RNA–Protein interactions for RNA: ENST00000446155.1

HMGB1P48-201, Transcript of high mobility group box 1 pseudogene 48, humanhuman

BASIC

Gene HMGB1P48, Length 598 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P48-201ENST00000446155 USP4Q13107 963 aa8.44□□□□□ -1.06
HMGB1P48-201ENST00000446155 Q6ZVU0 165 aa8.44□□□□□ -1.06
HMGB1P48-201ENST00000446155 KDF1Q8NAX2 398 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P48-201ENST00000446155 FAM187AA6NFU0 413 aa8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 ZBTB7BO15156 539 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 DGAT1O75907 488 aa8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 DKK1O94907 266 aa8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 SIRT1Q96EB6 747 aa8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 VRTNQ9H8Y1 702 aa8.43□□□□□ -1.06
HMGB1P48-201ENST00000446155 FAM196BA6NMK8 535 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 ATG7O95352 703 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 SMCPP49901 116 aaPredicted RBP8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 CLDN10P78369 228 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 CBLBQ13191 982 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 LAPTM4AQ15012 233 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 MEIOBQ8N635 442 aa8.42□□□□□ -1.06
HMGB1P48-201ENST00000446155 MYCP01106 439 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 ADH1AP07327 375 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 GTF2IP78347 998 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 PTK7Q13308 1070 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 CRTC2Q53ET0 693 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 TRIM50Q86XT4 487 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 CRIPAKQ8N1N5 446 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 TRIM52Q96A61 297 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 KIAA1024Q9UPX6 916 aa8.41□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L15C9J2P7 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L10C9JJH3 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L13C9JLJ4 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L12C9JPN9 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L11C9JVI0 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L21D6R901 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L18D6R9N7 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L22D6RA61 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L17D6RBQ6 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L19D6RCP7 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L20D6RJB6 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 USP17L24Q0WX57 530 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 ELOAQ14241 798 aaKnown RBP8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 CDCA8Q53HL2 280 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 OGFOD1Q8N543 542 aa8.4□□□□□ -1.06
HMGB1P48-201ENST00000446155 CAPN5O15484 640 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 CYP2U1Q7Z449 544 aa8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 SIX5Q8N196 739 aa8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 LARGE2Q8N3Y3 721 aa8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 DNAAF2Q9NVR5 837 aaKnown RBP8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 ZMIZ1Q9ULJ6 1067 aa8.39□□□□□ -1.07
HMGB1P48-201ENST00000446155 WASLO00401 505 aaPredicted RBP8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 RASA1P20936 1047 aa8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 ATP1A2P50993 1020 aa8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 SCNN1DP51172 638 aa8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 CTC1Q2NKJ3 1217 aa8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 HOMEZQ8IX15 550 aa8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 IRX2Q9BZI1 471 aaPredicted RBP8.38□□□□□ -1.07
HMGB1P48-201ENST00000446155 TMEM229AB2RXF0 380 aa8.37□□□□□ -1.07
HMGB1P48-201ENST00000446155 GNRH1P01148 92 aa8.37□□□□□ -1.07
HMGB1P48-201ENST00000446155 PKDCCQ504Y2 493 aa8.37□□□□□ -1.07
HMGB1P48-201ENST00000446155 STAU1O95793 577 aaKnown RBP8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 PTGIRP43119 386 aa8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 LARP1Q6PKG0 1096 aaKnown RBP8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 ZNF594Q96JF6 807 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 AGBL1Q96MI9 1066 aa8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 ETNK1Q9HBU6 452 aa8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 HRH3Q9Y5N1 445 aa8.36□□□□□ -1.07
HMGB1P48-201ENST00000446155 CCDC102BQ68D86 513 aa8.35□□□□□ -1.07
HMGB1P48-201ENST00000446155 ANKMY2Q8IV38 441 aa8.35□□□□□ -1.07
HMGB1P48-201ENST00000446155 TPCN2Q8NHX9 752 aa8.35□□□□□ -1.07
HMGB1P48-201ENST00000446155 LCE2BO14633 110 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 IL2RAP01589 272 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 DPYDQ12882 1025 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 TRIM46Q7Z4K8 759 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 XAGE2Q96GT9 111 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 AAASQ9NRG9 546 aa8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 NOVA2Q9UNW9 492 aaKnown RBP8.34□□□□□ -1.07
HMGB1P48-201ENST00000446155 M0R2N6 131 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 SPINT1O43278 529 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 INHAP05111 366 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 GDF10P55107 478 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 RELBQ01201 579 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 FAM69CQ0P6D2 419 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 CLN3Q13286 438 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 MRPL14Q6P1L8 145 aaKnown RBP8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 LINC00528Q8N1L1 170 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 STK32AQ8WU08 396 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 TSEN34Q9BSV6 310 aaKnown RBP8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 ESF1Q9H501 851 aaKnown RBP8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 ARHGEF10LQ9HCE6 1279 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 ZNF358Q9NW07 568 aa8.33□□□□□ -1.08
HMGB1P48-201ENST00000446155 A0A1W2PRU2 124 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 TMEM88BA6NKF7 163 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 AXIN1O15169 862 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 ST8SIA5O15466 376 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 PSME1Q06323 249 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 RETREG2Q8NC44 543 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 SLC4A9Q96Q91 983 aa8.32□□□□□ -1.08
HMGB1P48-201ENST00000446155 SFI1A8K8P3 1242 aa8.31□□□□□ -1.08
HMGB1P48-201ENST00000446155 BMP1P13497 986 aa8.31□□□□□ -1.08
HMGB1P48-201ENST00000446155 EPHA4P54764 986 aa8.31□□□□□ -1.08
HMGB1P48-201ENST00000446155 SEC13P55735 322 aa8.31□□□□□ -1.08
HMGB1P48-201ENST00000446155 TMEM164Q5U3C3 297 aa8.31□□□□□ -1.08
HMGB1P48-201ENST00000446155 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms