RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 ZNF521Q96K83 1311 aa12.99□□□□□ -0.33
PTPRD-207ENST00000463477 FAM182BQ5T319 152 aa12.99□□□□□ -0.33
PTPRD-207ENST00000463477 DISP2A7MBM2 1401 aa12.98□□□□□ -0.33
PTPRD-207ENST00000463477 PPM1GO15355 546 aaPredicted RBP12.98□□□□□ -0.33
PTPRD-207ENST00000463477 IL2RBP14784 551 aa12.98□□□□□ -0.33
PTPRD-207ENST00000463477 TNNT2P45379 298 aaPredicted RBP12.98□□□□□ -0.33
PTPRD-207ENST00000463477 NBPF6Q5VWK0 638 aa12.97□□□□□ -0.33
PTPRD-207ENST00000463477 CCDC136Q96JN2 1154 aa12.97□□□□□ -0.33
PTPRD-207ENST00000463477 NBPF4Q96M43 638 aa12.97□□□□□ -0.33
PTPRD-207ENST00000463477 PARP4Q9UKK3 1724 aaKnown RBP12.96□□□□□ -0.34
PTPRD-207ENST00000463477 SF3B2Q13435 895 aaKnown RBP12.96□□□□□ -0.34
PTPRD-207ENST00000463477 ANKRD26Q9UPS8 1709 aa12.95□□□□□ -0.34
PTPRD-207ENST00000463477 MARCH10Q8NA82 808 aaPredicted RBP12.95□□□□□ -0.34
PTPRD-207ENST00000463477 MAP2P11137 1827 aaKnown RBP12.94□□□□□ -0.34
PTPRD-207ENST00000463477 CDCA7LQ96GN5 454 aa12.94□□□□□ -0.34
PTPRD-207ENST00000463477 PEAK1Q9H792 1746 aa12.93□□□□□ -0.34
PTPRD-207ENST00000463477 BCL9O00512 1426 aa12.93□□□□□ -0.34
PTPRD-207ENST00000463477 TRIM37O94972 964 aa12.93□□□□□ -0.34
PTPRD-207ENST00000463477 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
PTPRD-207ENST00000463477 OVOS2A0A0G2JMS6 1433 aa12.92□□□□□ -0.34
PTPRD-207ENST00000463477 EIF4A2Q14240 407 aaKnown RBP12.92□□□□□ -0.34
PTPRD-207ENST00000463477 TRMT2AQ8IZ69 625 aaKnown RBP12.92□□□□□ -0.34
PTPRD-207ENST00000463477 EYA1Q99502 592 aa12.92□□□□□ -0.34
PTPRD-207ENST00000463477 BAG6P46379 1132 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 GOLGA2Q08379 1002 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 DUSP27Q5VZP5 1158 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 DEFB132Q7Z7B7 95 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 RAPGEF4Q8WZA2 1011 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 ANP32EQ9BTT0 268 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 LRRC37A3O60309 1634 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
PTPRD-207ENST00000463477 SENP3-EIF4A1A0A087X0R7 540 aa12.9□□□□□ -0.34
PTPRD-207ENST00000463477 TATP17735 454 aaPredicted RBP12.9□□□□□ -0.34
PTPRD-207ENST00000463477 MTHFSP49914 203 aa12.9□□□□□ -0.34
PTPRD-207ENST00000463477 NCBP3Q53F19 620 aaKnown RBP12.9□□□□□ -0.34
PTPRD-207ENST00000463477 USHBP1Q8N6Y0 703 aa12.9□□□□□ -0.34
PTPRD-207ENST00000463477 ZCRB1Q8TBF4 217 aaKnown RBP12.9□□□□□ -0.34
PTPRD-207ENST00000463477 SALL2Q9Y467 1007 aaPredicted RBP12.9□□□□□ -0.34
PTPRD-207ENST00000463477 BCL11BQ9C0K0 894 aaPredicted RBP12.89□□□□□ -0.35
PTPRD-207ENST00000463477 WNK3Q9BYP7 1800 aa12.89□□□□□ -0.35
PTPRD-207ENST00000463477 APBA3O96018 575 aa12.89□□□□□ -0.35
PTPRD-207ENST00000463477 SLFN5Q08AF3 891 aa12.89□□□□□ -0.35
PTPRD-207ENST00000463477 EXOC6Q8TAG9 804 aa12.89□□□□□ -0.35
PTPRD-207ENST00000463477 DDX54Q8TDD1 881 aaKnown RBP12.89□□□□□ -0.35
PTPRD-207ENST00000463477 NCAPD2Q15021 1401 aa12.89□□□□□ -0.35
PTPRD-207ENST00000463477 IGSF1Q8N6C5 1336 aa12.88□□□□□ -0.35
PTPRD-207ENST00000463477 IL13P35225 146 aa12.87□□□□□ -0.35
PTPRD-207ENST00000463477 EN1Q05925 392 aaPredicted RBP12.87□□□□□ -0.35
PTPRD-207ENST00000463477 CAMKK2Q96RR4 588 aa12.87□□□□□ -0.35
PTPRD-207ENST00000463477 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.87□□□□□ -0.35
PTPRD-207ENST00000463477 RGPD2P0DJD1 1756 aa12.87□□□□□ -0.35
PTPRD-207ENST00000463477 MEGF6O75095 1541 aa12.87□□□□□ -0.35
PTPRD-207ENST00000463477 PLSCR1O15162 318 aa12.86□□□□□ -0.35
PTPRD-207ENST00000463477 E9PSI1 815 aa12.86□□□□□ -0.35
PTPRD-207ENST00000463477 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.86□□□□□ -0.35
PTPRD-207ENST00000463477 RGPD1P0DJD0 1748 aa12.85□□□□□ -0.35
PTPRD-207ENST00000463477 KCNQ2O43526 872 aa12.85□□□□□ -0.35
PTPRD-207ENST00000463477 PTF1AQ7RTS3 328 aa12.85□□□□□ -0.35
PTPRD-207ENST00000463477 PLEKHG2Q9H7P9 1386 aa12.85□□□□□ -0.35
PTPRD-207ENST00000463477 TCERG1O14776 1098 aaKnown RBP12.84□□□□□ -0.35
PTPRD-207ENST00000463477 EZH2Q15910 746 aaKnown RBP12.84□□□□□ -0.35
PTPRD-207ENST00000463477 SPG7Q9UQ90 795 aa12.84□□□□□ -0.35
PTPRD-207ENST00000463477 APAF1O14727 1248 aa12.83□□□□□ -0.35
PTPRD-207ENST00000463477 CYP27B1O15528 508 aa12.83□□□□□ -0.35
PTPRD-207ENST00000463477 DIAPH1O60610 1272 aaKnown RBP12.83□□□□□ -0.35
PTPRD-207ENST00000463477 MS4A1P11836 297 aa12.83□□□□□ -0.35
PTPRD-207ENST00000463477 ACSBG1Q96GR2 724 aa12.83□□□□□ -0.35
PTPRD-207ENST00000463477 PCDH11XQ9BZA7 1347 aa12.83□□□□□ -0.36
PTPRD-207ENST00000463477 PCDH11YQ9BZA8 1340 aa12.83□□□□□ -0.36
PTPRD-207ENST00000463477 SBF2Q86WG5 1849 aa12.82□□□□□ -0.36
PTPRD-207ENST00000463477 NKX1-1Q15270 411 aaPredicted RBP12.82□□□□□ -0.36
PTPRD-207ENST00000463477 SULT6B1Q6IMI4 303 aa12.82□□□□□ -0.36
PTPRD-207ENST00000463477 CFAP53Q96M91 514 aa12.82□□□□□ -0.36
PTPRD-207ENST00000463477 TNS1Q9HBL0 1735 aaKnown RBP12.82□□□□□ -0.36
PTPRD-207ENST00000463477 MSH5O43196 834 aa12.81□□□□□ -0.36
PTPRD-207ENST00000463477 KDRP35968 1356 aa12.81□□□□□ -0.36
PTPRD-207ENST00000463477 PRIM1P49642 420 aaKnown RBP12.81□□□□□ -0.36
PTPRD-207ENST00000463477 CCDC27Q2M243 656 aa12.81□□□□□ -0.36
PTPRD-207ENST00000463477 RUNDC1Q96C34 613 aa12.81□□□□□ -0.36
PTPRD-207ENST00000463477 CRBNQ96SW2 442 aa12.81□□□□□ -0.36
PTPRD-207ENST00000463477 AMOTQ4VCS5 1084 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 PLEKHO1Q53GL0 409 aaPredicted RBP12.8□□□□□ -0.36
PTPRD-207ENST00000463477 AEBP1Q8IUX7 1158 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 CCDC146Q8IYE0 955 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 IFNL2Q8IZJ0 200 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 PROM2Q8N271 834 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 KAT6BQ8WYB5 2073 aa12.8□□□□□ -0.36
PTPRD-207ENST00000463477 COL3A1P02461 1466 aaPredicted RBP12.79□□□□□ -0.36
PTPRD-207ENST00000463477 PLIN1O60240 522 aa12.79□□□□□ -0.36
PTPRD-207ENST00000463477 PHKG2P15735 406 aa12.79□□□□□ -0.36
PTPRD-207ENST00000463477 WDR63Q8IWG1 891 aa12.79□□□□□ -0.36
PTPRD-207ENST00000463477 WWC1Q8IX03 1113 aa12.78□□□□□ -0.36
PTPRD-207ENST00000463477 SYTL4Q96C24 671 aaPredicted RBP12.78□□□□□ -0.36
PTPRD-207ENST00000463477 SHANK3Q9BYB0 1731 aa12.78□□□□□ -0.36
PTPRD-207ENST00000463477 KDM2BQ8NHM5 1336 aa12.77□□□□□ -0.36
PTPRD-207ENST00000463477 TXNRD1Q16881 649 aa12.77□□□□□ -0.36
PTPRD-207ENST00000463477 HSP90AB1P08238 724 aaKnown RBP12.77□□□□□ -0.37
PTPRD-207ENST00000463477 HMOX1P09601 288 aa12.77□□□□□ -0.37
PTPRD-207ENST00000463477 NBPF14Q5TI25 921 aa12.77□□□□□ -0.37
PTPRD-207ENST00000463477 SPINK5Q9NQ38 1064 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms