RNA–Protein interactions for RNA: ENST00000444942.1

LINC00642-203, long intergenic non-protein coding RNA 642, humanhuman

TSL 1 (best)

Gene LINC00642, Length 1,376 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-203ENST00000444942 CCDC7Q96M83 1385 aa13.07□□□□□ -0.32
LINC00642-203ENST00000444942 PPIP5K1Q6PFW1 1433 aa13.07□□□□□ -0.32
LINC00642-203ENST00000444942 MSH5O43196 834 aa13.07□□□□□ -0.32
LINC00642-203ENST00000444942 TNRC6CQ9HCJ0 1690 aaKnown RBP13.07□□□□□ -0.32
LINC00642-203ENST00000444942 PKD1L3Q7Z443 1732 aa13.06□□□□□ -0.32
LINC00642-203ENST00000444942 CENPJQ9HC77 1338 aaPredicted RBP13.06□□□□□ -0.32
LINC00642-203ENST00000444942 C10orf71Q711Q0 1435 aa13.06□□□□□ -0.32
LINC00642-203ENST00000444942 KCNQ4P56696 695 aa13.06□□□□□ -0.32
LINC00642-203ENST00000444942 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
LINC00642-203ENST00000444942 USP54Q70EL1 1684 aa13.04□□□□□ -0.32
LINC00642-203ENST00000444942 MLLT1Q03111 559 aaPredicted RBP13.04□□□□□ -0.32
LINC00642-203ENST00000444942 CDK19Q9BWU1 502 aa13.04□□□□□ -0.32
LINC00642-203ENST00000444942 PRDM10Q9NQV6 1147 aa13.04□□□□□ -0.32
LINC00642-203ENST00000444942 CPSF1Q10570 1443 aaKnown RBP13.03□□□□□ -0.32
LINC00642-203ENST00000444942 CSB-PGBD3P0DP91 1061 aa13.03□□□□□ -0.32
LINC00642-203ENST00000444942 SMC1BQ8NDV3 1235 aa13.03□□□□□ -0.32
LINC00642-203ENST00000444942 KIAA1551Q9HCM1 1747 aa13.02□□□□□ -0.32
LINC00642-203ENST00000444942 SRPK2P78362 688 aaKnown RBP13.02□□□□□ -0.33
LINC00642-203ENST00000444942 CABP2Q9NPB3 220 aa13.02□□□□□ -0.33
LINC00642-203ENST00000444942 CCDC61Q9Y6R9 512 aa13.02□□□□□ -0.33
LINC00642-203ENST00000444942 PXDNLA1KZ92 1463 aa13.02□□□□□ -0.33
LINC00642-203ENST00000444942 C5P01031 1676 aa13.02□□□□□ -0.33
LINC00642-203ENST00000444942 KIF13BQ9NQT8 1826 aa13.01□□□□□ -0.33
LINC00642-203ENST00000444942 PDE4DIPQ5VU43 2346 aa13.01□□□□□ -0.33
LINC00642-203ENST00000444942 PLEKHG2Q9H7P9 1386 aa13.01□□□□□ -0.33
LINC00642-203ENST00000444942 TAF1LQ8IZX4 1826 aa13□□□□□ -0.33
LINC00642-203ENST00000444942 N4BP2Q86UW6 1770 aaPredicted RBP13□□□□□ -0.33
LINC00642-203ENST00000444942 KCPQ6ZWJ8 1503 aa13□□□□□ -0.33
LINC00642-203ENST00000444942 RGS19P49795 217 aa13□□□□□ -0.33
LINC00642-203ENST00000444942 NLRP6P59044 892 aa13□□□□□ -0.33
LINC00642-203ENST00000444942 DOT1LQ8TEK3 1739 aa12.99□□□□□ -0.33
LINC00642-203ENST00000444942 KDM2BQ8NHM5 1336 aa12.99□□□□□ -0.33
LINC00642-203ENST00000444942 FOXN1O15353 648 aa12.99□□□□□ -0.33
LINC00642-203ENST00000444942 ABHD8Q96I13 439 aa12.99□□□□□ -0.33
LINC00642-203ENST00000444942 BRCA1P38398 1863 aaKnown RBP12.98□□□□□ -0.33
LINC00642-203ENST00000444942 ARHGEF25Q86VW2 580 aa12.98□□□□□ -0.33
LINC00642-203ENST00000444942 TNRC18O15417 2968 aaPredicted RBP12.98□□□□□ -0.33
LINC00642-203ENST00000444942 ARFGEF1Q9Y6D6 1849 aa12.98□□□□□ -0.33
LINC00642-203ENST00000444942 RRAGCQ9HB90 399 aa12.97□□□□□ -0.33
LINC00642-203ENST00000444942 CCNL1Q9UK58 526 aaPredicted RBP12.97□□□□□ -0.33
LINC00642-203ENST00000444942 TIMELESSQ9UNS1 1208 aa12.97□□□□□ -0.33
LINC00642-203ENST00000444942 EVC2Q86UK5 1308 aa12.96□□□□□ -0.33
LINC00642-203ENST00000444942 ST20-MTHFSA0A0A6YYL1 179 aa12.96□□□□□ -0.33
LINC00642-203ENST00000444942 FLAD1Q8NFF5 587 aa12.96□□□□□ -0.33
LINC00642-203ENST00000444942 SBF1O95248 1867 aa12.96□□□□□ -0.34
LINC00642-203ENST00000444942 IL2RBP14784 551 aa12.95□□□□□ -0.34
LINC00642-203ENST00000444942 ARHGAP27Q6ZUM4 889 aa12.95□□□□□ -0.34
LINC00642-203ENST00000444942 USP47Q96K76 1375 aa12.95□□□□□ -0.34
LINC00642-203ENST00000444942 TOGARAM1Q9Y4F4 1720 aa12.95□□□□□ -0.34
LINC00642-203ENST00000444942 UBR3Q6ZT12 1888 aa12.95□□□□□ -0.34
LINC00642-203ENST00000444942 C9orf131Q5VYM1 1079 aa12.94□□□□□ -0.34
LINC00642-203ENST00000444942 NSD2O96028 1365 aa12.94□□□□□ -0.34
LINC00642-203ENST00000444942 CTCFP49711 727 aaPredicted RBP12.94□□□□□ -0.34
LINC00642-203ENST00000444942 BCS1LQ9Y276 419 aa12.94□□□□□ -0.34
LINC00642-203ENST00000444942 ANKRD36BQ8N2N9 1353 aa12.93□□□□□ -0.34
LINC00642-203ENST00000444942 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
LINC00642-203ENST00000444942 PRIM1P49642 420 aaKnown RBP12.92□□□□□ -0.34
LINC00642-203ENST00000444942 KCNH5Q8NCM2 988 aa12.92□□□□□ -0.34
LINC00642-203ENST00000444942 SYTL4Q96C24 671 aaPredicted RBP12.92□□□□□ -0.34
LINC00642-203ENST00000444942 NFAT5O94916 1531 aa12.92□□□□□ -0.34
LINC00642-203ENST00000444942 VIRMAQ69YN4 1812 aaKnown RBP12.91□□□□□ -0.34
LINC00642-203ENST00000444942 TMC1Q8TDI8 760 aa12.91□□□□□ -0.34
LINC00642-203ENST00000444942 C4BP0C0L5 1744 aa12.9□□□□□ -0.34
LINC00642-203ENST00000444942 TESK2Q96S53 571 aa12.9□□□□□ -0.34
LINC00642-203ENST00000444942 POLR3GLQ9BT43 218 aa12.9□□□□□ -0.34
LINC00642-203ENST00000444942 NLRP2Q9NX02 1062 aa12.9□□□□□ -0.34
LINC00642-203ENST00000444942 ERBB3P21860 1342 aa12.89□□□□□ -0.35
LINC00642-203ENST00000444942 ZNF316A6NFI3 1004 aaPredicted RBP12.89□□□□□ -0.35
LINC00642-203ENST00000444942 TGFB2P61812 414 aa12.89□□□□□ -0.35
LINC00642-203ENST00000444942 AIDAQ96BJ3 306 aa12.89□□□□□ -0.35
LINC00642-203ENST00000444942 MKRN1Q9UHC7 482 aaKnown RBP12.89□□□□□ -0.35
LINC00642-203ENST00000444942 LTN1O94822 1766 aa12.88□□□□□ -0.35
LINC00642-203ENST00000444942 SBNO2Q9Y2G9 1366 aa12.88□□□□□ -0.35
LINC00642-203ENST00000444942 CCDC85CA6NKD9 419 aa12.88□□□□□ -0.35
LINC00642-203ENST00000444942 LBX1P52954 281 aa12.88□□□□□ -0.35
LINC00642-203ENST00000444942 DDX54Q8TDD1 881 aaKnown RBP12.88□□□□□ -0.35
LINC00642-203ENST00000444942 FCHSD2O94868 740 aa12.87□□□□□ -0.35
LINC00642-203ENST00000444942 HSPA5P11021 654 aaKnown RBP12.87□□□□□ -0.35
LINC00642-203ENST00000444942 HMGB2P26583 209 aaKnown RBP12.87□□□□□ -0.35
LINC00642-203ENST00000444942 CREBZFQ9NS37 354 aa12.87□□□□□ -0.35
LINC00642-203ENST00000444942 A0A0G2JLW4 131 aa12.86□□□□□ -0.35
LINC00642-203ENST00000444942 SOX12O15370 315 aa12.86□□□□□ -0.35
LINC00642-203ENST00000444942 TMF1P82094 1093 aa12.86□□□□□ -0.35
LINC00642-203ENST00000444942 SLC12A5Q9H2X9 1139 aa12.86□□□□□ -0.35
LINC00642-203ENST00000444942 RNF181Q9P0P0 153 aa12.86□□□□□ -0.35
LINC00642-203ENST00000444942 VEGFAP15692 232 aaPredicted RBP12.85□□□□□ -0.35
LINC00642-203ENST00000444942 EIF4G2P78344 907 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00642-203ENST00000444942 AMIGO3Q86WK7 504 aa12.85□□□□□ -0.35
LINC00642-203ENST00000444942 CNTNAP1P78357 1384 aa12.85□□□□□ -0.35
LINC00642-203ENST00000444942 MON2Q7Z3U7 1717 aa12.84□□□□□ -0.35
LINC00642-203ENST00000444942 NSD3Q9BZ95 1437 aa12.84□□□□□ -0.35
LINC00642-203ENST00000444942 SMIM5Q71RC9 77 aa12.84□□□□□ -0.35
LINC00642-203ENST00000444942 FAM208AQ9UK61 1670 aaKnown RBP12.84□□□□□ -0.35
LINC00642-203ENST00000444942 WBP1LQ9NX94 342 aa12.83□□□□□ -0.36
LINC00642-203ENST00000444942 KTN1Q86UP2 1357 aaKnown RBP12.83□□□□□ -0.36
LINC00642-203ENST00000444942 CCDC88AQ3V6T2 1871 aa12.83□□□□□ -0.36
LINC00642-203ENST00000444942 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.82□□□□□ -0.36
LINC00642-203ENST00000444942 HSPA8P11142 646 aaKnown RBP12.82□□□□□ -0.36
LINC00642-203ENST00000444942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.82□□□□□ -0.36
LINC00642-203ENST00000444942 AK7Q96M32 723 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms