RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 POLKQ9UBT6 870 aa22.11■■□□□ 1.13
COL7A1-203ENST00000459756 KNSTRNQ9Y448 316 aa22.11■■□□□ 1.13
COL7A1-203ENST00000459756 KCNQ2O43526 872 aa22.1■■□□□ 1.13
COL7A1-203ENST00000459756 TNNT2P45379 298 aaPredicted RBP22.1■■□□□ 1.13
COL7A1-203ENST00000459756 ACSBG1Q96GR2 724 aa22.09■■□□□ 1.13
COL7A1-203ENST00000459756 TATP17735 454 aaPredicted RBP22.08■■□□□ 1.13
COL7A1-203ENST00000459756 SHANK3Q9BYB0 1731 aa22.08■■□□□ 1.12
COL7A1-203ENST00000459756 MORC1Q86VD1 984 aa22.06■■□□□ 1.12
COL7A1-203ENST00000459756 KAT6BQ8WYB5 2073 aa22.06■■□□□ 1.12
COL7A1-203ENST00000459756 LRP5O75197 1615 aa22.06■■□□□ 1.12
COL7A1-203ENST00000459756 NCAPD2Q15021 1401 aa22.06■■□□□ 1.12
COL7A1-203ENST00000459756 PROM2Q8N271 834 aa22.05■■□□□ 1.12
COL7A1-203ENST00000459756 BTAF1O14981 1849 aa22.04■■□□□ 1.12
COL7A1-203ENST00000459756 TXNRD1Q16881 649 aa22.04■■□□□ 1.12
COL7A1-203ENST00000459756 AMER1Q5JTC6 1135 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-203ENST00000459756 PCDH11XQ9BZA7 1347 aa22.02■■□□□ 1.12
COL7A1-203ENST00000459756 PCDH11YQ9BZA8 1340 aa22.02■■□□□ 1.12
COL7A1-203ENST00000459756 EIF4A2Q14240 407 aaKnown RBP22.01■■□□□ 1.11
COL7A1-203ENST00000459756 EYA1Q99502 592 aa22.01■■□□□ 1.11
COL7A1-203ENST00000459756 DOT1LQ8TEK3 1739 aa22■■□□□ 1.11
COL7A1-203ENST00000459756 PER1O15534 1290 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-203ENST00000459756 PRIM1P49642 420 aaKnown RBP21.99■■□□□ 1.11
COL7A1-203ENST00000459756 PKD1L3Q7Z443 1732 aa21.99■■□□□ 1.11
COL7A1-203ENST00000459756 SYTL4Q96C24 671 aaPredicted RBP21.98■■□□□ 1.11
COL7A1-203ENST00000459756 ANO8Q9HCE9 1232 aaPredicted RBP21.97■■□□□ 1.11
COL7A1-203ENST00000459756 SPG7Q9UQ90 795 aa21.97■■□□□ 1.11
COL7A1-203ENST00000459756 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.96■■□□□ 1.118e-9■■■■□ 20.5
COL7A1-203ENST00000459756 CYP27B1O15528 508 aa21.95■■□□□ 1.1
COL7A1-203ENST00000459756 STK32BQ9NY57 414 aa21.95■■□□□ 1.1
COL7A1-203ENST00000459756 IGSF1Q8N6C5 1336 aa21.95■■□□□ 1.1
COL7A1-203ENST00000459756 PLEKHG2Q9H7P9 1386 aa21.95■■□□□ 1.1
COL7A1-203ENST00000459756 NPC1L1Q9UHC9 1359 aa21.93■■□□□ 1.1
COL7A1-203ENST00000459756 SLC15A2Q16348 729 aa21.92■■□□□ 1.1
COL7A1-203ENST00000459756 SLC27A3Q5K4L6 730 aa21.92■■□□□ 1.1
COL7A1-203ENST00000459756 PAPPAQ13219 1627 aa21.91■■□□□ 1.1
COL7A1-203ENST00000459756 NKX1-1Q15270 411 aaPredicted RBP21.91■■□□□ 1.1
COL7A1-203ENST00000459756 CC2D1BQ5T0F9 858 aaKnown RBP21.91■■□□□ 1.1
COL7A1-203ENST00000459756 LRRC4BQ9NT99 713 aa21.9■■□□□ 1.1
COL7A1-203ENST00000459756 CASZ1Q86V15 1759 aa21.89■■□□□ 1.1
COL7A1-203ENST00000459756 LY75O60449 1722 aa21.89■■□□□ 1.1
COL7A1-203ENST00000459756 MTHFSP49914 203 aa21.88■■□□□ 1.09
COL7A1-203ENST00000459756 SPON1Q9HCB6 807 aa21.88■■□□□ 1.09
COL7A1-203ENST00000459756 TOGARAM1Q9Y4F4 1720 aa21.88■■□□□ 1.09
COL7A1-203ENST00000459756 IL13P35225 146 aa21.87■■□□□ 1.09
COL7A1-203ENST00000459756 IFNL2Q8IZJ0 200 aa21.87■■□□□ 1.09
COL7A1-203ENST00000459756 ITGB4P16144 1822 aa21.86■■□□□ 1.09
COL7A1-203ENST00000459756 PHKG2P15735 406 aa21.86■■□□□ 1.09
COL7A1-203ENST00000459756 MPRIPQ6WCQ1 1025 aa21.86■■□□□ 1.09
COL7A1-203ENST00000459756 PLEKHO1Q53GL0 409 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-203ENST00000459756 PDGFDQ9GZP0 370 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-203ENST00000459756 CCNL1Q9UK58 526 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-203ENST00000459756 KDRP35968 1356 aa21.84■■□□□ 1.09
COL7A1-203ENST00000459756 ZNF827Q17R98 1081 aa21.83■■□□□ 1.09
COL7A1-203ENST00000459756 AMOTQ4VCS5 1084 aa21.83■■□□□ 1.09
COL7A1-203ENST00000459756 SULT6B1Q6IMI4 303 aa21.83■■□□□ 1.09
COL7A1-203ENST00000459756 AEBP1Q8IUX7 1158 aa21.83■■□□□ 1.09
COL7A1-203ENST00000459756 AKT1S1Q96B36 256 aa21.83■■□□□ 1.09
COL7A1-203ENST00000459756 HMGB2P26583 209 aaKnown RBP21.82■■□□□ 1.08
COL7A1-203ENST00000459756 SMARCC1Q92922 1105 aaPredicted RBP21.82■■□□□ 1.08
COL7A1-203ENST00000459756 HSP90AB1P08238 724 aaKnown RBP21.81■■□□□ 1.08
COL7A1-203ENST00000459756 KCNQ4P56696 695 aa21.81■■□□□ 1.08
COL7A1-203ENST00000459756 PIGBQ92521 554 aa21.81■■□□□ 1.08
COL7A1-203ENST00000459756 PALLDQ8WX93 1383 aa21.81■■□□□ 1.08
COL7A1-203ENST00000459756 ZBTB7AO95365 584 aa21.8■■□□□ 1.08
COL7A1-203ENST00000459756 CNGB1Q14028 1251 aaPredicted RBP21.8■■□□□ 1.08
COL7A1-203ENST00000459756 TMOD3Q9NYL9 352 aa21.8■■□□□ 1.08
COL7A1-203ENST00000459756 QSER1Q2KHR3 1735 aa21.8■■□□□ 1.08
COL7A1-203ENST00000459756 DIAPH1O60610 1272 aaKnown RBP21.79■■□□□ 1.08
COL7A1-203ENST00000459756 ZNF530Q6P9A1 599 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-203ENST00000459756 MTFR1LQ9H019 292 aa21.79■■□□□ 1.08
COL7A1-203ENST00000459756 PPP1R1BQ9UD71 204 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-203ENST00000459756 DCAF5Q96JK2 942 aa21.78■■□□□ 1.08
COL7A1-203ENST00000459756 TFCP2L1Q9NZI6 479 aa21.78■■□□□ 1.08
COL7A1-203ENST00000459756 ERVV-2B6SEH9 535 aa21.77■■□□□ 1.08
COL7A1-203ENST00000459756 C5P01031 1676 aa21.76■■□□□ 1.07
COL7A1-203ENST00000459756 C1orf141Q5JVX7 400 aa21.76■■□□□ 1.07
COL7A1-203ENST00000459756 ATF5Q9Y2D1 282 aaPredicted RBP21.76■■□□□ 1.07
COL7A1-203ENST00000459756 COL3A1P02461 1466 aaPredicted RBP21.75■■□□□ 1.07
COL7A1-203ENST00000459756 TUBGCP6Q96RT7 1819 aa21.74■■□□□ 1.07
COL7A1-203ENST00000459756 PTGER2P43116 358 aa21.74■■□□□ 1.07
COL7A1-203ENST00000459756 SLC16A10Q8TF71 515 aa21.74■■□□□ 1.07
COL7A1-203ENST00000459756 PNPLA7Q6ZV29 1317 aa21.74■■□□□ 1.07
COL7A1-203ENST00000459756 TAF1LQ8IZX4 1826 aa21.73■■□□□ 1.07
COL7A1-203ENST00000459756 KDM6AO15550 1401 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-203ENST00000459756 HMOX1P09601 288 aa21.73■■□□□ 1.07
COL7A1-203ENST00000459756 ASAP1Q9ULH1 1129 aa21.72■■□□□ 1.07
COL7A1-203ENST00000459756 LOC102724428A0A0B4J2F2 783 aa21.71■■□□□ 1.07
COL7A1-203ENST00000459756 SIK1P57059 783 aa21.71■■□□□ 1.07
COL7A1-203ENST00000459756 CFAP53Q96M91 514 aa21.71■■□□□ 1.07
COL7A1-203ENST00000459756 CABP4P57796 275 aa21.7■■□□□ 1.06
COL7A1-203ENST00000459756 SGIP1Q9BQI5 828 aa21.7■■□□□ 1.06
COL7A1-203ENST00000459756 ATG3Q9NT62 314 aa21.7■■□□□ 1.06
COL7A1-203ENST00000459756 AKAP4Q5JQC9 854 aa21.69■■□□□ 1.06
COL7A1-203ENST00000459756 C4BP0C0L5 1744 aa21.69■■□□□ 1.06
COL7A1-203ENST00000459756 U2SURPO15042 1029 aaKnown RBP21.68■■□□□ 1.06
COL7A1-203ENST00000459756 PPP2R1AP30153 589 aa21.68■■□□□ 1.06
COL7A1-203ENST00000459756 SCN11AQ9UI33 1791 aa21.67■■□□□ 1.06
COL7A1-203ENST00000459756 FLAD1Q8NFF5 587 aa21.67■■□□□ 1.06
COL7A1-203ENST00000459756 AK7Q96M32 723 aa21.66■■□□□ 1.06
COL7A1-203ENST00000459756 COL24A1Q17RW2 1714 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms