RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 PPP1R1BQ9UD71 204 aaPredicted RBP31.59■■■□□ 2.65
PTPN4-207ENST00000460162 ZCRB1Q8TBF4 217 aaKnown RBP31.58■■■□□ 2.65
PTPN4-207ENST00000460162 HSP90AB2PQ58FF8 381 aa31.57■■■□□ 2.64
PTPN4-207ENST00000460162 LY75O60449 1722 aa31.57■■■□□ 2.64
PTPN4-207ENST00000460162 QSER1Q2KHR3 1735 aa31.55■■■□□ 2.64
PTPN4-207ENST00000460162 CCER1Q8TC90 406 aaPredicted RBP31.55■■■□□ 2.64
PTPN4-207ENST00000460162 RAPGEF4Q8WZA2 1011 aa31.55■■■□□ 2.64
PTPN4-207ENST00000460162 PDGFDQ9GZP0 370 aaPredicted RBP31.55■■■□□ 2.64
PTPN4-207ENST00000460162 EIF4G2P78344 907 aaKnown RBP eCLIP31.54■■■□□ 2.641e-7■■■■■ 57.2
PTPN4-207ENST00000460162 USHBP1Q8N6Y0 703 aa31.54■■■□□ 2.64
PTPN4-207ENST00000460162 MAP2P11137 1827 aaKnown RBP31.54■■■□□ 2.64
PTPN4-207ENST00000460162 PKD1L3Q7Z443 1732 aa31.53■■■□□ 2.64
PTPN4-207ENST00000460162 NSD2O96028 1365 aa31.53■■■□□ 2.64
PTPN4-207ENST00000460162 EMILIN1Q9Y6C2 1016 aa31.52■■■□□ 2.64
PTPN4-207ENST00000460162 NCAPD2Q15021 1401 aa31.51■■■□□ 2.64
PTPN4-207ENST00000460162 SLC27A3Q5K4L6 730 aa31.51■■■□□ 2.63
PTPN4-207ENST00000460162 ZBTB7AO95365 584 aa31.5■■■□□ 2.63
PTPN4-207ENST00000460162 TATP17735 454 aaPredicted RBP31.5■■■□□ 2.63
PTPN4-207ENST00000460162 SYTL4Q96C24 671 aaPredicted RBP31.5■■■□□ 2.63
PTPN4-207ENST00000460162 LRRC4BQ9NT99 713 aa31.49■■■□□ 2.63
PTPN4-207ENST00000460162 PCDH11XQ9BZA7 1347 aa31.49■■■□□ 2.63
PTPN4-207ENST00000460162 PCDH11YQ9BZA8 1340 aa31.49■■■□□ 2.63
PTPN4-207ENST00000460162 HSPA5P11021 654 aaKnown RBP31.48■■■□□ 2.63
PTPN4-207ENST00000460162 PRIM1P49642 420 aaKnown RBP31.48■■■□□ 2.63
PTPN4-207ENST00000460162 POLR3GLQ9BT43 218 aa31.48■■■□□ 2.63
PTPN4-207ENST00000460162 PTGER2P43116 358 aa31.46■■■□□ 2.63
PTPN4-207ENST00000460162 ZNF827Q17R98 1081 aa31.46■■■□□ 2.63
PTPN4-207ENST00000460162 MTFR1LQ9H019 292 aa31.46■■■□□ 2.63
PTPN4-207ENST00000460162 TUBGCP6Q96RT7 1819 aa31.46■■■□□ 2.63
PTPN4-207ENST00000460162 WASHC2AQ641Q2 1341 aa31.44■■■□□ 2.62
PTPN4-207ENST00000460162 TOGARAM1Q9Y4F4 1720 aa31.43■■■□□ 2.62
PTPN4-207ENST00000460162 ATF5Q9Y2D1 282 aaPredicted RBP31.42■■■□□ 2.62
PTPN4-207ENST00000460162 PPM1GO15355 546 aaPredicted RBP31.41■■■□□ 2.62
PTPN4-207ENST00000460162 AKT1S1Q96B36 256 aa31.41■■■□□ 2.62
PTPN4-207ENST00000460162 COL24A1Q17RW2 1714 aa31.38■■■□□ 2.61
PTPN4-207ENST00000460162 ITGB4P16144 1822 aa31.38■■■□□ 2.61
PTPN4-207ENST00000460162 SGIP1Q9BQI5 828 aa31.38■■■□□ 2.61
PTPN4-207ENST00000460162 POLKQ9UBT6 870 aa31.38■■■□□ 2.61
PTPN4-207ENST00000460162 C5P01031 1676 aa31.37■■■□□ 2.61
PTPN4-207ENST00000460162 CYP27B1O15528 508 aa31.35■■■□□ 2.61
PTPN4-207ENST00000460162 PLEKHG2Q9H7P9 1386 aa31.34■■■□□ 2.61
PTPN4-207ENST00000460162 DCAF8L1A6NGE4 600 aa31.34■■■□□ 2.61
PTPN4-207ENST00000460162 PANK3Q9H999 370 aa31.34■■■□□ 2.61
PTPN4-207ENST00000460162 CCNL1Q9UK58 526 aaPredicted RBP31.34■■■□□ 2.61
PTPN4-207ENST00000460162 PNPLA7Q6ZV29 1317 aa31.32■■■□□ 2.6
PTPN4-207ENST00000460162 SLC16A10Q8TF71 515 aa31.32■■■□□ 2.6
PTPN4-207ENST00000460162 EYA1Q99502 592 aa31.32■■■□□ 2.6
PTPN4-207ENST00000460162 TAF1LQ8IZX4 1826 aa31.32■■■□□ 2.6
PTPN4-207ENST00000460162 KCNQ4P56696 695 aa31.31■■■□□ 2.6
PTPN4-207ENST00000460162 SPG7Q9UQ90 795 aa31.31■■■□□ 2.6
PTPN4-207ENST00000460162 TFCP2L1Q9NZI6 479 aa31.3■■■□□ 2.6
PTPN4-207ENST00000460162 MAP3K5Q99683 1374 aa31.3■■■□□ 2.6
PTPN4-207ENST00000460162 TNNT2P45379 298 aaPredicted RBP31.29■■■□□ 2.6
PTPN4-207ENST00000460162 FHDC1Q9C0D6 1143 aaPredicted RBP31.29■■■□□ 2.6
PTPN4-207ENST00000460162 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.29■■■□□ 2.6
PTPN4-207ENST00000460162 PALLDQ8WX93 1383 aa31.29■■■□□ 2.6
PTPN4-207ENST00000460162 EIF4A2Q14240 407 aaKnown RBP31.27■■■□□ 2.6
PTPN4-207ENST00000460162 ARXQ96QS3 562 aa31.27■■■□□ 2.6
PTPN4-207ENST00000460162 HMGB2P26583 209 aaKnown RBP31.26■■■□□ 2.59
PTPN4-207ENST00000460162 NKX1-1Q15270 411 aaPredicted RBP31.26■■■□□ 2.59
PTPN4-207ENST00000460162 SYT17Q9BSW7 474 aa31.26■■■□□ 2.59
PTPN4-207ENST00000460162 MPRIPQ6WCQ1 1025 aa31.25■■■□□ 2.59
PTPN4-207ENST00000460162 IGSF1Q8N6C5 1336 aa31.24■■■□□ 2.59
PTPN4-207ENST00000460162 C4BP0C0L5 1744 aa31.22■■■□□ 2.59
PTPN4-207ENST00000460162 SMARCC1Q92922 1105 aaPredicted RBP31.22■■■□□ 2.59
PTPN4-207ENST00000460162 YY1P25490 414 aa31.21■■■□□ 2.59
PTPN4-207ENST00000460162 POLD1P28340 1107 aa31.21■■■□□ 2.59
PTPN4-207ENST00000460162 MORC1Q86VD1 984 aa31.19■■■□□ 2.58
PTPN4-207ENST00000460162 IFNL2Q8IZJ0 200 aa31.19■■■□□ 2.58
PTPN4-207ENST00000460162 KNSTRNQ9Y448 316 aa31.19■■■□□ 2.58
PTPN4-207ENST00000460162 PHKG2P15735 406 aa31.18■■■□□ 2.58
PTPN4-207ENST00000460162 PIGBQ92521 554 aa31.17■■■□□ 2.58
PTPN4-207ENST00000460162 KIF7Q2M1P5 1343 aa31.17■■■□□ 2.58
PTPN4-207ENST00000460162 UBR3Q6ZT12 1888 aa31.15■■■□□ 2.58
PTPN4-207ENST00000460162 TMOD3Q9NYL9 352 aa31.14■■■□□ 2.58
PTPN4-207ENST00000460162 COL23A1Q86Y22 540 aaPredicted RBP31.13■■■□□ 2.57
PTPN4-207ENST00000460162 FLAD1Q8NFF5 587 aa31.12■■■□□ 2.57
PTPN4-207ENST00000460162 CHD4Q14839 1912 aa31.1■■■□□ 2.57
PTPN4-207ENST00000460162 MSH5O43196 834 aa31.1■■■□□ 2.57
PTPN4-207ENST00000460162 AMER1Q5JTC6 1135 aaPredicted RBP31.1■■■□□ 2.57
PTPN4-207ENST00000460162 ZNF831Q5JPB2 1677 aa31.09■■■□□ 2.57
PTPN4-207ENST00000460162 UTRNP46939 3433 aa31.08■■■□□ 2.57
PTPN4-207ENST00000460162 AK7Q96M32 723 aa31.08■■■□□ 2.57
PTPN4-207ENST00000460162 LOC102724428A0A0B4J2F2 783 aa31.07■■■□□ 2.56
PTPN4-207ENST00000460162 HSP90AB1P08238 724 aaKnown RBP31.07■■■□□ 2.56
PTPN4-207ENST00000460162 SIK1P57059 783 aa31.07■■■□□ 2.56
PTPN4-207ENST00000460162 KDRP35968 1356 aa31.06■■■□□ 2.56
PTPN4-207ENST00000460162 AMOTQ4VCS5 1084 aa31.06■■■□□ 2.56
PTPN4-207ENST00000460162 PLEKHO1Q53GL0 409 aaPredicted RBP31.06■■■□□ 2.56
PTPN4-207ENST00000460162 KLHL34Q8N239 644 aa31.06■■■□□ 2.56
PTPN4-207ENST00000460162 DCAF5Q96JK2 942 aa31.04■■■□□ 2.56
PTPN4-207ENST00000460162 ASAP1Q9ULH1 1129 aa31.04■■■□□ 2.56
PTPN4-207ENST00000460162 KDM6AO15550 1401 aaPredicted RBP31.04■■■□□ 2.56
PTPN4-207ENST00000460162 ERVV-2B6SEH9 535 aa31.03■■■□□ 2.56
PTPN4-207ENST00000460162 ZNF530Q6P9A1 599 aaPredicted RBP31.02■■■□□ 2.56
PTPN4-207ENST00000460162 AEBP1Q8IUX7 1158 aa31.02■■■□□ 2.56
PTPN4-207ENST00000460162 MSL1Q68DK7 614 aa31.01■■■□□ 2.55
PTPN4-207ENST00000460162 COL5A3P25940 1745 aaPredicted RBP31.01■■■□□ 2.55
PTPN4-207ENST00000460162 SSFA2P28290 1259 aa31■■■□□ 2.55
PTPN4-207ENST00000460162 IL13P35225 146 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms