RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CHL1O00533 1208 aa18.38■□□□□ 0.53
USP39-207ENST00000450066 PDE3AQ14432 1141 aa18.38■□□□□ 0.53
USP39-207ENST00000450066 LMO7Q8WWI1 1683 aa18.38■□□□□ 0.53
USP39-207ENST00000450066 MAP3K5Q99683 1374 aa18.38■□□□□ 0.53
USP39-207ENST00000450066 ROBO1Q9Y6N7 1651 aa18.37■□□□□ 0.53
USP39-207ENST00000450066 CANXP27824 592 aaKnown RBP18.37■□□□□ 0.53
USP39-207ENST00000450066 CHRNA2Q15822 529 aa18.37■□□□□ 0.53
USP39-207ENST00000450066 CCDC136Q96JN2 1154 aa18.37■□□□□ 0.53
USP39-207ENST00000450066 ALDH1L2Q3SY69 923 aa18.36■□□□□ 0.53
USP39-207ENST00000450066 AMOTQ4VCS5 1084 aa18.36■□□□□ 0.53
USP39-207ENST00000450066 BCL2L13Q9BXK5 485 aa18.36■□□□□ 0.53
USP39-207ENST00000450066 AHDC1Q5TGY3 1603 aaPredicted RBP18.35■□□□□ 0.53
USP39-207ENST00000450066 PLEKHO1Q53GL0 409 aaPredicted RBP18.35■□□□□ 0.53
USP39-207ENST00000450066 SSH1Q8WYL5 1049 aa18.35■□□□□ 0.53
USP39-207ENST00000450066 FRAT1Q92837 279 aaPredicted RBP18.35■□□□□ 0.53
USP39-207ENST00000450066 SMC4Q9NTJ3 1288 aa18.35■□□□□ 0.53
USP39-207ENST00000450066 FAM208AQ9UK61 1670 aaKnown RBP18.35■□□□□ 0.53
USP39-207ENST00000450066 ABCA3Q99758 1704 aa18.35■□□□□ 0.53
USP39-207ENST00000450066 LRRC37A3O60309 1634 aa18.34■□□□□ 0.53
USP39-207ENST00000450066 VAMP4O75379 141 aa18.34■□□□□ 0.53
USP39-207ENST00000450066 HAP1P54257 671 aaPredicted RBP18.34■□□□□ 0.53
USP39-207ENST00000450066 PRDM11Q9NQV5 511 aa18.34■□□□□ 0.53
USP39-207ENST00000450066 NLRP2Q9NX02 1062 aa18.34■□□□□ 0.53
USP39-207ENST00000450066 CSB-PGBD3P0DP91 1061 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 BRPF1P55201 1214 aaPredicted RBP18.32■□□□□ 0.52
USP39-207ENST00000450066 TWISTNBQ3B726 338 aaPredicted RBP18.32■□□□□ 0.52
USP39-207ENST00000450066 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 C8orf58Q8NAV2 365 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 IL17REQ8NFR9 667 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 PLEKHG2Q9H7P9 1386 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 AKAP4Q5JQC9 854 aa18.32■□□□□ 0.52
USP39-207ENST00000450066 ZKSCAN2Q63HK3 967 aa18.31■□□□□ 0.52
USP39-207ENST00000450066 BABAM1Q9NWV8 329 aa18.31■□□□□ 0.52
USP39-207ENST00000450066 CEMIPQ8WUJ3 1361 aa18.31■□□□□ 0.52
USP39-207ENST00000450066 ZNF530Q6P9A1 599 aaPredicted RBP18.3■□□□□ 0.52
USP39-207ENST00000450066 KIF16BQ96L93 1317 aa18.3■□□□□ 0.52
USP39-207ENST00000450066 MS4A1P11836 297 aa18.3■□□□□ 0.52
USP39-207ENST00000450066 RAPGEF4Q8WZA2 1011 aa18.3■□□□□ 0.52
USP39-207ENST00000450066 PANK1Q8TE04 598 aa18.29■□□□□ 0.52
USP39-207ENST00000450066 TSPYL4Q9UJ04 414 aa18.29■□□□□ 0.52
USP39-207ENST00000450066 ELL2O00472 640 aaPredicted RBP18.29■□□□□ 0.52
USP39-207ENST00000450066 WDR17Q8IZU2 1322 aa18.28■□□□□ 0.52
USP39-207ENST00000450066 IPO8O15397 1037 aaKnown RBP18.28■□□□□ 0.52
USP39-207ENST00000450066 TOM1O60784 492 aa18.28■□□□□ 0.52
USP39-207ENST00000450066 TAF7Q15545 349 aaPredicted RBP18.28■□□□□ 0.52
USP39-207ENST00000450066 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
USP39-207ENST00000450066 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.27■□□□□ 0.529e-7■□□□□ 10
USP39-207ENST00000450066 MIS18AQ9NYP9 233 aa18.27■□□□□ 0.52
USP39-207ENST00000450066 COL5A2P05997 1499 aaPredicted RBP18.27■□□□□ 0.52
USP39-207ENST00000450066 TATP17735 454 aaPredicted RBP18.27■□□□□ 0.51
USP39-207ENST00000450066 ATF7IPQ6VMQ6 1270 aa18.27■□□□□ 0.51
USP39-207ENST00000450066 NOB1Q9ULX3 412 aaKnown RBP18.27■□□□□ 0.51
USP39-207ENST00000450066 COL22A1Q8NFW1 1626 aaPredicted RBP18.27■□□□□ 0.51
USP39-207ENST00000450066 OVOS2A0A0G2JMS6 1433 aa18.26■□□□□ 0.51
USP39-207ENST00000450066 RLBP1P12271 317 aa18.26■□□□□ 0.51
USP39-207ENST00000450066 MRPL50Q8N5N7 158 aaKnown RBP18.26■□□□□ 0.51
USP39-207ENST00000450066 TRIM27P14373 513 aa18.26■□□□□ 0.51
USP39-207ENST00000450066 DZIP1LQ8IYY4 767 aaKnown RBP18.26■□□□□ 0.51
USP39-207ENST00000450066 COG6Q9Y2V7 657 aa18.26■□□□□ 0.51
USP39-207ENST00000450066 AAMPQ13685 434 aa18.25■□□□□ 0.51
USP39-207ENST00000450066 LGR6Q9HBX8 967 aa18.25■□□□□ 0.51
USP39-207ENST00000450066 TNNQ9UQP3 1299 aa18.25■□□□□ 0.51
USP39-207ENST00000450066 MEGF6O75095 1541 aa18.25■□□□□ 0.51
USP39-207ENST00000450066 KRT24Q2M2I5 525 aa18.24■□□□□ 0.51
USP39-207ENST00000450066 FTSJ3Q8IY81 847 aaKnown RBP18.24■□□□□ 0.51
USP39-207ENST00000450066 ARHGAP45Q92619 1136 aa18.24■□□□□ 0.51
USP39-207ENST00000450066 CLUAP1Q96AJ1 413 aa18.24■□□□□ 0.51
USP39-207ENST00000450066 SPG7Q9UQ90 795 aa18.24■□□□□ 0.51
USP39-207ENST00000450066 MPRIPQ6WCQ1 1025 aa18.23■□□□□ 0.51
USP39-207ENST00000450066 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
USP39-207ENST00000450066 RNMTO43148 476 aaKnown RBP18.22■□□□□ 0.51
USP39-207ENST00000450066 TOM1L2Q6ZVM7 507 aa18.22■□□□□ 0.51
USP39-207ENST00000450066 COL16A1Q07092 1604 aaPredicted RBP18.22■□□□□ 0.51
USP39-207ENST00000450066 SOS1Q07889 1333 aaPredicted RBP18.22■□□□□ 0.51
USP39-207ENST00000450066 TEFQ10587 303 aa18.22■□□□□ 0.51
USP39-207ENST00000450066 MVPQ14764 893 aaKnown RBP18.22■□□□□ 0.51
USP39-207ENST00000450066 ADAMTS7Q9UKP4 1686 aa18.21■□□□□ 0.51
USP39-207ENST00000450066 CARD10Q9BWT7 1032 aa18.21■□□□□ 0.51
USP39-207ENST00000450066 PKD1L3Q7Z443 1732 aa18.2■□□□□ 0.5
USP39-207ENST00000450066 EVA1CP58658 441 aa18.2■□□□□ 0.5
USP39-207ENST00000450066 AEBP2Q6ZN18 517 aaPredicted RBP18.2■□□□□ 0.5
USP39-207ENST00000450066 PHKG2P15735 406 aa18.19■□□□□ 0.5
USP39-207ENST00000450066 PIP4K2BP78356 416 aa18.19■□□□□ 0.5
USP39-207ENST00000450066 COL14A1Q05707 1796 aaKnown RBP18.19■□□□□ 0.5
USP39-207ENST00000450066 TCERG1O14776 1098 aaKnown RBP18.19■□□□□ 0.5
USP39-207ENST00000450066 IFNL2Q8IZJ0 200 aa18.19■□□□□ 0.5
USP39-207ENST00000450066 LARP1Q6PKG0 1096 aaKnown RBP18.18■□□□□ 0.5
USP39-207ENST00000450066 STRN4Q9NRL3 753 aa18.18■□□□□ 0.5
USP39-207ENST00000450066 UBAP1LF5GYI3 381 aa18.18■□□□□ 0.5
USP39-207ENST00000450066 VIRMAQ69YN4 1812 aaKnown RBP18.18■□□□□ 0.5
USP39-207ENST00000450066 PARP4Q9UKK3 1724 aaKnown RBP18.18■□□□□ 0.5
USP39-207ENST00000450066 KDM3BQ7LBC6 1761 aa18.17■□□□□ 0.5
USP39-207ENST00000450066 BTBD11A6QL63 1104 aa18.17■□□□□ 0.5
USP39-207ENST00000450066 BTG4Q9NY30 223 aa18.17■□□□□ 0.5
USP39-207ENST00000450066 DDX19BQ9UMR2 479 aa18.17■□□□□ 0.5
USP39-207ENST00000450066 KDM2BQ8NHM5 1336 aa18.16■□□□□ 0.5
USP39-207ENST00000450066 API5Q9BZZ5 524 aaKnown RBP18.16■□□□□ 0.5
USP39-207ENST00000450066 CYP27B1O15528 508 aa18.16■□□□□ 0.5
USP39-207ENST00000450066 CENPQQ7L2Z9 268 aaPredicted RBP18.16■□□□□ 0.5
USP39-207ENST00000450066 TMEM57Q8N5G2 664 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 596.7 ms