RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 FAM135AQ9P2D6 1515 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 CCDC85CA6NKD9 419 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 CALRP27797 417 aaKnown RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 SSR1P43307 286 aaKnown RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 NASPP49321 788 aaPredicted RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 RBM25P49756 843 aaKnown RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 FAM161AQ3B820 660 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 ARHGAP27Q6ZUM4 889 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 PDCL2Q8N4E4 241 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 MPNDQ8N594 471 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 EXOC6Q8TAG9 804 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 STK32BQ9NY57 414 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 NUP155O75694 1391 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 KIAA0556O60303 1618 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 MADDQ8WXG6 1647 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 G3V3G9 751 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 TDO2P48775 406 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 MYCBPQ99417 103 aaPredicted RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 FHDC1Q9C0D6 1143 aaPredicted RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 TOMM22Q9NS69 142 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 DHX57Q6P158 1386 aaKnown RBP3.41□□□□□ -1.86
LIG4-203ENST00000442234 JCADQ9P266 1359 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 STRCP1A6NGW2 1772 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 DDX11L8A8MPP1 907 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 GOLGA6L22H0YM25 854 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 POLD1P28340 1107 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 GRIPAP1Q4V328 841 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 HSP90AB3PQ58FF7 597 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 EP400NLQ6ZTU2 488 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 TNS4Q8IZW8 715 aa3.41□□□□□ -1.86
LIG4-203ENST00000442234 NPHP4O75161 1426 aaPredicted RBP3.4□□□□□ -1.86
LIG4-203ENST00000442234 FBLN1P23142 703 aa3.4□□□□□ -1.86
LIG4-203ENST00000442234 DOK7Q18PE1 504 aa3.4□□□□□ -1.86
LIG4-203ENST00000442234 GOLGA6L1Q8N7Z2 621 aa3.4□□□□□ -1.86
LIG4-203ENST00000442234 PTCD2Q8WV60 388 aaKnown RBP3.4□□□□□ -1.86
LIG4-203ENST00000442234 TMX1Q9H3N1 280 aa3.4□□□□□ -1.86
LIG4-203ENST00000442234 TSKSQ9UJT2 592 aa3.4□□□□□ -1.86
LIG4-203ENST00000442234 PPP1R37O75864 691 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 ARID4AP29374 1257 aaPredicted RBP3.4□□□□□ -1.87
LIG4-203ENST00000442234 MCM4P33991 863 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 HMGN5P82970 282 aaKnown RBP3.4□□□□□ -1.87
LIG4-203ENST00000442234 KIAA2012Q0VF49 1180 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 MPRIPQ6WCQ1 1025 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 ZNF784Q8NCA9 323 aaPredicted RBP3.4□□□□□ -1.87
LIG4-203ENST00000442234 GEMIN8Q9NWZ8 242 aaKnown RBP3.4□□□□□ -1.87
LIG4-203ENST00000442234 USHBP1Q8N6Y0 703 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 PRAM1Q96QH2 718 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 ATP10AO60312 1499 aa3.4□□□□□ -1.87
LIG4-203ENST00000442234 HOXB3P14651 431 aaPredicted RBP3.39□□□□□ -1.87
LIG4-203ENST00000442234 EAPPQ56P03 285 aaPredicted RBP3.39□□□□□ -1.87
LIG4-203ENST00000442234 MKRN1Q9UHC7 482 aaKnown RBP3.39□□□□□ -1.87
LIG4-203ENST00000442234 TRIOBPQ9H2D6 2365 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 PTGER2P43116 358 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 MMP14P50281 582 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 DPY19L2Q6NUT2 758 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 C3orf67Q6ZVT6 689 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 YY1AP1Q9H869 796 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 MAP3K1Q13233 1512 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 FSD2A1L4K1 749 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 DDB1Q16531 1140 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 CFAP70Q5T0N1 1121 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 PTF1AQ7RTS3 328 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 GBP4Q96PP9 640 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 DEF6Q9H4E7 631 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 RSPH14Q9UHP6 348 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 MYO9BQ13459 2157 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 IQGAP2Q13576 1575 aa3.39□□□□□ -1.87
LIG4-203ENST00000442234 ATAD2Q6PL18 1390 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 SLC20A2Q08357 652 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 EFCC1Q9HA90 598 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 SMC4Q9NTJ3 1288 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 RRBP1Q9P2E9 1410 aaKnown RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 CAMSAP1Q5T5Y3 1602 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 MPHOSPH10O00566 681 aaKnown RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 KCNQ2O43526 872 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 HOXB1P14653 301 aaPredicted RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 ANAPC15P60006 121 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 CTR9Q6PD62 1173 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 LARP1Q6PKG0 1096 aaKnown RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 SKAP1Q86WV1 359 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 CEP83Q9Y592 693 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 CUL7Q14999 1698 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 TPRP12270 2363 aaKnown RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 TBC1D12O60347 775 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 RRP1P56182 461 aaKnown RBP3.38□□□□□ -1.87
LIG4-203ENST00000442234 EGFL6Q8IUX8 553 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 UNC5CLQ8IV45 518 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 CHMP5Q9NZZ3 219 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 ZFYVE16Q7Z3T8 1539 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 PTPRKQ15262 1439 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 C9orf84Q5VXU9 1444 aa3.38□□□□□ -1.87
LIG4-203ENST00000442234 ZNF500O60304 480 aaPredicted RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 PTCD1O75127 700 aaKnown RBP3.37□□□□□ -1.87
LIG4-203ENST00000442234 SATB1Q01826 763 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 TMEM92Q6UXU6 159 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 CEP120Q8N960 986 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 OXER1Q8TDS5 423 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 TSC1Q92574 1164 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 CARD10Q9BWT7 1032 aa3.37□□□□□ -1.87
LIG4-203ENST00000442234 CFAP43Q8NDM7 1665 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms