RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CPLX2Q6PUV4 134 aaKnown RBP8.99□□□□□ -0.97
SYNE1-213ENST00000448038 MPHOSPH8Q99549 860 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 ARAP3Q8WWN8 1544 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 GOLGA6L6A8MZA4 724 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 CCDC158Q5M9N0 1113 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 ZCRB1Q8TBF4 217 aaKnown RBP8.99□□□□□ -0.97
SYNE1-213ENST00000448038 UGGT1Q9NYU2 1555 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 MAP3K19Q56UN5 1328 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 ZFYVE9O95405 1425 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 SYAP1Q96A49 352 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-213ENST00000448038 MYD88Q99836 296 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 CHD1LQ86WJ1 897 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 HYPKQ9NX55 129 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 EFCAB6Q5THR3 1501 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 PIK3C2GO75747 1445 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 EDC4Q6P2E9 1401 aaKnown RBP8.98□□□□□ -0.97
SYNE1-213ENST00000448038 TTC39AQ5SRH9 613 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 FLIIQ13045 1269 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 DNAAF4Q8WXU2 420 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 CCDC85AQ96PX6 553 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-213ENST00000448038 EYA1Q99502 592 aa8.98□□□□□ -0.97
SYNE1-213ENST00000448038 TRIM27P14373 513 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 HOXC9P31274 260 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 IL1RAPL2Q9NP60 686 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 SIRT1Q96EB6 747 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 CEP126Q9P2H0 1117 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 ZNF652Q9Y2D9 606 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 PLEKHH1Q9ULM0 1364 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 CPLX1O14810 134 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 RAD21O60216 631 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 SF3A1Q15459 793 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 MTHFSDQ2M296 383 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 RALYLQ86SE5 291 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 AACSQ86V21 672 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 IP6K1Q92551 441 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 HIP1O00291 1037 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 HMGB2P26583 209 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 EXOC6BQ9Y2D4 811 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 PTPRCP08575 1304 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 SPATA31E1Q6ZUB1 1445 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 FOXD4L6Q3SYB3 417 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 AKAP4Q5JQC9 854 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 DNTTIP2Q5QJE6 756 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 L1TD1Q5T7N2 865 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 FOXD4L3Q6VB84 417 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 C8orf37Q96NL8 207 aa8.97□□□□□ -0.97
SYNE1-213ENST00000448038 GNL3LQ9NVN8 582 aaKnown RBP8.97□□□□□ -0.97
SYNE1-213ENST00000448038 ERVK-7P63135 1459 aa8.96□□□□□ -0.97
SYNE1-213ENST00000448038 ERICH2A1L162 156 aa8.96□□□□□ -0.97
SYNE1-213ENST00000448038 NFXL1Q6ZNB6 911 aa8.96□□□□□ -0.97
SYNE1-213ENST00000448038 PPP1R1BQ9UD71 204 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-213ENST00000448038 NRDCO43847 1150 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 ZPR1O75312 459 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 SNRPA1P09661 255 aaKnown RBP8.96□□□□□ -0.98
SYNE1-213ENST00000448038 RASSF8Q8NHQ8 419 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 CCDC34Q96HJ3 373 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 TEX13AQ9BXU3 409 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-213ENST00000448038 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-213ENST00000448038 NPC1L1Q9UHC9 1359 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 PLXNC1O60486 1568 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 PTPRTO14522 1441 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 MCTP1Q6DN14 999 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 ATP6V1DQ9Y5K8 247 aa8.96□□□□□ -0.98
SYNE1-213ENST00000448038 PRDM15P57071 1507 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-213ENST00000448038 METP08581 1390 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 PLEKHG1Q9ULL1 1385 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 PLEKHG3A1L390 1219 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 IL2RBP14784 551 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 PHACTR3Q96KR7 559 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 MAP4K4O95819 1239 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-213ENST00000448038 ZBTB3Q9H5J0 574 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 ABCC3O15438 1527 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 ANXA1P04083 346 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 DRC7Q8IY82 874 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 SLC39A6Q13433 755 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 HSP90AB3PQ58FF7 597 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 MAP3K2Q9Y2U5 619 aa8.95□□□□□ -0.98
SYNE1-213ENST00000448038 MARCH6O60337 910 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 KIF1BO60333 1816 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 IGHMBP2P38935 993 aaKnown RBP8.94□□□□□ -0.98
SYNE1-213ENST00000448038 SLAIN2Q9P270 581 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 LRRFIP2Q9Y608 721 aaKnown RBP8.94□□□□□ -0.98
SYNE1-213ENST00000448038 SHROOM2Q13796 1616 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 PI4KAP2A4QPH2 592 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 PSMA5P28066 241 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 TRIM29Q14134 588 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 DDB1Q16531 1140 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 PI4KAP1Q8N8J0 262 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 DDX17Q92841 729 aaKnown RBP8.94□□□□□ -0.98
SYNE1-213ENST00000448038 KIF1BPQ96EK5 621 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-213ENST00000448038 RSPH6AQ9H0K4 717 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 KAT6BQ8WYB5 2073 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 A0A087WZG4 1122 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 FKBP4Q02790 459 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-213ENST00000448038 DNAJC5Q9H3Z4 198 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 PIK3R4Q99570 1358 aa8.94□□□□□ -0.98
SYNE1-213ENST00000448038 DHX16O60231 1041 aaKnown RBP8.93□□□□□ -0.98
SYNE1-213ENST00000448038 VPS53Q5VIR6 699 aa8.93□□□□□ -0.98
SYNE1-213ENST00000448038 SMC3Q9UQE7 1217 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms