RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 SBF2Q86WG5 1849 aa31.45■■■□□ 2.62
CBX3-204ENST00000456948 NPC1L1Q9UHC9 1359 aa31.44■■■□□ 2.62
CBX3-204ENST00000456948 R3HDM1Q15032 1099 aaKnown RBP31.44■■■□□ 2.62
CBX3-204ENST00000456948 EIF4A2Q14240 407 aaKnown RBP31.43■■■□□ 2.62
CBX3-204ENST00000456948 EYA1Q99502 592 aa31.43■■■□□ 2.62
CBX3-204ENST00000456948 MEGF6O75095 1541 aa31.41■■■□□ 2.62
CBX3-204ENST00000456948 NBPF14Q5TI25 921 aa31.4■■■□□ 2.62
CBX3-204ENST00000456948 ACSBG1Q96GR2 724 aa31.4■■■□□ 2.62
CBX3-204ENST00000456948 SPG7Q9UQ90 795 aa31.4■■■□□ 2.62
CBX3-204ENST00000456948 PCDH11XQ9BZA7 1347 aa31.39■■■□□ 2.62
CBX3-204ENST00000456948 PCDH11YQ9BZA8 1340 aa31.39■■■□□ 2.62
CBX3-204ENST00000456948 PTF1AQ7RTS3 328 aa31.38■■■□□ 2.61
CBX3-204ENST00000456948 MTHFSP49914 203 aa31.36■■■□□ 2.61
CBX3-204ENST00000456948 CNGB1Q14028 1251 aaPredicted RBP31.36■■■□□ 2.61
CBX3-204ENST00000456948 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.36■■■□□ 2.618e-12■■■□□ 16
CBX3-204ENST00000456948 RREB1Q92766 1687 aa31.35■■■□□ 2.61
CBX3-204ENST00000456948 KCNQ2O43526 872 aa31.35■■■□□ 2.61
CBX3-204ENST00000456948 NCAPD2Q15021 1401 aa31.33■■■□□ 2.61
CBX3-204ENST00000456948 SYTL4Q96C24 671 aaPredicted RBP31.33■■■□□ 2.61
CBX3-204ENST00000456948 NUP188Q5SRE5 1749 aa31.32■■■□□ 2.61
CBX3-204ENST00000456948 PLEKHG2Q9H7P9 1386 aa31.31■■■□□ 2.6
CBX3-204ENST00000456948 IGSF1Q8N6C5 1336 aa31.31■■■□□ 2.6
CBX3-204ENST00000456948 NHSQ6T4R5 1651 aa31.31■■■□□ 2.6
CBX3-204ENST00000456948 PRIM1P49642 420 aaKnown RBP31.29■■■□□ 2.6
CBX3-204ENST00000456948 RGPD3A6NKT7 1758 aaPredicted RBP31.29■■■□□ 2.6
CBX3-204ENST00000456948 RGPD4Q7Z3J3 1758 aa31.29■■■□□ 2.6
CBX3-204ENST00000456948 IL13P35225 146 aa31.26■■■□□ 2.59
CBX3-204ENST00000456948 TXNRD1Q16881 649 aa31.26■■■□□ 2.59
CBX3-204ENST00000456948 PLEKHO1Q53GL0 409 aaPredicted RBP31.26■■■□□ 2.59
CBX3-204ENST00000456948 DIAPH1O60610 1272 aaKnown RBP31.25■■■□□ 2.59
CBX3-204ENST00000456948 AMOTQ4VCS5 1084 aa31.25■■■□□ 2.59
CBX3-204ENST00000456948 IFNL2Q8IZJ0 200 aa31.25■■■□□ 2.59
CBX3-204ENST00000456948 LRP5O75197 1615 aa31.24■■■□□ 2.59
CBX3-204ENST00000456948 CYP27B1O15528 508 aa31.24■■■□□ 2.59
CBX3-204ENST00000456948 CFAP53Q96M91 514 aa31.24■■■□□ 2.59
CBX3-204ENST00000456948 SULT6B1Q6IMI4 303 aa31.23■■■□□ 2.59
CBX3-204ENST00000456948 SHANK3Q9BYB0 1731 aa31.23■■■□□ 2.59
CBX3-204ENST00000456948 HMGB2P26583 209 aaKnown RBP31.22■■■□□ 2.59
CBX3-204ENST00000456948 HSP90AB1P08238 724 aaKnown RBP31.2■■■□□ 2.59
CBX3-204ENST00000456948 NKX1-1Q15270 411 aaPredicted RBP31.2■■■□□ 2.59
CBX3-204ENST00000456948 PROM2Q8N271 834 aa31.2■■■□□ 2.59
CBX3-204ENST00000456948 PKD1L3Q7Z443 1732 aa31.2■■■□□ 2.58
CBX3-204ENST00000456948 BTAF1O14981 1849 aa31.19■■■□□ 2.58
CBX3-204ENST00000456948 SLC27A3Q5K4L6 730 aa31.18■■■□□ 2.58
CBX3-204ENST00000456948 PHKG2P15735 406 aa31.17■■■□□ 2.58
CBX3-204ENST00000456948 STK32BQ9NY57 414 aa31.17■■■□□ 2.58
CBX3-204ENST00000456948 DOT1LQ8TEK3 1739 aa31.16■■■□□ 2.58
CBX3-204ENST00000456948 MPRIPQ6WCQ1 1025 aa31.16■■■□□ 2.58
CBX3-204ENST00000456948 C1orf141Q5JVX7 400 aa31.15■■■□□ 2.58
CBX3-204ENST00000456948 AEBP1Q8IUX7 1158 aa31.15■■■□□ 2.58
CBX3-204ENST00000456948 KDRP35968 1356 aa31.15■■■□□ 2.58
CBX3-204ENST00000456948 ANO8Q9HCE9 1232 aaPredicted RBP31.14■■■□□ 2.58
CBX3-204ENST00000456948 ZNF530Q6P9A1 599 aaPredicted RBP31.13■■■□□ 2.57
CBX3-204ENST00000456948 NUDCQ9Y266 331 aa31.13■■■□□ 2.57
CBX3-204ENST00000456948 PPP2R1AP30153 589 aa31.12■■■□□ 2.57
CBX3-204ENST00000456948 SMARCC1Q92922 1105 aaPredicted RBP31.12■■■□□ 2.57
CBX3-204ENST00000456948 U2SURPO15042 1029 aaKnown RBP31.11■■■□□ 2.57
CBX3-204ENST00000456948 TMOD3Q9NYL9 352 aa31.11■■■□□ 2.57
CBX3-204ENST00000456948 HMOX1P09601 288 aa31.1■■■□□ 2.57
CBX3-204ENST00000456948 DDX10Q13206 875 aaKnown RBP31.1■■■□□ 2.57
CBX3-204ENST00000456948 DCAF5Q96JK2 942 aa31.1■■■□□ 2.57
CBX3-204ENST00000456948 SLC15A2Q16348 729 aa31.08■■■□□ 2.57
CBX3-204ENST00000456948 ERVV-2B6SEH9 535 aa31.07■■■□□ 2.56
CBX3-204ENST00000456948 CCNL1Q9UK58 526 aaPredicted RBP31.06■■■□□ 2.56
CBX3-204ENST00000456948 SPON1Q9HCB6 807 aa31.05■■■□□ 2.56
CBX3-204ENST00000456948 PIGBQ92521 554 aa31.04■■■□□ 2.56
CBX3-204ENST00000456948 RALBP1Q15311 655 aa31.03■■■□□ 2.56
CBX3-204ENST00000456948 LRRC4BQ9NT99 713 aa31.03■■■□□ 2.56
CBX3-204ENST00000456948 AKAP4Q5JQC9 854 aa31.02■■■□□ 2.56
CBX3-204ENST00000456948 ITGB4P16144 1822 aa31.01■■■□□ 2.56
CBX3-204ENST00000456948 CABP4P57796 275 aa31.01■■■□□ 2.55
CBX3-204ENST00000456948 PDGFDQ9GZP0 370 aaPredicted RBP31.01■■■□□ 2.55
CBX3-204ENST00000456948 PPP1R1BQ9UD71 204 aaPredicted RBP31.01■■■□□ 2.55
CBX3-204ENST00000456948 PALLDQ8WX93 1383 aa31.01■■■□□ 2.55
CBX3-204ENST00000456948 COL3A1P02461 1466 aaPredicted RBP31■■■□□ 2.55
CBX3-204ENST00000456948 LY75O60449 1722 aa30.98■■■□□ 2.55
CBX3-204ENST00000456948 ZBTB7AO95365 584 aa30.97■■■□□ 2.55
CBX3-204ENST00000456948 U2AF1L5P0DN76 240 aaPredicted RBP30.97■■■□□ 2.55
CBX3-204ENST00000456948 U2AF1Q01081 240 aaKnown RBP eCLIP30.97■■■□□ 2.55
CBX3-204ENST00000456948 TOGARAM1Q9Y4F4 1720 aa30.96■■■□□ 2.55
CBX3-204ENST00000456948 GAS2L2Q8NHY3 880 aa30.96■■■□□ 2.55
CBX3-204ENST00000456948 TFCP2L1Q9NZI6 479 aa30.96■■■□□ 2.55
CBX3-204ENST00000456948 CASZ1Q86V15 1759 aa30.96■■■□□ 2.55
CBX3-204ENST00000456948 KCNQ4P56696 695 aa30.94■■■□□ 2.54
CBX3-204ENST00000456948 NEFMP07197 916 aa30.93■■■□□ 2.54
CBX3-204ENST00000456948 MTHFSDQ2M296 383 aaKnown RBP30.93■■■□□ 2.54
CBX3-204ENST00000456948 AKT1S1Q96B36 256 aa30.93■■■□□ 2.54
CBX3-204ENST00000456948 ATF5Q9Y2D1 282 aaPredicted RBP30.93■■■□□ 2.54
CBX3-204ENST00000456948 FCHSD2O94868 740 aa30.92■■■□□ 2.54
CBX3-204ENST00000456948 ASAP1Q9ULH1 1129 aa30.92■■■□□ 2.54
CBX3-204ENST00000456948 LOC102724428A0A0B4J2F2 783 aa30.91■■■□□ 2.54
CBX3-204ENST00000456948 SIK1P57059 783 aa30.91■■■□□ 2.54
CBX3-204ENST00000456948 ZNF827Q17R98 1081 aa30.9■■■□□ 2.54
CBX3-204ENST00000456948 ATG3Q9NT62 314 aa30.9■■■□□ 2.54
CBX3-204ENST00000456948 PAPPAQ13219 1627 aa30.9■■■□□ 2.54
CBX3-204ENST00000456948 KDM6AO15550 1401 aaPredicted RBP30.9■■■□□ 2.54
CBX3-204ENST00000456948 PRKAR2BP31323 418 aa30.89■■■□□ 2.54
CBX3-204ENST00000456948 NFATC2IPQ8NCF5 419 aa30.89■■■□□ 2.54
CBX3-204ENST00000456948 PNNQ9H307 717 aaKnown RBP30.88■■■□□ 2.53
CBX3-204ENST00000456948 ATP6V1AP38606 617 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms