RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 INSRP06213 1382 aa15.1■□□□□ 0.01
SF3A1-203ENST00000444440 FLT4P35916 1363 aa15.1■□□□□ 0.01
SF3A1-203ENST00000444440 PLSCR1O15162 318 aa15.09■□□□□ 0.01
SF3A1-203ENST00000444440 ANO8Q9HCE9 1232 aaPredicted RBP15.09■□□□□ 0.01
SF3A1-203ENST00000444440 NCAPD2Q15021 1401 aa15.08■□□□□ 0
SF3A1-203ENST00000444440 QSER1Q2KHR3 1735 aa15.07■□□□□ 0
SF3A1-203ENST00000444440 KIF24Q5T7B8 1368 aa15.07■□□□□ 0
SF3A1-203ENST00000444440 VIRMAQ69YN4 1812 aaKnown RBP15.06■□□□□ 0
SF3A1-203ENST00000444440 TAF1LQ8IZX4 1826 aa15.06■□□□□ 0
SF3A1-203ENST00000444440 DDX54Q8TDD1 881 aaKnown RBP15.06■□□□□ 0
SF3A1-203ENST00000444440 PANK3Q9H999 370 aa15.06■□□□□ 0
SF3A1-203ENST00000444440 CGNL1Q0VF96 1302 aa15.06■□□□□ 0
SF3A1-203ENST00000444440 SMG6Q86US8 1419 aaKnown RBP15.06■□□□□ 0
SF3A1-203ENST00000444440 NSD2O96028 1365 aa15.05■□□□□ -0
SF3A1-203ENST00000444440 TXNRD1Q16881 649 aa15.04■□□□□ -0
SF3A1-203ENST00000444440 PDGFDQ9GZP0 370 aaPredicted RBP15.04■□□□□ -0
SF3A1-203ENST00000444440 KIF7Q2M1P5 1343 aa15.03■□□□□ -0
SF3A1-203ENST00000444440 POLKQ9UBT6 870 aa15.03■□□□□ -0
SF3A1-203ENST00000444440 PPM1GO15355 546 aaPredicted RBP15.02■□□□□ -0
SF3A1-203ENST00000444440 TNNT2P45379 298 aaPredicted RBP15.02■□□□□ -0
SF3A1-203ENST00000444440 ZCRB1Q8TBF4 217 aaKnown RBP15.02■□□□□ -0
SF3A1-203ENST00000444440 C5P01031 1676 aa15.02□□□□□ -0.01
SF3A1-203ENST00000444440 WASHC2AQ641Q2 1341 aa15.01□□□□□ -0.01
SF3A1-203ENST00000444440 NBPF14Q5TI25 921 aa15.01□□□□□ -0.01
SF3A1-203ENST00000444440 COL24A1Q17RW2 1714 aa15□□□□□ -0.01
SF3A1-203ENST00000444440 LRRC4BQ9NT99 713 aa15□□□□□ -0.01
SF3A1-203ENST00000444440 EYA1Q99502 592 aa14.99□□□□□ -0.01
SF3A1-203ENST00000444440 PRIM1P49642 420 aaKnown RBP14.98□□□□□ -0.01
SF3A1-203ENST00000444440 RAPGEF4Q8WZA2 1011 aa14.98□□□□□ -0.01
SF3A1-203ENST00000444440 CYP27B1O15528 508 aa14.97□□□□□ -0.01
SF3A1-203ENST00000444440 TATP17735 454 aaPredicted RBP14.97□□□□□ -0.01
SF3A1-203ENST00000444440 KCNQ4P56696 695 aa14.97□□□□□ -0.01
SF3A1-203ENST00000444440 EIF4A2Q14240 407 aaKnown RBP14.97□□□□□ -0.01
SF3A1-203ENST00000444440 ZNF827Q17R98 1081 aa14.96□□□□□ -0.01
SF3A1-203ENST00000444440 SYTL4Q96C24 671 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-203ENST00000444440 SLC15A2Q16348 729 aa14.95□□□□□ -0.02
SF3A1-203ENST00000444440 AMER1Q5JTC6 1135 aaPredicted RBP14.95□□□□□ -0.02
SF3A1-203ENST00000444440 UBR3Q6ZT12 1888 aa14.95□□□□□ -0.02
SF3A1-203ENST00000444440 PCDH11XQ9BZA7 1347 aa14.94□□□□□ -0.02
SF3A1-203ENST00000444440 PCDH11YQ9BZA8 1340 aa14.94□□□□□ -0.02
SF3A1-203ENST00000444440 UTRNP46939 3433 aa14.94□□□□□ -0.02
SF3A1-203ENST00000444440 SCN11AQ9UI33 1791 aa14.93□□□□□ -0.02
SF3A1-203ENST00000444440 STK32BQ9NY57 414 aa14.93□□□□□ -0.02
SF3A1-203ENST00000444440 IGSF1Q8N6C5 1336 aa14.92□□□□□ -0.02
SF3A1-203ENST00000444440 PER1O15534 1290 aaPredicted RBP14.92□□□□□ -0.02
SF3A1-203ENST00000444440 ZBTB7AO95365 584 aa14.92□□□□□ -0.02
SF3A1-203ENST00000444440 C4BP0C0L5 1744 aa14.92□□□□□ -0.02
SF3A1-203ENST00000444440 MORC1Q86VD1 984 aa14.91□□□□□ -0.02
SF3A1-203ENST00000444440 AKT1S1Q96B36 256 aa14.91□□□□□ -0.02
SF3A1-203ENST00000444440 SPON1Q9HCB6 807 aa14.91□□□□□ -0.02
SF3A1-203ENST00000444440 KNSTRNQ9Y448 316 aa14.91□□□□□ -0.02
SF3A1-203ENST00000444440 COL5A3P25940 1745 aaPredicted RBP14.9□□□□□ -0.02
SF3A1-203ENST00000444440 PTGER2P43116 358 aa14.9□□□□□ -0.02
SF3A1-203ENST00000444440 ATF5Q9Y2D1 282 aaPredicted RBP14.9□□□□□ -0.02
SF3A1-203ENST00000444440 GOLGB1Q14789 3259 aaKnown RBP14.89□□□□□ -0.03
SF3A1-203ENST00000444440 NKX1-1Q15270 411 aaPredicted RBP14.89□□□□□ -0.03
SF3A1-203ENST00000444440 AEBP1Q8IUX7 1158 aa14.89□□□□□ -0.03
SF3A1-203ENST00000444440 SLC27A3Q5K4L6 730 aa14.88□□□□□ -0.03
SF3A1-203ENST00000444440 SGIP1Q9BQI5 828 aa14.88□□□□□ -0.03
SF3A1-203ENST00000444440 PNPLA7Q6ZV29 1317 aa14.88□□□□□ -0.03
SF3A1-203ENST00000444440 PHKG2P15735 406 aa14.87□□□□□ -0.03
SF3A1-203ENST00000444440 CC2D1BQ5T0F9 858 aaKnown RBP14.87□□□□□ -0.03
SF3A1-203ENST00000444440 MPRIPQ6WCQ1 1025 aa14.87□□□□□ -0.03
SF3A1-203ENST00000444440 SPG7Q9UQ90 795 aa14.87□□□□□ -0.03
SF3A1-203ENST00000444440 COL3A1P02461 1466 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-203ENST00000444440 ZNF831Q5JPB2 1677 aa14.87□□□□□ -0.03
SF3A1-203ENST00000444440 PALLDQ8WX93 1383 aa14.86□□□□□ -0.03
SF3A1-203ENST00000444440 KDM6AO15550 1401 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-203ENST00000444440 MYH14Q7Z406 1995 aaKnown RBP14.86□□□□□ -0.03
SF3A1-203ENST00000444440 IL13P35225 146 aa14.86□□□□□ -0.03
SF3A1-203ENST00000444440 PIGBQ92521 554 aa14.86□□□□□ -0.03
SF3A1-203ENST00000444440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.86□□□□□ -0.03
SF3A1-203ENST00000444440 CCNL1Q9UK58 526 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-203ENST00000444440 KDRP35968 1356 aa14.85□□□□□ -0.03
SF3A1-203ENST00000444440 ADAMTS7Q9UKP4 1686 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 TJP1Q07157 1748 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 MTHFSP49914 203 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 CNGB1Q14028 1251 aaPredicted RBP14.84□□□□□ -0.03
SF3A1-203ENST00000444440 IFNL2Q8IZJ0 200 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 MTFR1LQ9H019 292 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 PPP1R1BQ9UD71 204 aaPredicted RBP14.84□□□□□ -0.03
SF3A1-203ENST00000444440 PLEKHG2Q9H7P9 1386 aa14.84□□□□□ -0.03
SF3A1-203ENST00000444440 AMIGO3Q86WK7 504 aa14.83□□□□□ -0.04
SF3A1-203ENST00000444440 NPC1L1Q9UHC9 1359 aa14.83□□□□□ -0.04
SF3A1-203ENST00000444440 C4AP0C0L4 1744 aa14.83□□□□□ -0.04
SF3A1-203ENST00000444440 SULT6B1Q6IMI4 303 aa14.82□□□□□ -0.04
SF3A1-203ENST00000444440 ASAP1Q9ULH1 1129 aa14.82□□□□□ -0.04
SF3A1-203ENST00000444440 SIPA1L3O60292 1781 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-203ENST00000444440 CHD4Q14839 1912 aa14.82□□□□□ -0.04
SF3A1-203ENST00000444440 SMIM5Q71RC9 77 aa14.81□□□□□ -0.04
SF3A1-203ENST00000444440 TFCP2L1Q9NZI6 479 aa14.81□□□□□ -0.04
SF3A1-203ENST00000444440 CICQ96RK0 1608 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-203ENST00000444440 ZNF530Q6P9A1 599 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-203ENST00000444440 COL23A1Q86Y22 540 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-203ENST00000444440 UBR2Q8IWV8 1755 aa14.79□□□□□ -0.04
SF3A1-203ENST00000444440 FHDC1Q9C0D6 1143 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-203ENST00000444440 ATG3Q9NT62 314 aa14.79□□□□□ -0.04
SF3A1-203ENST00000444440 TMOD3Q9NYL9 352 aa14.79□□□□□ -0.04
SF3A1-203ENST00000444440 HMOX1P09601 288 aa14.78□□□□□ -0.04
SF3A1-203ENST00000444440 ITPK1Q13572 414 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms