRT85	P78386	507 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	AKAP17A	Q02040	695 aa	Known RBP	10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	TRIM29	Q14134	588 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	PDC	P20941	246 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	CHMP4C	Q96CF2	233 aa		10.83	□□□□□ -0.68
HPS4-208	ENST00000464362	ME1	P48163	572 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	SMC5	Q8IY18	1101 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	CKAP2L	Q8IYA6	745 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	ZNF830	Q96NB3	372 aa	Predicted RBP	10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	POLR3A	O14802	1390 aa	Predicted RBP	10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	CCDC34	Q96HJ3	373 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	ZMYND15	Q9H091	742 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	CLSTN1	O94985	981 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	SMC2	O95347	1197 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	CCDC192	P0DO97	292 aa		10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.82	□□□□□ -0.68
HPS4-208	ENST00000464362	KDM5B	Q9UGL1	1544 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	GUCY1B3	Q02153	619 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	RRP12	Q5JTH9	1297 aa	Known RBP	10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	MRPL50	Q8N5N7	158 aa	Known RBP	10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	PRDM10	Q9NQV6	1147 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	TTLL5	Q6EMB2	1281 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	PDILT	Q8N807	584 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	TMX3	Q96JJ7	454 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	RAB11FIP3	O75154	756 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	KIF1BP	Q96EK5	621 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	SPATA32	Q96LK8	384 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	PI4KAP2	A4QPH2	592 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	PPP1R42	Q7Z4L9	355 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	FAM177A1	Q8N128	213 aa	Predicted RBP	10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	PI4KAP1	Q8N8J0	262 aa		10.81	□□□□□ -0.68
HPS4-208	ENST00000464362	TPM3	P06753	285 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	HCLS1	P14317	486 aa	Predicted RBP	10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	TNNT3	P45378	269 aa	Predicted RBP	10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	STK38	Q15208	465 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	STRN4	Q9NRL3	753 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	DISP1	Q96F81	1524 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	ANKRD36B	Q8N2N9	1353 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	PTCD1	O75127	700 aa	Known RBP	10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	KLHL40	Q2TBA0	621 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	ZSCAN23	Q3MJ62	389 aa		10.8	□□□□□ -0.68
HPS4-208	ENST00000464362	UHRF1BP1	Q6BDS2	1440 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	ACE	P12821	1306 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	PDE1A	P54750	535 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	NECAB1	Q8N987	351 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	PIK3C2G	O75747	1445 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	NUP62CL	Q9H1M0	184 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	TRIM35	Q9UPQ4	493 aa		10.79	□□□□□ -0.68
HPS4-208	ENST00000464362	PRIM1	P49642	420 aa	Known RBP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms