RNA–Protein interactions for RNA: ENST00000460431.1

SMARCD3-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 673 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-204ENST00000460431 NUP188Q5SRE5 1749 aa22.45■■□□□ 1.18
SMARCD3-204ENST00000460431 NPC1L1Q9UHC9 1359 aa22.44■■□□□ 1.18
SMARCD3-204ENST00000460431 PROM2Q8N271 834 aa22.43■■□□□ 1.18
SMARCD3-204ENST00000460431 MEGF6O75095 1541 aa22.42■■□□□ 1.18
SMARCD3-204ENST00000460431 EIF4A2Q14240 407 aaKnown RBP22.41■■□□□ 1.18
SMARCD3-204ENST00000460431 CC2D1BQ5T0F9 858 aaKnown RBP22.41■■□□□ 1.18
SMARCD3-204ENST00000460431 ZCRB1Q8TBF4 217 aaKnown RBP22.41■■□□□ 1.18
SMARCD3-204ENST00000460431 RAPGEF4Q8WZA2 1011 aa22.41■■□□□ 1.18
SMARCD3-204ENST00000460431 EYA1Q99502 592 aa22.41■■□□□ 1.18
SMARCD3-204ENST00000460431 NCAPD2Q15021 1401 aa22.4■■□□□ 1.18
SMARCD3-204ENST00000460431 TATP17735 454 aaPredicted RBP22.39■■□□□ 1.17
SMARCD3-204ENST00000460431 DDX54Q8TDD1 881 aaKnown RBP22.39■■□□□ 1.17
SMARCD3-204ENST00000460431 SHANK3Q9BYB0 1731 aa22.39■■□□□ 1.17
SMARCD3-204ENST00000460431 KCNQ2O43526 872 aa22.38■■□□□ 1.17
SMARCD3-204ENST00000460431 RGPD3A6NKT7 1758 aaPredicted RBP22.38■■□□□ 1.17
SMARCD3-204ENST00000460431 RGPD4Q7Z3J3 1758 aa22.38■■□□□ 1.17
SMARCD3-204ENST00000460431 ANO8Q9HCE9 1232 aaPredicted RBP22.37■■□□□ 1.17
SMARCD3-204ENST00000460431 ZEB1P37275 1124 aaPredicted RBP22.36■■□□□ 1.17
SMARCD3-204ENST00000460431 MTHFSP49914 203 aa22.35■■□□□ 1.17
SMARCD3-204ENST00000460431 TXNRD1Q16881 649 aa22.35■■□□□ 1.17
SMARCD3-204ENST00000460431 NHSQ6T4R5 1651 aa22.34■■□□□ 1.17
SMARCD3-204ENST00000460431 IGSF1Q8N6C5 1336 aa22.33■■□□□ 1.17
SMARCD3-204ENST00000460431 ACSBG1Q96GR2 724 aa22.33■■□□□ 1.17
SMARCD3-204ENST00000460431 PKD1L3Q7Z443 1732 aa22.31■■□□□ 1.16
SMARCD3-204ENST00000460431 CNGB1Q14028 1251 aaPredicted RBP22.31■■□□□ 1.16
SMARCD3-204ENST00000460431 SPON1Q9HCB6 807 aa22.31■■□□□ 1.16
SMARCD3-204ENST00000460431 IL13P35225 146 aa22.3■■□□□ 1.16
SMARCD3-204ENST00000460431 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.3■■□□□ 1.16
SMARCD3-204ENST00000460431 PCDH11XQ9BZA7 1347 aa22.3■■□□□ 1.16
SMARCD3-204ENST00000460431 PCDH11YQ9BZA8 1340 aa22.3■■□□□ 1.16
SMARCD3-204ENST00000460431 PDGFDQ9GZP0 370 aaPredicted RBP22.29■■□□□ 1.16
SMARCD3-204ENST00000460431 BTAF1O14981 1849 aa22.29■■□□□ 1.16
SMARCD3-204ENST00000460431 CYP27B1O15528 508 aa22.28■■□□□ 1.16
SMARCD3-204ENST00000460431 SPG7Q9UQ90 795 aa22.28■■□□□ 1.16
SMARCD3-204ENST00000460431 PLEKHG2Q9H7P9 1386 aa22.26■■□□□ 1.15
SMARCD3-204ENST00000460431 DOT1LQ8TEK3 1739 aa22.26■■□□□ 1.15
SMARCD3-204ENST00000460431 PRIM1P49642 420 aaKnown RBP22.26■■□□□ 1.15
SMARCD3-204ENST00000460431 SLC15A2Q16348 729 aa22.26■■□□□ 1.15
SMARCD3-204ENST00000460431 STK32BQ9NY57 414 aa22.25■■□□□ 1.15
SMARCD3-204ENST00000460431 DIAPH1O60610 1272 aaKnown RBP22.23■■□□□ 1.15
SMARCD3-204ENST00000460431 NKX1-1Q15270 411 aaPredicted RBP22.23■■□□□ 1.15
SMARCD3-204ENST00000460431 SULT6B1Q6IMI4 303 aa22.23■■□□□ 1.15
SMARCD3-204ENST00000460431 AEBP1Q8IUX7 1158 aa22.23■■□□□ 1.15
SMARCD3-204ENST00000460431 KDRP35968 1356 aa22.23■■□□□ 1.15
SMARCD3-204ENST00000460431 CASZ1Q86V15 1759 aa22.22■■□□□ 1.15
SMARCD3-204ENST00000460431 SYTL4Q96C24 671 aaPredicted RBP22.22■■□□□ 1.15
SMARCD3-204ENST00000460431 PPP1R1BQ9UD71 204 aaPredicted RBP22.21■■□□□ 1.15
SMARCD3-204ENST00000460431 ITGB4P16144 1822 aa22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 ZBTB7AO95365 584 aa22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 PPP2R1AP30153 589 aa22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 PLEKHO1Q53GL0 409 aaPredicted RBP22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 IFNL2Q8IZJ0 200 aa22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 LRRC4BQ9NT99 713 aa22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 COL3A1P02461 1466 aaPredicted RBP22.2■■□□□ 1.14
SMARCD3-204ENST00000460431 PHKG2P15735 406 aa22.19■■□□□ 1.14
SMARCD3-204ENST00000460431 PTGER2P43116 358 aa22.19■■□□□ 1.14
SMARCD3-204ENST00000460431 DDX10Q13206 875 aaKnown RBP22.19■■□□□ 1.14
SMARCD3-204ENST00000460431 AMOTQ4VCS5 1084 aa22.19■■□□□ 1.14
SMARCD3-204ENST00000460431 TOGARAM1Q9Y4F4 1720 aa22.17■■□□□ 1.14
SMARCD3-204ENST00000460431 ATF5Q9Y2D1 282 aaPredicted RBP22.17■■□□□ 1.14
SMARCD3-204ENST00000460431 PAPPAQ13219 1627 aa22.16■■□□□ 1.14
SMARCD3-204ENST00000460431 HMOX1P09601 288 aa22.15■■□□□ 1.14
SMARCD3-204ENST00000460431 ZNF827Q17R98 1081 aa22.15■■□□□ 1.14
SMARCD3-204ENST00000460431 CFAP53Q96M91 514 aa22.15■■□□□ 1.14
SMARCD3-204ENST00000460431 LY75O60449 1722 aa22.14■■□□□ 1.14
SMARCD3-204ENST00000460431 SLC27A3Q5K4L6 730 aa22.14■■□□□ 1.13
SMARCD3-204ENST00000460431 MPRIPQ6WCQ1 1025 aa22.14■■□□□ 1.13
SMARCD3-204ENST00000460431 MTFR1LQ9H019 292 aa22.14■■□□□ 1.13
SMARCD3-204ENST00000460431 ZNF530Q6P9A1 599 aaPredicted RBP22.13■■□□□ 1.13
SMARCD3-204ENST00000460431 SGIP1Q9BQI5 828 aa22.13■■□□□ 1.13
SMARCD3-204ENST00000460431 HSP90AB1P08238 724 aaKnown RBP22.12■■□□□ 1.13
SMARCD3-204ENST00000460431 AKT1S1Q96B36 256 aa22.12■■□□□ 1.13
SMARCD3-204ENST00000460431 U2SURPO15042 1029 aaKnown RBP22.11■■□□□ 1.13
SMARCD3-204ENST00000460431 PIGBQ92521 554 aa22.11■■□□□ 1.13
SMARCD3-204ENST00000460431 DCAF5Q96JK2 942 aa22.11■■□□□ 1.13
SMARCD3-204ENST00000460431 KCNQ4P56696 695 aa22.1■■□□□ 1.13
SMARCD3-204ENST00000460431 ERVV-2B6SEH9 535 aa22.09■■□□□ 1.13
SMARCD3-204ENST00000460431 C1orf141Q5JVX7 400 aa22.09■■□□□ 1.13
SMARCD3-204ENST00000460431 NUDCQ9Y266 331 aa22.09■■□□□ 1.13
SMARCD3-204ENST00000460431 RALBP1Q15311 655 aa22.08■■□□□ 1.13
SMARCD3-204ENST00000460431 TMOD3Q9NYL9 352 aa22.08■■□□□ 1.13
SMARCD3-204ENST00000460431 SMARCC1Q92922 1105 aaPredicted RBP22.07■■□□□ 1.12
SMARCD3-204ENST00000460431 KDM6AO15550 1401 aaPredicted RBP22.06■■□□□ 1.12
SMARCD3-204ENST00000460431 AKAP4Q5JQC9 854 aa22.06■■□□□ 1.12
SMARCD3-204ENST00000460431 SCN11AQ9UI33 1791 aa22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 PALLDQ8WX93 1383 aa22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 MTHFSDQ2M296 383 aaKnown RBP22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 SYT17Q9BSW7 474 aa22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 FHDC1Q9C0D6 1143 aaPredicted RBP22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 CCNL1Q9UK58 526 aaPredicted RBP22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 VIRMAQ69YN4 1812 aaKnown RBP22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 PNPLA7Q6ZV29 1317 aa22.05■■□□□ 1.12
SMARCD3-204ENST00000460431 SLC16A10Q8TF71 515 aa22.04■■□□□ 1.12
SMARCD3-204ENST00000460431 RSPH6AQ9H0K4 717 aa22.03■■□□□ 1.12
SMARCD3-204ENST00000460431 ASAP1Q9ULH1 1129 aa22.03■■□□□ 1.12
SMARCD3-204ENST00000460431 TAF1LQ8IZX4 1826 aa22.03■■□□□ 1.12
SMARCD3-204ENST00000460431 DCAF8L1A6NGE4 600 aa22.02■■□□□ 1.12
SMARCD3-204ENST00000460431 U2AF1L5P0DN76 240 aaPredicted RBP22.02■■□□□ 1.12
SMARCD3-204ENST00000460431 U2AF1Q01081 240 aaKnown RBP eCLIP22.02■■□□□ 1.12
SMARCD3-204ENST00000460431 ARXQ96QS3 562 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms