RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 RXRBP28702 533 aa16.28■□□□□ 0.2
HDAC4-206ENST00000460235 MYT1Q01538 1121 aa16.28■□□□□ 0.2
HDAC4-206ENST00000460235 LMOD3Q0VAK6 560 aa16.28■□□□□ 0.2
HDAC4-206ENST00000460235 USHBP1Q8N6Y0 703 aa16.28■□□□□ 0.2
HDAC4-206ENST00000460235 HSP90AB1P08238 724 aaKnown RBP16.27■□□□□ 0.2
HDAC4-206ENST00000460235 NCBP3Q53F19 620 aaKnown RBP16.27■□□□□ 0.2
HDAC4-206ENST00000460235 C1orf141Q5JVX7 400 aa16.27■□□□□ 0.2
HDAC4-206ENST00000460235 ZCRB1Q8TBF4 217 aaKnown RBP16.27■□□□□ 0.2
HDAC4-206ENST00000460235 DDB1Q16531 1140 aa16.26■□□□□ 0.19
HDAC4-206ENST00000460235 AEBP1Q8IUX7 1158 aa16.26■□□□□ 0.19
HDAC4-206ENST00000460235 RGPD1P0DJD0 1748 aa16.25■□□□□ 0.19
HDAC4-206ENST00000460235 RTF1Q92541 710 aaKnown RBP16.25■□□□□ 0.19
HDAC4-206ENST00000460235 PCDH11XQ9BZA7 1347 aa16.24■□□□□ 0.19
HDAC4-206ENST00000460235 PCDH11YQ9BZA8 1340 aa16.24■□□□□ 0.19
HDAC4-206ENST00000460235 HTATSF1O43719 755 aaKnown RBP16.24■□□□□ 0.19
HDAC4-206ENST00000460235 ONECUT3O60422 494 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-206ENST00000460235 PDE3BQ13370 1112 aa16.24■□□□□ 0.19
HDAC4-206ENST00000460235 FAM98CQ17RN3 349 aaKnown RBP16.24■□□□□ 0.19
HDAC4-206ENST00000460235 PLEKHF1Q96S99 279 aa16.24■□□□□ 0.19
HDAC4-206ENST00000460235 OVOS2A0A0G2JMS6 1433 aa16.23■□□□□ 0.19
HDAC4-206ENST00000460235 CALD1Q05682 793 aaKnown RBP16.23■□□□□ 0.19
HDAC4-206ENST00000460235 NFE2L2Q16236 605 aa16.23■□□□□ 0.19
HDAC4-206ENST00000460235 IFNL2Q8IZJ0 200 aa16.23■□□□□ 0.19
HDAC4-206ENST00000460235 AKAP4Q5JQC9 854 aa16.22■□□□□ 0.19
HDAC4-206ENST00000460235 ZNF530Q6P9A1 599 aaPredicted RBP16.22■□□□□ 0.19
HDAC4-206ENST00000460235 CCDC146Q8IYE0 955 aa16.21■□□□□ 0.19
HDAC4-206ENST00000460235 PARP4Q9UKK3 1724 aaKnown RBP16.21■□□□□ 0.19
HDAC4-206ENST00000460235 DISP2A7MBM2 1401 aa16.2■□□□□ 0.18
HDAC4-206ENST00000460235 GNAT3A8MTJ3 354 aa16.2■□□□□ 0.18
HDAC4-206ENST00000460235 APAF1O14727 1248 aa16.2■□□□□ 0.18
HDAC4-206ENST00000460235 TMPOP42166 694 aaKnown RBP16.2■□□□□ 0.18
HDAC4-206ENST00000460235 RIPK4P57078 832 aa16.2■□□□□ 0.18
HDAC4-206ENST00000460235 MTHFSDQ2M296 383 aaKnown RBP16.19■□□□□ 0.18
HDAC4-206ENST00000460235 SEPT12Q8IYM1 358 aa16.19■□□□□ 0.18
HDAC4-206ENST00000460235 PHACTR3Q96KR7 559 aa16.19■□□□□ 0.18
HDAC4-206ENST00000460235 RGPD2P0DJD1 1756 aa16.18■□□□□ 0.18
HDAC4-206ENST00000460235 CCDC27Q2M243 656 aa16.18■□□□□ 0.18
HDAC4-206ENST00000460235 DDX54Q8TDD1 881 aaKnown RBP16.18■□□□□ 0.18
HDAC4-206ENST00000460235 DCAF5Q96JK2 942 aa16.18■□□□□ 0.18
HDAC4-206ENST00000460235 MEGF6O75095 1541 aa16.18■□□□□ 0.18
HDAC4-206ENST00000460235 TNS2Q63HR2 1409 aa16.18■□□□□ 0.18
HDAC4-206ENST00000460235 MAP3K5Q99683 1374 aa16.17■□□□□ 0.18
HDAC4-206ENST00000460235 PHKG2P15735 406 aa16.16■□□□□ 0.18
HDAC4-206ENST00000460235 HNRNPUQ00839 825 aaKnown RBP eCLIP16.16■□□□□ 0.18
HDAC4-206ENST00000460235 NEUROD2Q15784 382 aa16.16■□□□□ 0.18
HDAC4-206ENST00000460235 RGS17Q9UGC6 210 aaPredicted RBP16.16■□□□□ 0.18
HDAC4-206ENST00000460235 GLI3P10071 1580 aa16.15■□□□□ 0.18
HDAC4-206ENST00000460235 NKX1-1Q15270 411 aaPredicted RBP16.15■□□□□ 0.18
HDAC4-206ENST00000460235 POTEAQ6S8J7 498 aa16.15■□□□□ 0.18
HDAC4-206ENST00000460235 KRT27Q7Z3Y8 459 aa16.15■□□□□ 0.18
HDAC4-206ENST00000460235 ERVV-2B6SEH9 535 aa16.14■□□□□ 0.17
HDAC4-206ENST00000460235 TEFQ10587 303 aa16.14■□□□□ 0.17
HDAC4-206ENST00000460235 FAM196AQ6ZSG2 479 aa16.13■□□□□ 0.17
HDAC4-206ENST00000460235 WDR63Q8IWG1 891 aa16.13■□□□□ 0.17
HDAC4-206ENST00000460235 PKD1L3Q7Z443 1732 aa16.12■□□□□ 0.17
HDAC4-206ENST00000460235 CYP27B1O15528 508 aa16.12■□□□□ 0.17
HDAC4-206ENST00000460235 HMGB2P26583 209 aaKnown RBP16.12■□□□□ 0.17
HDAC4-206ENST00000460235 RRP7AQ9Y3A4 280 aaKnown RBP16.12■□□□□ 0.17
HDAC4-206ENST00000460235 WNK3Q9BYP7 1800 aa16.11■□□□□ 0.17
HDAC4-206ENST00000460235 CABP4P57796 275 aa16.11■□□□□ 0.17
HDAC4-206ENST00000460235 BABAM1Q9NWV8 329 aa16.11■□□□□ 0.17
HDAC4-206ENST00000460235 THSD7AQ9UPZ6 1657 aa16.11■□□□□ 0.17
HDAC4-206ENST00000460235 RNMTO43148 476 aaKnown RBP16.1■□□□□ 0.17
HDAC4-206ENST00000460235 MPRIPQ6WCQ1 1025 aa16.1■□□□□ 0.17
HDAC4-206ENST00000460235 WWC1Q8IX03 1113 aa16.1■□□□□ 0.17
HDAC4-206ENST00000460235 IL16Q14005 1332 aa16.1■□□□□ 0.17
HDAC4-206ENST00000460235 BCL9O00512 1426 aa16.1■□□□□ 0.17
HDAC4-206ENST00000460235 GNAI1P63096 354 aa16.09■□□□□ 0.17
HDAC4-206ENST00000460235 MARCH10Q8NA82 808 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-206ENST00000460235 ZBED9Q6R2W3 1325 aa16.09■□□□□ 0.17
HDAC4-206ENST00000460235 GOLGA2Q08379 1002 aa16.08■□□□□ 0.16
HDAC4-206ENST00000460235 TAF7Q15545 349 aaPredicted RBP16.08■□□□□ 0.16
HDAC4-206ENST00000460235 CHMP4AQ9BY43 222 aa16.08■□□□□ 0.16
HDAC4-206ENST00000460235 MYH16Q9H6N6 1097 aa16.08■□□□□ 0.16
HDAC4-206ENST00000460235 TMOD3Q9NYL9 352 aa16.08■□□□□ 0.16
HDAC4-206ENST00000460235 SALL2Q9Y467 1007 aaPredicted RBP16.08■□□□□ 0.16
HDAC4-206ENST00000460235 LRRC37A3O60309 1634 aa16.08■□□□□ 0.16
HDAC4-206ENST00000460235 TRIM35Q9UPQ4 493 aa16.07■□□□□ 0.16
HDAC4-206ENST00000460235 CEMIPQ8WUJ3 1361 aa16.06■□□□□ 0.16
HDAC4-206ENST00000460235 MCM10Q7L590 875 aa16.06■□□□□ 0.16
HDAC4-206ENST00000460235 IL17REQ8NFR9 667 aa16.06■□□□□ 0.16
HDAC4-206ENST00000460235 SLC52A2Q9HAB3 445 aa16.06■□□□□ 0.16
HDAC4-206ENST00000460235 IFT57Q9NWB7 429 aa16.06■□□□□ 0.16
HDAC4-206ENST00000460235 RGS12O14924 1447 aa16.05■□□□□ 0.16
HDAC4-206ENST00000460235 E9PSI1 815 aa16.05■□□□□ 0.16
HDAC4-206ENST00000460235 SMARCC1Q92922 1105 aaPredicted RBP16.05■□□□□ 0.16
HDAC4-206ENST00000460235 SYTL4Q96C24 671 aaPredicted RBP16.05■□□□□ 0.16
HDAC4-206ENST00000460235 CFAP44Q96MT7 982 aa16.05■□□□□ 0.16
HDAC4-206ENST00000460235 BTBD11A6QL63 1104 aa16.04■□□□□ 0.16
HDAC4-206ENST00000460235 TTC5Q8N0Z6 440 aa16.04■□□□□ 0.16
HDAC4-206ENST00000460235 YTHDC1Q96MU7 727 aaKnown RBP16.04■□□□□ 0.16
HDAC4-206ENST00000460235 LGR6Q9HBX8 967 aa16.04■□□□□ 0.16
HDAC4-206ENST00000460235 PRIM1P49642 420 aaKnown RBP16.03■□□□□ 0.16
HDAC4-206ENST00000460235 NFATC2IPQ8NCF5 419 aa16.03■□□□□ 0.16
HDAC4-206ENST00000460235 BCL11BQ9C0K0 894 aaPredicted RBP16.03■□□□□ 0.16
HDAC4-206ENST00000460235 SF3B2Q13435 895 aaKnown RBP16.02■□□□□ 0.16
HDAC4-206ENST00000460235 DCTN1Q14203 1278 aa16.02■□□□□ 0.16
HDAC4-206ENST00000460235 TSPYL4Q9UJ04 414 aa16.02■□□□□ 0.16
HDAC4-206ENST00000460235 LAS1LQ9Y4W2 734 aaKnown RBP16.02■□□□□ 0.16
HDAC4-206ENST00000460235 CCDC125Q86Z20 511 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms