RNA–Protein interactions for RNA: ENST00000456096.6

TVP23A-202, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,223 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-202ENST00000456096 TMF1P82094 1093 aa23.46■■□□□ 1.35
TVP23A-202ENST00000456096 NBPF6Q5VWK0 638 aa23.45■■□□□ 1.34
TVP23A-202ENST00000456096 NBPF4Q96M43 638 aa23.45■■□□□ 1.34
TVP23A-202ENST00000456096 DOT1LQ8TEK3 1739 aa23.45■■□□□ 1.34
TVP23A-202ENST00000456096 SHANK3Q9BYB0 1731 aa23.45■■□□□ 1.34
TVP23A-202ENST00000456096 RTL1A6NKG5 1358 aa23.44■■□□□ 1.34
TVP23A-202ENST00000456096 USP47Q96K76 1375 aa23.44■■□□□ 1.34
TVP23A-202ENST00000456096 NSD2O96028 1365 aa23.43■■□□□ 1.34
TVP23A-202ENST00000456096 USHBP1Q8N6Y0 703 aa23.43■■□□□ 1.34
TVP23A-202ENST00000456096 PNPLA7Q6ZV29 1317 aa23.42■■□□□ 1.34
TVP23A-202ENST00000456096 SLC16A10Q8TF71 515 aa23.42■■□□□ 1.34
TVP23A-202ENST00000456096 QSER1Q2KHR3 1735 aa23.42■■□□□ 1.34
TVP23A-202ENST00000456096 TFCP2L1Q9NZI6 479 aa23.41■■□□□ 1.34
TVP23A-202ENST00000456096 GOLGB1Q14789 3259 aaKnown RBP23.41■■□□□ 1.34
TVP23A-202ENST00000456096 MAP3K5Q99683 1374 aa23.4■■□□□ 1.34
TVP23A-202ENST00000456096 LY75O60449 1722 aa23.4■■□□□ 1.34
TVP23A-202ENST00000456096 HSP90AB2PQ58FF8 381 aa23.39■■□□□ 1.33
TVP23A-202ENST00000456096 RAPGEF4Q8WZA2 1011 aa23.39■■□□□ 1.33
TVP23A-202ENST00000456096 TUBGCP6Q96RT7 1819 aa23.38■■□□□ 1.33
TVP23A-202ENST00000456096 CGNL1Q0VF96 1302 aa23.38■■□□□ 1.33
TVP23A-202ENST00000456096 ZNF784Q8NCA9 323 aaPredicted RBP23.38■■□□□ 1.33
TVP23A-202ENST00000456096 SMG6Q86US8 1419 aaKnown RBP23.38■■□□□ 1.33
TVP23A-202ENST00000456096 POLD1P28340 1107 aa23.37■■□□□ 1.33
TVP23A-202ENST00000456096 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
TVP23A-202ENST00000456096 CCNL1Q9UK58 526 aaPredicted RBP23.37■■□□□ 1.33
TVP23A-202ENST00000456096 CHD4Q14839 1912 aa23.37■■□□□ 1.33
TVP23A-202ENST00000456096 TATP17735 454 aaPredicted RBP23.36■■□□□ 1.33
TVP23A-202ENST00000456096 CDCA8Q53HL2 280 aa23.36■■□□□ 1.33
TVP23A-202ENST00000456096 KLHL34Q8N239 644 aa23.36■■□□□ 1.33
TVP23A-202ENST00000456096 INSRP06213 1382 aa23.36■■□□□ 1.33
TVP23A-202ENST00000456096 COL24A1Q17RW2 1714 aa23.36■■□□□ 1.33
TVP23A-202ENST00000456096 KIF20BQ96Q89 1820 aa23.36■■□□□ 1.33
TVP23A-202ENST00000456096 CARD14Q9BXL6 1004 aa23.34■■□□□ 1.33
TVP23A-202ENST00000456096 FLT4P35916 1363 aa23.33■■□□□ 1.33
TVP23A-202ENST00000456096 GPR162Q16538 588 aa23.33■■□□□ 1.33
TVP23A-202ENST00000456096 KIF24Q5T7B8 1368 aa23.31■■□□□ 1.32
TVP23A-202ENST00000456096 PCDH11XQ9BZA7 1347 aa23.31■■□□□ 1.32
TVP23A-202ENST00000456096 PCDH11YQ9BZA8 1340 aa23.31■■□□□ 1.32
TVP23A-202ENST00000456096 MSH5O43196 834 aa23.3■■□□□ 1.32
TVP23A-202ENST00000456096 COL23A1Q86Y22 540 aaPredicted RBP23.3■■□□□ 1.32
TVP23A-202ENST00000456096 EMILIN1Q9Y6C2 1016 aa23.3■■□□□ 1.32
TVP23A-202ENST00000456096 NSD3Q9BZ95 1437 aa23.29■■□□□ 1.32
TVP23A-202ENST00000456096 CYP27B1O15528 508 aa23.28■■□□□ 1.32
TVP23A-202ENST00000456096 MPRIPQ6WCQ1 1025 aa23.28■■□□□ 1.32
TVP23A-202ENST00000456096 NLGN2Q8NFZ4 835 aa23.28■■□□□ 1.32
TVP23A-202ENST00000456096 PELP1Q8IZL8 1130 aaKnown RBP23.27■■□□□ 1.32
TVP23A-202ENST00000456096 PPM1GO15355 546 aaPredicted RBP23.26■■□□□ 1.31
TVP23A-202ENST00000456096 C5P01031 1676 aa23.25■■□□□ 1.31
TVP23A-202ENST00000456096 PALLDQ8WX93 1383 aa23.25■■□□□ 1.31
TVP23A-202ENST00000456096 MSL1Q68DK7 614 aa23.24■■□□□ 1.31
TVP23A-202ENST00000456096 TOGARAM1Q9Y4F4 1720 aa23.22■■□□□ 1.31
TVP23A-202ENST00000456096 ITGB4P16144 1822 aa23.22■■□□□ 1.31
TVP23A-202ENST00000456096 TAF1LQ8IZX4 1826 aa23.22■■□□□ 1.31
TVP23A-202ENST00000456096 TIMELESSQ9UNS1 1208 aa23.21■■□□□ 1.31
TVP23A-202ENST00000456096 PKD1L3Q7Z443 1732 aa23.21■■□□□ 1.31
TVP23A-202ENST00000456096 NCAPD2Q15021 1401 aa23.2■■□□□ 1.3
TVP23A-202ENST00000456096 WASHC2AQ641Q2 1341 aa23.2■■□□□ 1.3
TVP23A-202ENST00000456096 SMARCC1Q92922 1105 aaPredicted RBP23.2■■□□□ 1.3
TVP23A-202ENST00000456096 MAP2P11137 1827 aaKnown RBP23.19■■□□□ 1.3
TVP23A-202ENST00000456096 HMGB2P26583 209 aaKnown RBP23.19■■□□□ 1.3
TVP23A-202ENST00000456096 NKX1-1Q15270 411 aaPredicted RBP23.19■■□□□ 1.3
TVP23A-202ENST00000456096 FLAD1Q8NFF5 587 aa23.19■■□□□ 1.3
TVP23A-202ENST00000456096 PIGBQ92521 554 aa23.19■■□□□ 1.3
TVP23A-202ENST00000456096 SPG7Q9UQ90 795 aa23.19■■□□□ 1.3
TVP23A-202ENST00000456096 ANKRD26Q9UPS8 1709 aa23.19■■□□□ 1.3
TVP23A-202ENST00000456096 YBX3P16989 372 aaKnown RBP eCLIP23.18■■□□□ 1.3
TVP23A-202ENST00000456096 EYA1Q99502 592 aa23.18■■□□□ 1.3
TVP23A-202ENST00000456096 C4BP0C0L5 1744 aa23.16■■□□□ 1.3
TVP23A-202ENST00000456096 AMIGO3Q86WK7 504 aa23.16■■□□□ 1.3
TVP23A-202ENST00000456096 POLR3GLQ9BT43 218 aa23.16■■□□□ 1.3
TVP23A-202ENST00000456096 POLKQ9UBT6 870 aa23.16■■□□□ 1.3
TVP23A-202ENST00000456096 C1QTNF8P60827 252 aa23.15■■□□□ 1.3
TVP23A-202ENST00000456096 AK7Q96M32 723 aa23.15■■□□□ 1.3
TVP23A-202ENST00000456096 GRIN3BO60391 1043 aa23.14■■□□□ 1.29
TVP23A-202ENST00000456096 SMIM5Q71RC9 77 aa23.14■■□□□ 1.29
TVP23A-202ENST00000456096 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.14■■□□□ 1.29
TVP23A-202ENST00000456096 TNNT2P45379 298 aaPredicted RBP23.13■■□□□ 1.29
TVP23A-202ENST00000456096 CD2APQ9Y5K6 639 aa23.13■■□□□ 1.29
TVP23A-202ENST00000456096 PCGF6Q9BYE7 350 aa23.12■■□□□ 1.29
TVP23A-202ENST00000456096 TMOD3Q9NYL9 352 aa23.12■■□□□ 1.29
TVP23A-202ENST00000456096 UBR3Q6ZT12 1888 aa23.11■■□□□ 1.29
TVP23A-202ENST00000456096 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.11■■□□□ 1.29
TVP23A-202ENST00000456096 LOC102724428A0A0B4J2F2 783 aa23.11■■□□□ 1.29
TVP23A-202ENST00000456096 PHF14O94880 888 aa23.11■■□□□ 1.29
TVP23A-202ENST00000456096 SIK1P57059 783 aa23.11■■□□□ 1.29
TVP23A-202ENST00000456096 SENP3-EIF4A1A0A087X0R7 540 aa23.1■■□□□ 1.29
TVP23A-202ENST00000456096 PHKG2P15735 406 aa23.1■■□□□ 1.29
TVP23A-202ENST00000456096 EIF4A2Q14240 407 aaKnown RBP23.1■■□□□ 1.29
TVP23A-202ENST00000456096 IFNL2Q8IZJ0 200 aa23.1■■□□□ 1.29
TVP23A-202ENST00000456096 LINC00116Q8NCU8 138 aa23.1■■□□□ 1.29
TVP23A-202ENST00000456096 ASAP1Q9ULH1 1129 aa23.1■■□□□ 1.29
TVP23A-202ENST00000456096 CLSPNQ9HAW4 1339 aa23.08■■□□□ 1.29
TVP23A-202ENST00000456096 GIGYF1O75420 1035 aaPredicted RBP23.08■■□□□ 1.29
TVP23A-202ENST00000456096 ITPK1Q13572 414 aa23.07■■□□□ 1.28
TVP23A-202ENST00000456096 SSFA2P28290 1259 aa23.06■■□□□ 1.28
TVP23A-202ENST00000456096 ATP6V1AP38606 617 aa23.06■■□□□ 1.28
TVP23A-202ENST00000456096 ATG3Q9NT62 314 aa23.06■■□□□ 1.28
TVP23A-202ENST00000456096 CEP350Q5VT06 3117 aa23.06■■□□□ 1.28
TVP23A-202ENST00000456096 GNPATO15228 680 aa23.04■■□□□ 1.28
TVP23A-202ENST00000456096 PANK3Q9H999 370 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms